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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0329300 |
| Transcript ID | LotjaGi5g1v0329300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT4G34160.1 CYCLIN D3;1; Swiss-Prot: sp|P42753|CCD31_ARATH Cyclin-D3-1; TrEMBL-Plants: tr|I3SZW4|I3SZW4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0329300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64643117..64645763) extracted from Lotus japonicus Gifu genome v1.2.
TTCATATTCATTCATATAAATATATAAAAGACAAGAGTGAAACCCAACCCAACACAACACAACACAACACTACACTACCC ACTCAGCTCAAAATTCAACCCTTCTTCTTCTTCCACTTCTCCCTACTTTTCTTTCTCTGCTTTCCTTTTCTTCTTCTTAC TCCTACTCTCTCTTCTTCACTCCTTCAGATTCAGAGTGCAAGAAAGAAAGAAAGACAGAGAGAGATGGGTGTGAGTGTGA TGAATCTGAGTGTTTTCTTCCTAAAATGAGCAAAAGACCAGTGACCCTCTTCTTCACTGAAGAAGATGGCAATCCATCAA CATCATCACAACAATGTCATTGACCAGCTAGAACAAAATGAAAATGTTTCTTCTGTCTTGGATGCTCTTTACTGTGATGA AGAAAAATGGGAGGAAGAGGAAGTAGAACAAGTGGTTGGAGAGTTATCTGAAGAAGAAACAAGTGATGTGACAACAAACA ATGACCCTAACAACACTTGTTCTCTGTTTCCCCTGCTTTTGTTGGAGCAAGACTTGTTCTGGGAAGATGAAGAACTCAAC TCTCTCTTCTCCAAAGAGAAGATCCAACACCAAAACTATTATAATGATGTGAACTCGGACCCTTTTCTCTCTCAGCCTCG TCATGAGGCAGTGAAATGGATGCTTAAAGTCAATGCTCATTATGGATTCTCTGCTCTCACTGCAACACTTGCTGTTACCT ACTTTGATAACTTCCTTTTGAGCTTCCATTTTCAAAGTGAGAAGCCATGGATGATCCAGCTTGCTGCTGTTACTTGCATC TCTTTGGCAGCTAAAGTTGAAGAAACCCAAGTGCCACTTCTCTTAGACCTTCAAGTAAGTCAAACACAAAGCTCTGTTCA CTCTGTTTTCTTCTCCGAGCTTTTTCTCATCTCATGAACCTGGTTGTATAAATGTTCTTTTTTCAGGTGCAAGATGCTAA GTTTGTGTTTGAGGCAAAGACCATTCTGAAAATGGAGCTTCTGGTTCTGTCCACACTCAAATGGAAGATGCATCCTGTGA CTCCACTTTCATTTCTGGATCACATTATCAGAAGGCTTGGATTGAAAACACACCTTCATTGGGAGTTTCTCAGGCGCTGT GAGCATCTTCTTTTGTCTGTGCTTTTAGGTAAAAACTTTACTTTTTGAGATTTAGCATTATTAACTTTTTCGATCTGTTC AAAGAATCAACAAAGACAAGGTCTTGATTTTGTTACCATTTTGCTATGTGTGTTTTTGTTGAGCCTAGATTCAAGATTTG TTGGTGTTCTTCCTTCTGTGTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTGAGAAGAGTGATGGGGTGGAA TACAAAAAGCAGCTTCTGGGTGTTCTCAAAATTAACAAGGTTAGTAGTAATGCTTGGATGCTCATGTGTTTGTTTAAGGA ATATTTGTTTATTTAATGCACATGAGTAGCACATCATTTGATTTAGTTAAGCATCTTAGATTAAATGCACATGAGTAAAT ATCATTTGATTTAGTTAAGCATCTTAAATTAAGTGTGTACATGAGTAGCACATCATTTGATTTAGGTAAGCATAGATTAT ATGCACATGATTAGCACATTATTTGATCTTAGTTAAGCATCTTAGATTAAACAAATTAAATGCAGATGATTAGCACATGA GTTTATCTTAATTAGTTAGTCCTCTGCATTTTGACAGGGGAAAGTAGATGAATGCTATGATGCCATGCTTGAGCTTACAA ATGCCAATGATTATGATGATAACAAGAAGCTTAATAAGCGCAAGTATGAGGAAATAATCCCTGGTAGCCCAAGTGGCGTC ATTGATGCTGCATTTAACTCTGATGGTTCCAACGATTCGTGGACAGTGGGGTCATCATTGTTTTCATCCTCAGGCCCAGA GTCTCCTCTGTTCAAGAAAAGCAGAACCCAAATGAAATTGTCACCACTTAACAGGGTCATTGTTGGAATTGTTAGCACTT CACCTTGATCTGAAACTCTCTGCATTCCCTTTCTATTTCCTTCTCATGAGAAAGAACCATAAAAATTACCCCAAAAAAGA TCTAATGTTTATTTACTATGGTTATTATCATTAGTCTTTCCCTTCATGTTGCTGAGCTAGTATTGCCTTCCTTTCTATCT CTTCATTTCCAACAATGTCCAGCATTCTTGAAGAGGTAATGAAGGAATGGTTTCTGAGGGAAGAAGAGGAGGAGGACAAA GTTGGCAATGAAGTGAAGACTATCAGCAAGCACTCTATAAGATGTTTAAGGCACTTTTTATTTAATTTTATTCAATGGAT CTCTTCTAGACCATACCAAATTTGGACATATTTATATCATGTTTCTATAATAAATTGGGAACAATTTTGTTCATATGTTA TATGCTTTTATTTACTTCCTTGTTTGCATGAATCATTGAATGTGGGGGCTATAAGTTAATGTCTATTTGCATATGAATTG AATTATTGTGAAAGCACAATTACTTCATAAAGAAAAGTTTTGGTCTTAAGAGTGGTTTTTTTTATAAGCGGTCATAAGAG TGGTAATGTCTGTTAGCACTAGCGCCAATTTATATCTAAACATAATTTTATTAGTATGACATCCAGCTGAGAGACCTGAA ATTTTTC
CDS sequence (LotjaGi5g1v0329300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATCCATCAACATCATCACAACAATGTCATTGACCAGCTAGAACAAAATGAAAATGTTTCTTCTGTCTTGGATGC TCTTTACTGTGATGAAGAAAAATGGGAGGAAGAGGAAGTAGAACAAGTGGTTGGAGAGTTATCTGAAGAAGAAACAAGTG ATGTGACAACAAACAATGACCCTAACAACACTTGTTCTCTGTTTCCCCTGCTTTTGTTGGAGCAAGACTTGTTCTGGGAA GATGAAGAACTCAACTCTCTCTTCTCCAAAGAGAAGATCCAACACCAAAACTATTATAATGATGTGAACTCGGACCCTTT TCTCTCTCAGCCTCGTCATGAGGCAGTGAAATGGATGCTTAAAGTCAATGCTCATTATGGATTCTCTGCTCTCACTGCAA CACTTGCTGTTACCTACTTTGATAACTTCCTTTTGAGCTTCCATTTTCAAAGTGAGAAGCCATGGATGATCCAGCTTGCT GCTGTTACTTGCATCTCTTTGGCAGCTAAAGTTGAAGAAACCCAAGTGCCACTTCTCTTAGACCTTCAAGTGCAAGATGC TAAGTTTGTGTTTGAGGCAAAGACCATTCTGAAAATGGAGCTTCTGGTTCTGTCCACACTCAAATGGAAGATGCATCCTG TGACTCCACTTTCATTTCTGGATCACATTATCAGAAGGCTTGGATTGAAAACACACCTTCATTGGGAGTTTCTCAGGCGC TGTGAGCATCTTCTTTTGTCTGTGCTTTTAGATTCAAGATTTGTTGGTGTTCTTCCTTCTGTGTTGGCCACTGCAACAAT GCTGCATGTTATAGACCAGATTGAGAAGAGTGATGGGGTGGAATACAAAAAGCAGCTTCTGGGTGTTCTCAAAATTAACA AGGGGAAAGTAGATGAATGCTATGATGCCATGCTTGAGCTTACAAATGCCAATGATTATGATGATAACAAGAAGCTTAAT AAGCGCAAGTATGAGGAAATAATCCCTGGTAGCCCAAGTGGCGTCATTGATGCTGCATTTAACTCTGATGGTTCCAACGA TTCGTGGACAGTGGGGTCATCATTGTTTTCATCCTCAGGCCCAGAGTCTCCTCTGTTCAAGAAAAGCAGAACCCAAATGA AATTGTCACCACTTAACAGGGTCATTGTTGGAATTGTTAGCACTTCACCTTGA
Protein sequence (LotjaGi5g1v0329300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIHQHHHNNVIDQLEQNENVSSVLDALYCDEEKWEEEEVEQVVGELSEEETSDVTTNNDPNNTCSLFPLLLLEQDLFWE DEELNSLFSKEKIQHQNYYNDVNSDPFLSQPRHEAVKWMLKVNAHYGFSALTATLAVTYFDNFLLSFHFQSEKPWMIQLA AVTCISLAAKVEETQVPLLLDLQVQDAKFVFEAKTILKMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRR CEHLLLSVLLDSRFVGVLPSVLATATMLHVIDQIEKSDGVEYKKQLLGVLKINKGKVDECYDAMLELTNANDYDDNKKLN KRKYEEIIPGSPSGVIDAAFNSDGSNDSWTVGSSLFSSSGPESPLFKKSRTQMKLSPLNRVIVGIVSTSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 375 | 356 | 2.1E-130 | ||
| PANTHER | 20 | 375 | 356 | 2.1E-130 | – | |
| SUPERFAMILY | 78 | 212 | 135 | 4.76E-32 | ||
| Pfam | 90 | 211 | 122 | 4.0E-24 | ||
| Gene3D | 90 | 304 | 215 | 1.9E-51 | – | |
| Gene3D | 95 | 212 | 118 | 1.9E-51 | – | |
| CDD | 112 | 204 | 93 | 1.25794E-14 | ||
| SMART | 117 | 205 | 89 | 5.4E-13 | ||
| SUPERFAMILY | 195 | 309 | 115 | 1.13E-5 | ||
| SMART | 214 | 333 | 120 | 2.1E-12 | ||
| Pfam | 214 | 325 | 112 | 7.1E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi5g1v0329300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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