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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0327200 |
| Transcript ID | LotjaGi5g1v0327200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PRKR-interacting protein 1; TAIR: AT2G15270.1 PRKR-interacting protein; Swiss-Prot: sp|Q9H875|PKRI1_HUMAN PRKR-interacting protein 1; TrEMBL-Plants: tr|I3RZZ5|I3RZZ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0327200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64477248..64479747) extracted from Lotus japonicus Gifu genome v1.2.
ATTCCATTTGCCCCAAGTCCCCACTCCACACAACAATCAAAAGATACCTGAAACTCTGAAAGGGCCCTAATTCAAGAGCA GCTGTTCGGGTATCTTCAATAGGAGGAGAGAAGTCATTGCTGCAGTCCCGTGCAATTGAGGAGCACTTGATTGGAATTAA GGCGGAGAGAGTGGAAGTGAGGGGATTTGGGTCTGAAGTAAAAAATTAGGGTTTCTGTAAATCCCAAAATGTCGACGGGA AAACCCAAAGACGCTGATTTTCAGATGGTTGCAGTGCCGGGAATGTCGAAGCCACCACTTCCTCCGGCAACTTCATCGAG TGCTATAGTTGAATATACTCCCGTTTTTAAGGAGGAAGAGGAAGACCTGGAAATCAAGCTCCGACGAATTATCGATAACG TCCCCGTCCGTGTCAGCAATACTTCCGGTAGTTCTGCAGGTTCTGGCTCCGGTGACTTCCACCAGGTAAAACTGCTCTGT TTATCCTTTCTCTTATGCTTGAGCTAGCCCTAGAAAAGTGCATGTTTGATAAATGGAAATTCATATTAATGTTAAGTTAG TTACTATCAAGAAGAAAAACCGGCATTGTTAGGGTAATTGTTGTTTCCCAAGTACCATTATCGGTTCTAGTAGGTTTGGT ACTGAAATTTCATTTTGTAGTTACAAAAGGACCTTAGTGGGAGTCGCGAATTTTAGTCGTGGTTATAGCTGTTGCCTGTT GCCTGTTTATCCTGCCCCATTTTGGATTCATAAAAATTGCATAAGCAATATGAATTATGAAGTGATGCTACAATTGTTTC TGTTGTTTGGCTCTAAGATCACTGTGGTGGTCGATGGAGAGTTTGAGTGGTAGTGGTCATGAGGGCGACGCTTTAGTTGA AAGACACTATGCTTGACGGAGGATCAGAACGAGTTTGTATTTAGTGGGACTATGTAGTGTGGAAGTTCTATAAACTGAAG ATCAATGGGTGGGAGGAGTCTTGTTGGTTTACATTTAGCGGGGTGAGATGGGGAGGGTTCAAATGAAACATATTTGGCAT CATGTCTAAGGAATTTTAAAGAAAATAGTACTTTTAAGTTTTAACTATGAGAGCTGCTATATGAAACTAATAATTTCAGA CAAATGAGTCACAAAAATCATAATTACTAATCAAGGCTTTGTGGACAGGTGAATGGTTACAATACATGTGAGTGTTTGCT GAAAGGAATGACTGCATGTACTTTTCTTTTCTTTCTCGCTACACTGATTTGTGTCATCAACTATACACTGCTCTCCCTAT TTGTGGATTAAACTTAAGAAATAAGAGTTTATAAAACGCAATAAAAAGGTTCATATAAATGTGGAATGTTAACTGATTGG CAAAAACATCATGTTCCAATGCAGGGAAGGCTGCTTGCTTGTTGATGGGTGCTTGATATCACAGCTGTGAATAATAATTT GATTCTGAGGCTAACTCTCTAATGCATAAACTTATCAGAACTTTGAATTATCAAGGGGATTAACCTTGCTCCTTTCATTA ATTTTGAGAAGCCTTGTCATTGAACCTCATTAGTGTAATAGTGTTAAAGAATCCTTTCACACACTTGAGATTTCTCGTCC TGAACCATATGATTAGAATGAAATCTCTTTTCATTTGGGTGATATGTAATAACATCGACATGCATGCTGAAGTGAATTCT GCGCACTCATTATGCTTAACATATAATATATGGGTTTTTCCCTGTTCTGACTTCTGAGTGTTTTTTTTTGTATTCTTCAA AATATATTCCAACAGTATCGGCAGATGAGACGCAAAGAGCAAGATCGTCTTGCTAGGATGGAAGTTGACTACCAGAGAAG GAAAGAACTTGCGGAATTTAGTATGAGAAGGGAGGAAAGATTAAAAGCTGCGGAGGAACGAACAGCAAAAAAGCGAGCAA AACGTCAAAAGAAAAAGCAAAAGAAAAAGGAGAAGAAGTTGAAACTGAATGCTGGAGAACCACAGCAAGAGAAAGAAGAT TCCTCAGATGATGGAGATTCTGATAATGAAGAGGAGGCCGCACCTTGAAACAAGCCCTGGTTGTACCCAAAATTTTAAAT TTTGATTCAAGCTAAGTTTGATGGGCATATCTAGCTTAACACAAAACACAGTCATGATCTCTGGTTTCTGTTATTTGTAT GAGAGTTGTGAGGTACTGTGCTCAAATCAACAGATTATATGAATTTTTTCGTAGAACAAATATCACAACCCTTTCATTTA ACAGAGCCCAGCATTCACCTTTGCACTGATGTGTGGAATGATGAGGTAGTATTAAAAAAAATGCTAATCCTTGGAAACTT TCGTAATGTGCAGTGCTGTTTTTGGTGGAAATCTTCACAGTATCTCCACTACCATTAGACTCAAATTTGACATTGTAGAC GTTTATCTCAATCTGATGAATGATGACCATGCAGCGTTTTACTTCTATAACTATATTTTCTTGTTTTTTTTTGTCCCCTT AATGCTGTGTGACATAGACT
CDS sequence (LotjaGi5g1v0327200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACGGGAAAACCCAAAGACGCTGATTTTCAGATGGTTGCAGTGCCGGGAATGTCGAAGCCACCACTTCCTCCGGC AACTTCATCGAGTGCTATAGTTGAATATACTCCCGTTTTTAAGGAGGAAGAGGAAGACCTGGAAATCAAGCTCCGACGAA TTATCGATAACGTCCCCGTCCGTGTCAGCAATACTTCCGGTAGTTCTGCAGGTTCTGGCTCCGGTGACTTCCACCAGTAT CGGCAGATGAGACGCAAAGAGCAAGATCGTCTTGCTAGGATGGAAGTTGACTACCAGAGAAGGAAAGAACTTGCGGAATT TAGTATGAGAAGGGAGGAAAGATTAAAAGCTGCGGAGGAACGAACAGCAAAAAAGCGAGCAAAACGTCAAAAGAAAAAGC AAAAGAAAAAGGAGAAGAAGTTGAAACTGAATGCTGGAGAACCACAGCAAGAGAAAGAAGATTCCTCAGATGATGGAGAT TCTGATAATGAAGAGGAGGCCGCACCTTGA
Protein sequence (LotjaGi5g1v0327200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTGKPKDADFQMVAVPGMSKPPLPPATSSSAIVEYTPVFKEEEEDLEIKLRRIIDNVPVRVSNTSGSSAGSGSGDFHQY RQMRRKEQDRLARMEVDYQRRKELAEFSMRREERLKAAEERTAKKRAKRQKKKQKKKEKKLKLNAGEPQQEKEDSSDDGD SDNEEEAAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 164 | 138 | 2.1E-56 | – | |
| PANTHER | 27 | 164 | 138 | 2.1E-56 | ||
| Pfam | 55 | 166 | 112 | 2.1E-28 | ||
| MobiDBLite | 60 | 169 | 110 | - | – | |
| MobiDBLite | 60 | 76 | 17 | - | – | |
| MobiDBLite | 79 | 124 | 46 | - | – | |
| Coils | 110 | 144 | 35 | - | – | |
| MobiDBLite | 125 | 139 | 15 | - | – | |
| MobiDBLite | 153 | 169 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Double-stranded RNA binding | Interacting selectively and non-covalently with double-stranded RNA. |
Expression pattern of LotjaGi5g1v0327200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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