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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0338100 |
| Transcript ID | LotjaGi5g1v0338100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Avr9/Cf-9 rapidly elicited protein; TAIR: AT1G68350.1 cotton fiber protein; Swiss-Prot: sp|P39692|MET10_YEAST Sulfite reductase [NADPH] flavoprotein component; TrEMBL-Plants: tr|A0A1J7IFJ0|A0A1J7IFJ0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0338100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65530815..65531790) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCTCAGTGAGAATATTGAAAATCAAACAGAAGTGAAGTTAAATCGATCAGTTAAACAGGAAACTTACAATGGAGGGA ATGGCAGGGCAACTAGGAGGGTTTCAACGGCTAGTTTGGCACGTTCCTTCAATATAGTAACCAGAAAACACAACCGACCA CACCTTTGACAGATTGGCTCCATCACTTTTCATTTCACCTTTTTCTATCCTTAAAGCAAACTCTTCACCATGCAATCTCA ACCACAACCTTCATTCACTGCAATCTCCACACACACACACACATTCTCCTACAACTCCACAACCAAAAAATGACCAGAAA AAGGTTGCTCATTTTCCACAAAATCTCAAATTCCCCAACACTCTCTGTTCTCATCCACAAATTACGAAAACCCATCATCC CAAAGCTTCTATTGCTCAAGAAATTTAGGAAGGGCAAGGAGTTTAAGCACCTGAAACTTTATAACTATCAGTTCTTCTCT GCTTCAAGTTCAAGCACTCCCCTCATTCATTACCATCGAAACCAGTTCAATAGTAGAAGGAACAGCGGTTTGTGTGCATT CTTCTATCTGTATTGTTGCTTGGGGAGCTTGAAAACAGAAGAAAGAGGTAGCAGTGGTTGTGGGGAGTGCAAGCTCGAGG CCCTACCACCGCCAGCCACTGAAATTGAAGATGCTAACGAAGCAGAGGATTTGTTTGATTCAGGGGATGATGCTGATGAA TATGGATCAGTTGATGAAAAAGCTGAGAGGTTCATTGAGAGATTCTATCAGGAGATGAGAATGCAGAGGCAGGAATCCAT ATAGTTCTGTATTATACTCTTATGGTTCTCCGCGCCAGATTTGTTCATTTCTTGTTCCACGAGATTGATTTTTGTTTTTC TTTTTGGAGAAATTGTGGAGTTGGTTTTGTATTCTTTGTTGTTGTTTATTAATTTGTTTGTGTAAGTTTTCAATTGTTAT ATTTGTACCATTTTTT
CDS sequence (LotjaGi5g1v0338100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAGAAAAAGGTTGCTCATTTTCCACAAAATCTCAAATTCCCCAACACTCTCTGTTCTCATCCACAAATTACGAAA ACCCATCATCCCAAAGCTTCTATTGCTCAAGAAATTTAGGAAGGGCAAGGAGTTTAAGCACCTGAAACTTTATAACTATC AGTTCTTCTCTGCTTCAAGTTCAAGCACTCCCCTCATTCATTACCATCGAAACCAGTTCAATAGTAGAAGGAACAGCGGT TTGTGTGCATTCTTCTATCTGTATTGTTGCTTGGGGAGCTTGAAAACAGAAGAAAGAGGTAGCAGTGGTTGTGGGGAGTG CAAGCTCGAGGCCCTACCACCGCCAGCCACTGAAATTGAAGATGCTAACGAAGCAGAGGATTTGTTTGATTCAGGGGATG ATGCTGATGAATATGGATCAGTTGATGAAAAAGCTGAGAGGTTCATTGAGAGATTCTATCAGGAGATGAGAATGCAGAGG CAGGAATCCATATAG
Protein sequence (LotjaGi5g1v0338100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRKRLLIFHKISNSPTLSVLIHKLRKPIIPKLLLLKKFRKGKEFKHLKLYNYQFFSASSSSTPLIHYHRNQFNSRRNSG LCAFFYLYCCLGSLKTEERGSSGCGECKLEALPPPATEIEDANEAEDLFDSGDDADEYGSVDEKAERFIERFYQEMRMQR QESI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 164 | 164 | 2.2E-38 | – | |
| PANTHER | 1 | 164 | 164 | 2.2E-38 | – | |
| Pfam | 140 | 164 | 25 | 1.1E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0338100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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