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LotjaGi5g1v0325900.2

Overview

Field Value
Gene ID LotjaGi5g1v0325900
Transcript ID LotjaGi5g1v0325900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Alpha-L-fucosidase 2; TAIR: AT4G34260.1 1,2-alpha-L-fucosidase; Swiss-Prot: sp|Q8L7W8|FUCO2_ARATH Alpha-L-fucosidase 2; TrEMBL-Plants: tr|A0A151U7Q5|A0A151U7Q5_CAJCA Alpha-L-fucosidase 2; Found in the gene: LotjaGi5g1v0325900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:64347185..64352999) extracted from Lotus japonicus Gifu genome v1.2.

ACACTACCAGCTAACAGAGACAGCTTTCAGCTTCTACTACTCCACCGACTCCTTCACTCTCTCTTCCTCCTTCATCTCAT TCCCCTTTCTGCAATGGAAGATGCGGAATGGGTTCTGGTGCAGCGCCCCCCACAGAAAGACTGGTGGAACCCGACTTCAG CCAATGCAGTGGGTGATGGACCTTCTAGACCCTTGAAGGTTACTTTTTCTGGGCCTGCAAAGCACTGGACCGATGCCATC CCCATTGGCAATGGCCATCTTGGAGCCATGGTTTGGGGTGGCGTGCAATCGGAAATTCTCCAGCTCAATGGTAATCAAAC CCCTCAAAAAACTTCCAATCTGTTACATATTTAGTTTAGTTCATGTTGCTTTGATCCAAAATGGCAATTGATTTGAGGCT TAGAAGCTTAATACACTCTGTCTTTGAGCTATATATAGTTCCTGCTATTTGTTACCCGAGATTCTGATTAATATTTTGAG CATCAGAAATGTTAGACTGTGCTATTGCTTGATTTGTTGTTATACCTGATTTGGGACAATTACCCTAAGTGACACACAGC ATGTAGCTACTTTGATGGGAAGGCTGCATTGTGTCCTGAATTTACCATCAATTATTTGTTGGATCCAATGGGGATCAGGG AGAAAAATATGGTCTGAGAGTTCAATGTTTTCATATGGTGGGCAATAATACTATAGGCATTTCTAGTTGTAAAGGCATTT AGGATAATAGGCATGAAGTCATGCTGCATTGTGCGTAGCGAAGCCAAATTAGCTGTGTCTTTCTCGTTCGTTATGCATGC TAATGTGAACATTCAAAATTATTTTGTAGAGGACACACTTTGGACTGGGATTCCTGGCGATTACACAAAAAAAACTGCTC CTGAAGCGCTGGCTGAAGTTCGAAAACTTGTTGATGATAGAAAATACTCTGAAGCTACGGCAGCAGCTGTCAAGTTGTCA GGAGATCCTTCTGATGTATGTCATATCCTTCCTTTATTTATGAGAAGCAATGCAAATTTTTATTTATTAGACAACCCACC AACATGTATATAAACATAGGAATTGGAGTAGGAGGATTTTTCTTTAATAATATATGTCACATGTTTTTATTAAACTAGTA TCATCATTCATCGTTTCTCCCCCCCCCCCCCCCCCCCCCCCCTCCTTTTCCAGAAAAATCCTCACCCATTTTGATGTTGT TGGTGCATGAGTTAAGGAAGCTTTATGCAATGTTGGCAGTCATGGCTAACTCTTATTTCTTGATATGAAGGTATACCAAC TTATTGGGGACATCAAGTTGGAATTTGATGATTCTCATCTTAAATATTCAGAAGAGTCTTATCGTAGAGAGCTCGATTTG GATAATGCAACAGTGAAAGTAAAATATTCTGTTGGTGATGTAGAATTTTCCAGAGAACATTTTGCTTCTAATCCAGATCA AGTGATAGTGGCAAGGTTTTCTGCAAGCAAGTCAGCGTCATTATCATTTACAGTGTCTTTGGATAGCAAATTACATGACA ATTTACGGGTAAATGGCCAAAATCAGATAATAATGGAAGGAAGTTGTCCTGGTTCTAGGATCAGGCCAAAAGTGAATTCT AATGACCCTCCAAAAGGAATTCAATTTTCTGCAGTTCTTGATATACAAATTAGTAATGACAAAGGGGTTATACATGTCTT GGATGATAAGAAGCTAAGAGTTGAAGGTTCAGATTGGGCTATTTTACTTCTGACAGCTTCTTCTTCTTTTGATGGCCCAT TTACTAAGCCTGAAGACTCTAAGAAAGATCCCACATCTGAGTCCCTTAGTAAGATGAAGTCTGTGAAAAGTGTTTCATAT GCCGATCTTTATGCACGTCACTTGGATGACTATCAGAATCTATTTCATCGTGTCTCATTGCAACTCTCTAAAAGCTCAAA GAATGTTTTAGGAAAATCTGTTTTGGACGAAAGGAAATTGGTTTCCCCTCAAACTAACATCTCTCAAATGGGAGGTGATG AAACCATTCCAACTTCAGCAAGAGTCAAATCATTTCAAACTGACGAAGATCCTTCCTTTGTGGAGCTTTTGTTTCAATAT GGTCGATATCTACTAATTTCTTGTTCACGTCCTGGAACTCAGCCGGCAAACTTACAGGGTATATGGAACAAAGATCTCGA GCCTGCATGGGAGTATGTTTTCCTTTTCCCTTTTTCCTTCTTCCCTCTCATAGCAATAAATTGATAAATGAATGAAAAAA AGGTGCAACTGTATGCTATATAGTATCAAGATTATATAGTGGCTTAGAGTTTTAGATGGATATGGATTATCAAATATATC TAGAAGCAACTTCATGAATGATTTATTAAAGTTTGTAATTTGTATCATTTCTTTTGTCATCCAGTGGTGCTCCTCACACT AATATTAATCTTCAAATGAATTATTGGCCGTCTCTGTCTTGCAACCTACACGAATGCCAAGAGCCGTTATTTGATTTCAT TTACTCTTTGTCAGTCAATGGTAGTAAAACTGCAAAGGTATTGTCTTTTTCACTCTCCCTTTCTTATTATTCTTGGCATT CTATTAAAGAAAGGGATCCTTTATGCTTGTTAGCTAACAGTGACTTTGTACACTTGTCCCTCCCCTTTGCCCACAAATCT ATAGCAACGCAAAAAAAATGAAAGGAAAAAAAAATAGTTTCAACTTTCAAGTATTGCCATTTTCACAGCATCTGGTCACA ATGTCATCAATTTTATATATTCTATCCAGAATTTCATTTGATCCAGCACACAGGTGAACTATGAAGCAAATGGTTGGGTT GTGCATCAAGTTTCTGACATATGGGCCAAAACATCCCCAGATCGAGGTGAGGCTGTTTGGGCTTTATGGCCAATGGGTGG AGCTTGGCTTTGTTGCCATCTATGGGAGCATTATACTTATACAATGGACAAAGTAAGTTCTGGTTTTTCAATAAATTATC TAAACCTTTATTTAAAATATTGACTTAAAATTGGTCTTGTGTAAATGGCTGTGTTGGGGATTTAACAATTTCAAAATTCC CCAAGTTATTTAATTTGCAGATCAATAACCATCATTTTTTATCTGACTGATCTGCTTCTATTTTCATGGCATTACAATGA GTTGAACTCAATTTGTTGAAACATGCTATTCAAACACATTTTTGTGACTGGGCACTTTGACCTGTTTTGGCTTATTATGT TTTACATTAACAATGAGATTTCAAACTGATACTTATCCAAATAATTCTTTGTTTTTCCTTCTAGGGAACAAGAAGCTGTA TACATATTATGAACTTCCATTGAAATTACAAAACATTTTCAGATTCATGTTTTATTTTATGGGTGTATAGATGCAACTAT TTACTGCTGTATTACCATTACTTTTATAGGCTACAACTCATAAATATAACCCAGTTATATGATACAAACTACTGCAGGAT GGATAACCTAATATATTATGATGGCATGACCGCATGGGCATCTATGTATTTTGTATTTGCAATCATAATTGATGCTTAAT TTTCTTTAATATTAGGGTTTTCTCAAAAATAAAGCATATCCTTTGTTGGAAGGATGTACATCATTTTTGCTGGATTGGTT GATTCAAGGCCATGATGGATTGTTGGAAACTAACCCATCAACTTCACCAGAGCACATGTTCACTGCACCAGATCAAAAGC CTGCTAGCGTAAGCTACTCATCAACCATGGACATTTCAATCATAAAAGAAGTATTCTCCATAATCATATCTGCTGCTGAG GTAAAACTGATCTTAGTGCTCAAAATTAGTTTCCTATTATCCTAATTTTACCTTGGCCACTAAGTTTCTCAAAAATAGGT TCTGGGAAGACAAGATGATGCTATTATCAAAAGAGTTACCGAGTCTCTGCCTAAGCTCCCTCCAACAAAAATCTCTAGGG ATGGATCCATTATGGAATGGGTATGAAATTATATTTGATATTTGCATTCCTTCCTCCATCTCTCAAGTGTCAATTTGGCC AGTTTTTGTCACCTGATGTCTTGCTTTGATTCGCAACGACAGAGTTAGCAATTCCATGTTAACTTTAACACCTTATTTAT TTGGCAGGCAGAAGATTTTCAGGACCCAGATATACATCATAGACATGTTTCCCATCTGTTTGGCCTGTTTCCAGGACACA CAATCAGTCTTGAGAAAACTCCAGACCTTTGTAAAGCTGTGGATTATAGTCTAATTAAAAGAGGTATTTTATGAGAACTT TAGATGATGAATTCTTTTCAGTGATAGTAGTTTTTTTCCTCTTTGAATATGCTTGGCTATTACTTTTTCTGTTGAAAATC CGTATCTTAGATGAACTAAAACAGCCGCATGTAATTATTAATATCTGATTAGAATATAGTTATATAAGATGTAGTATAAT AAACGATGTGTTAGTTGCTTTTGAATAATTAAAGGGATTTTATGAGTTTAGACTTGAGTACACCTTCACAATTCACTGTC TGCTGTCTTAAAGCTTCTAGGGGGTTTAGAAGACTGTTATATTGGTACTCCTGCAATTATATATCTCATTACAGACTACA ATATTTATGCTCAACCTTGTATATATGACGAAAAGTTGTATGTTTTTAATATAGAATGCTAGAAATAATATAATTCAACA TTAATTGCCATTGTTGCATGGTATTACAGGGGATGAAGGTCCAGGGTGGTCAACAACTTGGAAAGCTTCATTATGGGCTC ACCTTCACAACAGTGAGCATGCATATCGCATGATAAAGCACTTGATCGTTTTGGTAGACCCTGAACATGAAAGTGATTAC GAAGGAGGACTTTACAGTAACCTGTTCACAACACATCCCCCTTTCCAGATTGATGCAAACTTTGGGTAAGCCCCATCTTT ATGAATGAACTGTTGAACGTTTGTGCATCTTGTCAATTTCACTTTCATCATATGAGCTGAAGTATTTTTAAGGCTTCAAA TTTTGTTCATGAATGTCAATGTTTTCTGATAGACCTTGTGTGCTCATTGAGTCAGTGTGTTTTCCCCTGATCTGAACATT TTGCAATTATCATATCTGATTGAATTTGTTATTGCATCTTGTCCGCATTCTGACTTCAAAACTTGAGTTGGGTCTAATCT ACCCTAAAAGCTAGATCATGTGTGGGGATTTCTCTACCCTTTATAAGGACTATTTTGGTCATATCTTTAGTCAATGTGAG ACCTGAACTTATACATCATAGTTCTTTAGTTCTTAATTTAGTTCAAACCGGTGGAGAAATTCATATGATTCTAAATTTAT GATTGGAACCATGACATCATAGTTATTTTTTATTTTGAACTTCACCCACCTGTTTGGGAGATGTAACCTTCAAAGTTGTA TGTAGAAACCTTGGCCTATGACTAAAAGTTCTGTCTATTAAAATTTGTAAATGTTGAAAATACACACACTGAAAATTGGT AATGTTACCCGATATCTGAATCAGTTTAGCTGAGGGAAAACAATGTTTGTTGTCAGGTTTTCAACAGCAATTGCAGAAAT GCTTGTTCAAAGCACACTGAAGGACCTCTACTTGCTTCCCGCACTACCTCGCGGAAAATGGGCAAATGGTTGTGTAAAAG GATTAAAAGCACGTGGTGGCGTGACAGTCAACATCTGCTGGAAAGAAGGAGATCTGCGTGAAGTGGGGCTTTGGTCAGAA AACCAGAATTCCCGAGTGAGACTACATTATAGAGGAACCATGGTCTTAGCAAATTTATCACCTGGCAGAGTTTACTCATA TAATAACCAGTTGAAGTGTGTGAAGACATACTCACTTAGCCAACTGAGTCTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0325900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCATCCCCATTGGCAATGGCCATCTTGGAGCCATGGTTTGGGGTGGCGTGCAATCGGAAATTCTCCAGCTCAATGGA CACACTTTGGACTGGGATTCCTGGCGATTACACAAAAAAAACTGCTCCTGAAGCGCTGGCTGAAGTTCGAAAACTTGTTG ATGATAGAAAATACTCTGAAGCTACGGCAGCAGCTGTCAAGTTGTCAGGAGATCCTTCTGATGTATACCAACTTATTGGG GACATCAAGTTGGAATTTGATGATTCTCATCTTAAATATTCAGAAGAGTCTTATCGTAGAGAGCTCGATTTGGATAATGC AACAGTGAAAGTAAAATATTCTGTTGGTGATGTAGAATTTTCCAGAGAACATTTTGCTTCTAATCCAGATCAAGTGATAG TGGCAAGGTTTTCTGCAAGCAAGTCAGCGTCATTATCATTTACAGTGTCTTTGGATAGCAAATTACATGACAATTTACGG GTAAATGGCCAAAATCAGATAATAATGGAAGGAAGTTGTCCTGGTTCTAGGATCAGGCCAAAAGTGAATTCTAATGACCC TCCAAAAGGAATTCAATTTTCTGCAGTTCTTGATATACAAATTAGTAATGACAAAGGGGTTATACATGTCTTGGATGATA AGAAGCTAAGAGTTGAAGGTTCAGATTGGGCTATTTTACTTCTGACAGCTTCTTCTTCTTTTGATGGCCCATTTACTAAG CCTGAAGACTCTAAGAAAGATCCCACATCTGAGTCCCTTAGTAAGATGAAGTCTGTGAAAAGTGTTTCATATGCCGATCT TTATGCACGTCACTTGGATGACTATCAGAATCTATTTCATCGTGTCTCATTGCAACTCTCTAAAAGCTCAAAGAATGTTT TAGGAAAATCTGTTTTGGACGAAAGGAAATTGGTTTCCCCTCAAACTAACATCTCTCAAATGGGAGGTGATGAAACCATT CCAACTTCAGCAAGAGTCAAATCATTTCAAACTGACGAAGATCCTTCCTTTGTGGAGCTTTTGTTTCAATATGGTCGATA TCTACTAATTTCTTGTTCACGTCCTGGAACTCAGCCGGCAAACTTACAGGGTATATGGAACAAAGATCTCGAGCCTGCAT GGGATGGTGCTCCTCACACTAATATTAATCTTCAAATGAATTATTGGCCGTCTCTGTCTTGCAACCTACACGAATGCCAA GAGCCGTTATTTGATTTCATTTACTCTTTGTCAGTCAATGGTAGTAAAACTGCAAAGGTGAACTATGAAGCAAATGGTTG GGTTGTGCATCAAGTTTCTGACATATGGGCCAAAACATCCCCAGATCGAGGTGAGGCTGTTTGGGCTTTATGGCCAATGG GTGGAGCTTGGCTTTGTTGCCATCTATGGGAGCATTATACTTATACAATGGACAAAGGTTTTCTCAAAAATAAAGCATAT CCTTTGTTGGAAGGATGTACATCATTTTTGCTGGATTGGTTGATTCAAGGCCATGATGGATTGTTGGAAACTAACCCATC AACTTCACCAGAGCACATGTTCACTGCACCAGATCAAAAGCCTGCTAGCGTAAGCTACTCATCAACCATGGACATTTCAA TCATAAAAGAAGTATTCTCCATAATCATATCTGCTGCTGAGGTTCTGGGAAGACAAGATGATGCTATTATCAAAAGAGTT ACCGAGTCTCTGCCTAAGCTCCCTCCAACAAAAATCTCTAGGGATGGATCCATTATGGAATGGGCAGAAGATTTTCAGGA CCCAGATATACATCATAGACATGTTTCCCATCTGTTTGGCCTGTTTCCAGGACACACAATCAGTCTTGAGAAAACTCCAG ACCTTTGTAAAGCTGTGGATTATAGTCTAATTAAAAGAGGGGATGAAGGTCCAGGGTGGTCAACAACTTGGAAAGCTTCA TTATGGGCTCACCTTCACAACAGTGAGCATGCATATCGCATGATAAAGCACTTGATCGTTTTGGTAGACCCTGAACATGA AAGTGATTACGAAGGAGGACTTTACAGTAACCTGTTCACAACACATCCCCCTTTCCAGATTGATGCAAACTTTGGGTTTT CAACAGCAATTGCAGAAATGCTTGTTCAAAGCACACTGAAGGACCTCTACTTGCTTCCCGCACTACCTCGCGGAAAATGG GCAAATGGTTGTGTAAAAGGATTAAAAGCACGTGGTGGCGTGACAGTCAACATCTGCTGGAAAGAAGGAGATCTGCGTGA AGTGGGGCTTTGGTCAGAAAACCAGAATTCCCGAGTGAGACTACATTATAGAGGAACCATGGTCTTAGCAAATTTATCAC CTGGCAGAGTTTACTCATATAATAACCAGTTGAAGTGTGTGAAGACATACTCACTTAGCCAACTGAGTCTTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0325900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPSPLAMAILEPWFGVACNRKFSSSMDTLWTGIPGDYTKKTAPEALAEVRKLVDDRKYSEATAAAVKLSGDPSDVYQLIG DIKLEFDDSHLKYSEESYRRELDLDNATVKVKYSVGDVEFSREHFASNPDQVIVARFSASKSASLSFTVSLDSKLHDNLR VNGQNQIIMEGSCPGSRIRPKVNSNDPPKGIQFSAVLDIQISNDKGVIHVLDDKKLRVEGSDWAILLLTASSSFDGPFTK PEDSKKDPTSESLSKMKSVKSVSYADLYARHLDDYQNLFHRVSLQLSKSSKNVLGKSVLDERKLVSPQTNISQMGGDETI PTSARVKSFQTDEDPSFVELLFQYGRYLLISCSRPGTQPANLQGIWNKDLEPAWDGAPHTNINLQMNYWPSLSCNLHECQ EPLFDFIYSLSVNGSKTAKVNYEANGWVVHQVSDIWAKTSPDRGEAVWALWPMGGAWLCCHLWEHYTYTMDKGFLKNKAY PLLEGCTSFLLDWLIQGHDGLLETNPSTSPEHMFTAPDQKPASVSYSSTMDISIIKEVFSIIISAAEVLGRQDDAIIKRV TESLPKLPPTKISRDGSIMEWAEDFQDPDIHHRHVSHLFGLFPGHTISLEKTPDLCKAVDYSLIKRGDEGPGWSTTWKAS LWAHLHNSEHAYRMIKHLIVLVDPEHESDYEGGLYSNLFTTHPPFQIDANFGFSTAIAEMLVQSTLKDLYLLPALPRGKW ANGCVKGLKARGGVTVNICWKEGDLREVGLWSENQNSRVRLHYRGTMVLANLSPGRVYSYNNQLKCVKTYSLSQLSL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF007663
15 795 781 6.6E-284
IPR016518
PANTHER
PTHR31084
24 793 770 0.0 –
PANTHER
PTHR31084:SF13
24 793 770 0.0 –
Pfam
PF14498
26 236 211 8.7E-42
IPR027414
Gene3D
G3DSA:2.70.98.50
27 281 255 2.0E-193 –
Gene3D
G3DSA:1.50.10.10
35 751 717 2.0E-193
IPR012341
SUPERFAMILY
SSF48208
246 754 509 2.89E-83
IPR008928
Gene3D
G3DSA:2.60.40.1180
282 761 480 2.0E-193
IPR013780

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004560
Molecular function Alpha-L-fucosidase activity Catalysis of the reaction: an alpha-L-fucoside + H2O = an alcohol + L-fucose.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0325900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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