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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0340000 |
| Transcript ID | LotjaGi5g1v0340000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein isoform 1; TAIR: AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LFD5|BPA1_ARATH Binding partner of ACD11 1; TrEMBL-Plants: tr|I3SUA7|I3SUA7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0340000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65716545..65721415) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTATTTGGGTCAATCCTTCCGGTTCAATCACGCATACGCTAACGCGGTTTAACCCGTTGGCCAAGCCCTTATGTGCT TTCCACTCTACAGCACTCGCACGTGCAACTCAAACCCGGCACGTGTTCCCTAGTCCTCTCACTCAGATAAAACTCTCGAA GCGCCTAAACCGTTCTCTTCCTCGCAATCTCTGAAACCCCCATTTCTCCAATTTCTCAACGCTCAGTTCCGCTGCTGTCA CTGCTCGCCGGAGATGACGGTGAGTTCCGATCGCATCCCTATACCATTTCATTCCTCGATTCATTCCTTTGAAGATCTTG TATTTGATACTGTATATCAGTGTATTTTATTAGCTAGCCATTTCTACTTTTCTAGTAGCAAAATCATGATCCGTTTCGTA TATGGATGAGATTTCGCACTTATCTCGATGGTAGCTTTGTTTAGAGTAGATCTGTCACAGTCTTCTTTGAAGAAGATCTT TGTTTTTGATTTCGTGTTTGTGTTGTGATGTTTGGTACTTGATTTCAATTAGGTAAACGAAGATTTGTTTCTGTGTTTTT TGACTTTGGGAAGAAATGGATAGGCTATTTGATTCTTTGCTTTCCAGTAAATGTAATGTTTGTTCTGTTTGGATGTAGTA ATTGTTATGGTGCTGTGGATGGATCTCATTTTTTATGTTATTTGGATTATACAACATATGTGAAATGATTAGAATAGACA TGCATTTTTGTATAGTATGTGTTGCAATTTTATTCAAGAGATCACTGTAATGGACTTAAATTGATATTTTGATTGAAATA AGGATAATCATCTATTCAGTCCCTCATTTGGCTCGGTGAAATGGGTTGAAATTCGAATAACATGACTCTATCTTTTCCTT TGAACTTATGTTGTCTGATGATTATTTTCAAGTAACTTTGTTTGGTAGAAAAACAGCATACACAGTTATGACTTGTCGAC CTGTCCTTTTCAAAGGGGGACCGGATTGTATGATCATGAACTATGTGCATATTTATTTGCCGGCTGGTTGAGTAATGTGT AGTCATGGATTTGTTTTCAACATCTAGCTTTTGGGCTTAGGTGTTTGGCTTTCTGCTTCATTTGTCATTTATTGCTCTTT TAAACTACTTAATTTCTCAAAGTTTTGTTATTATATATAATACTCTTTTACATCCCCTCTTTTCTCACCTTTTACACAAG ATTGAGTTGCATCTAATATGGACAGTAGTTATGAGGAACTATTATAAACATGCAAAAACCAAAAATGGAATGAGTGGATT GACAGCTTGCAGTTAGAACATTTGTTATTTACATGTAACTTCATTTTATATCATTACTGATAGTCATAGGAGACACCTCA CATCATGAGGGAAGTTACCATGTTTTAGTATGGATCAGTAGTAATGTAGTATCATACTTAAGTGTGAGATTCTGGAACAT ATAAGTACATAATCGTAGGTGGATTCCCCATAAGTTTTTAAACATGCTGTGTTCTTTTTTTTGCAGATCAAAACCATAAA AGTCAGTAATGTTTCCTTGGGAGCATCTGAACGAGACATTAAGGAGTTCTTTTCCTTTTCTGGTGACATTGAATATGTTG AAATGCAGAGGTCAGTAAGTTTCTGTGCTTGGTGTTCAACAACTTTTTAAGTTTATTTTTATTCTTAGGTTTTATCATAC AAATAATATGTTGATGTATTAATGCAGTCATGATGAACGATCTCAAATTGCATATGTTACTTTTAAGGATTCACAAGGTG CTGAGACTGCGGTATTACTATCGGTAAACTACCTATCATTAATCCCTCTGTTAATATAGATATTTGTATCAAACTGTTCT TTTATGAAGTAGTTAAGTATGTCAAACACCTAATAATTTTTTTATGTTATTGAAGTTCAAAACCATATATTTGTTGGGAG TTCATGATTTAGAACTATGGAATTTTTGGTCATCATCCTAGAGACATTACATTTAGCTGACATATTCAGCTTTTTGGTTA GATAATGCAGTATCAGTGAATAAATATTCGATATCTCACACATTTCATACACTAGCAATGGTGTTGGTAAGAGAGGAAGT TATCTGTGTTTCTATCATCTGCCATAATTTGAATTGTATTTGTTGTTAGTTAGGAGTTGTTTGCCCTAAATTACCATTCC TACCTAATGCTTGTTCTATAAATACACTCTTTGCATCTTTGAATAATATGGAACCTCCTTGGTTTATTTTCTCTCTCTTG AGAGTTCTCTCTTCCTTCCACGCCCCAAGTCATCCCAGTTTATTCAAATGGTATGAGAGCTTCAAGGAGCTCACCACTTC CGTGTGCTACGCATACAGAGGTTAGCCACCACTGTCACCAGCGATAGTGCATCATGAGTAGCAATATTGAAGTTGCTCCT TTTTGTTACTCCCTTTATGGTTAGGACCATACTCGTTTGGTTGCACGAATACCTCATTGAGTTGGTTGTTTTGGTGGCTC AGGATCTTCACACTATCCCTCAAACTAGTTGTCTATAATCATCTGTTTTTTTGCTCTCTTGGTAACTAACTACCTGGTGG CCTAGTTTGAAGGATAGAAAACTAGTACCACCAGTTTGCAACGATGGCTTCCAAAAAAATTTGCTTCGTTGCTCAAGCTG GTTGTGATAAGTGTCTACCGCCCATCACCTGTGGGGACTGGGGTGCTATTTGATACTCTCACACAATTCACATGCTAGAA GTGGTTTTGGTTAGAGTGGTTAGAGAGGAAGTTATTTATGTTTCTGTATCTGTTATAATTTCTGTTATATATGTTGTTAG TTAGTCAGGAGTTATTCACCTTCAGTTACCATTCTTCCCTGTTGCTTGTTTAATAAATATACACTTCATATCTTCTTCTG TATCTTTGAATAATATATTTTGTTTATTTTGCAAGTTTGCTGGTGCTAATCCGAGCTTGTGTTGCTTGTATTCCTAGCCA CTAGTTGTCTTGTTTATAGTTGGTTTAATGTAGAAACGTAAAAGAATAGCTCTTAGAAGTATGCTATGTTGCCTCTGCTT TGGGATGTGTCTGATGTATCATTTTACTTGGGTACTACATTTAATTTTATGATTGGTTATACTTTGCGTTTATAACATTG TTCACTACTTGCTGTATTGGTAAAAGAAAATTGGTCCAAAGACATGCAACATCCCATTGCTCCTTGAAAGATATCTACAA CATCAAATTGCTTTTTTGATTTCTCATTTTTACGGTAAAATAGATCCCTAAAATGATAGCAAATTGATCCTTGATGGATG AAGCTGGTGGAGTTAATTATCATTGTATACCAATTTGATTTAAATGATAATGGAGAAGCAGCCTGATGCTGTGTATATTT TTCCAAATGGGTGTTAACATTCTGCTAATGTTAATATTGCCTCTAATCATATAAAAATTAACCGAGTTCCAATATATCAG GGAGCAACGATAGTTGATTTGCCAGTTAGCATAGCTCTGGATCCAGATTACCAGGTTCCCCCTGCTGCCTTGGCATCATC TGTAAGCTTTTCAAAGATCCTCTACTTATTGTGCTTAAGTAACTAGGTTGTTTTTTCCTAACATCTGTTAATGTTTTTCA GGAAACAGAGGGCAAAGGTCCTAGTGGTCCTGAATCTGCTCTACGGAAGGCAGAGGATGTGGTCACAAGCATGCTTGCGA AGGGCTTTATCTTGGGGAAGGATGCTGTCAACAAAGCCAAGACTCTTGATGAGAAACACCAGTTATCTTCAACAGCCTCA GCAAAGGTTTCATCAATTGACCAAAAACTTGGGCTTACTGAGAAAATAAGTGCCGGTGCTTCAGTTGTGAGTGCCGGTGC TTCAGTTGTGACTGACAGAGTTCGAGAAGTGGACCAAAAGTTTCAGGTTTCAGAGAAGACCAAATCAGCATTTGCAGTTG CAGAACAGAAAGTCAGTACTGCAGGGTCTGCTATAATGAAGAATCGCTATGTACTCACTGGGGCTACCTGGGTAACAGGT GCTTTTAGTAAGGTTGCTAAGGCAGCTGGGGATGTAGGACAGAAGACAAAAGAGAAACTGGAAAGTGTACAAGAGGAAGA AAAGCGAAAAGTAGAAGACCAGTATGCACATGTCCTTTCTGAGTCCCCAAAAGCTGCAGCAACAAGTGAGGTGCACTCTT CCAAGCCTGCTCCTGCTCAGGGCTTGATCCTTTGATTTGCATCCTGTATATACCTTATTTTGAAACTCCTGTGAATTGTT TCCATATATCAGCACAACTTTGATAGATTTTACTAGTTATTGGACAGGTTTGCAGTTATTTGATTGACTTCTTAAGCAAA GATAAACTGAATTTCCCAGACTTAAATGTTTTTTCTCCTGTTATCTCGAGCATTCCCCCCATTTGTTTGTTAGTGTAGCA TTCGCCCTTGAGGCGCATCTGGCGCTTATTTGGTATATTTTGATGGACTCATGGAGGAAAAGATAGGGGAATGGAAGGTT TTCAGTCGAACTCATGTTGTTTTCAGAGTGTTTATAGTGTTCGATACTAATTGTGTGCAAGTTCACAATGCTTAAGAGTT TCGTTCATTTTCTTATCTCAAAATGAATGTAAATATTGGTTTGCATTGATGATAACGGATATCTAAACATAGCTAGAATC AAAGGAGATGGTAGTGGGGATGAAGAATTTCCATGGGATCCTGATTGTCCAATTATGGATTTTTATTGTTATGGATTTAG GTTCCGTGCTAGTGTTTTATTTTCCATTGTTCTTCTAAAAAAGAAGAAAGCAAACTGAAGCCTGTTCTGCAATAGCAGTT TGCTGGTTCGATGCTTGTTTTACATATATTGGGACTCTTTCACTTTAGAAAGTAATTCAAAATTAAGCAAC
CDS sequence (LotjaGi5g1v0340000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGATCAAAACCATAAAAGTCAGTAATGTTTCCTTGGGAGCATCTGAACGAGACATTAAGGAGTTCTTTTCCTTTTC TGGTGACATTGAATATGTTGAAATGCAGAGTCATGATGAACGATCTCAAATTGCATATGTTACTTTTAAGGATTCACAAG GTGCTGAGACTGCGGTATTACTATCGGGAGCAACGATAGTTGATTTGCCAGTTAGCATAGCTCTGGATCCAGATTACCAG GTTCCCCCTGCTGCCTTGGCATCATCTGAAACAGAGGGCAAAGGTCCTAGTGGTCCTGAATCTGCTCTACGGAAGGCAGA GGATGTGGTCACAAGCATGCTTGCGAAGGGCTTTATCTTGGGGAAGGATGCTGTCAACAAAGCCAAGACTCTTGATGAGA AACACCAGTTATCTTCAACAGCCTCAGCAAAGGTTTCATCAATTGACCAAAAACTTGGGCTTACTGAGAAAATAAGTGCC GGTGCTTCAGTTGTGAGTGCCGGTGCTTCAGTTGTGACTGACAGAGTTCGAGAAGTGGACCAAAAGTTTCAGGTTTCAGA GAAGACCAAATCAGCATTTGCAGTTGCAGAACAGAAAGTCAGTACTGCAGGGTCTGCTATAATGAAGAATCGCTATGTAC TCACTGGGGCTACCTGGGTAACAGGTGCTTTTAGTAAGGTTGCTAAGGCAGCTGGGGATGTAGGACAGAAGACAAAAGAG AAACTGGAAAGTGTACAAGAGGAAGAAAAGCGAAAAGTAGAAGACCAGTATGCACATGTCCTTTCTGAGTCCCCAAAAGC TGCAGCAACAAGTGAGGTGCACTCTTCCAAGCCTGCTCCTGCTCAGGGCTTGATCCTTTGA
Protein sequence (LotjaGi5g1v0340000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLSGATIVDLPVSIALDPDYQ VPPAALASSETEGKGPSGPESALRKAEDVVTSMLAKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKISA GASVVSAGASVVTDRVREVDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKE KLESVQEEEKRKVEDQYAHVLSESPKAAATSEVHSSKPAPAQGLIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 8.5E-125 | – | |
| PANTHER | 1 | 274 | 274 | 8.5E-125 | – | |
| SUPERFAMILY | 4 | 77 | 74 | 5.84E-12 | ||
| Gene3D | 4 | 74 | 71 | 2.7E-9 | ||
| ProSiteProfiles | 4 | 76 | 73 | 10.633 | ||
| SMART | 5 | 74 | 70 | 3.2E-7 | ||
| Pfam | 7 | 66 | 60 | 2.8E-7 | ||
| MobiDBLite | 84 | 103 | 20 | - | – | |
| MobiDBLite | 242 | 259 | 18 | - | – | |
| MobiDBLite | 242 | 286 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0340000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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