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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0340200 |
| Transcript ID | LotjaGi5g1v0340200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger constans-like protein; TAIR: AT1G25440.1 B-box type zinc finger protein with CCT domain-containing protein; Swiss-Prot: sp|Q8RWD0|COL16_ARATH Zinc finger protein CONSTANS-LIKE 16; TrEMBL-Plants: tr|A0A072VQB9|A0A072VQB9_MEDTR Zinc finger constans-like protein; Found in the gene: LotjaGi5g1v0340200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65743184..65746100) extracted from Lotus japonicus Gifu genome v1.2.
GATGTAATGATATTTGTCTAAATTCCCATCCAAAAACAAATATCTGTCATAAGATGAGACGATTCCAAGTAAGAAATGGA TAGTTTCAGCTGGCAAAACACACTTGGTCACTCTGTCACACGAGGTCATTGAAGCAGATATAATTGGTAAAATGCCATGG CAGAAAAGTGAGTGGGATAGAAAGAAAGATAGATTAGAAAGAGGAATTGTGAAATTGGATCGGATCCATGAGGGGACAGC AGAAACAAAAGTCAGTGACTAGTAGCCCATGTAAGACGCTACTGGATCAGCACGAGAAATTTACTAACAACAAAAGGGTC TCATTCACACATTACATTTTTCTTTCTTTCCAAAAACCACCATGCTCATCCATACCCCACGTGGGCCCCCACCAGAAATC CCATAGATTAGAAACACACCCAATCAGAAACCAGAGTTTAAGATCAACTTTCCAAGTTCCACCAATGAAAAACCAGATAA GGCCCTTTCCCTTCACTTGTAGGGCCCTATCCCTCAATCCTTTCACTGTGTAAAGAGTCCCAAAAGTGCAACCCTCGCTG TTAAATACACTGCAAAAGCGCTTCTTGTGGGTCACCAACACTTTTTGTTAAATAAAGAAAGAAAAAATCTAAACCAAAAA ATCATCATTCAAGTTCAAAAACACATAGCAGAAAAGAAAAAAAGAAAAAAACACTCACTCTTTCTCTGCTTTCTTCAACT GGTGCTGTTAATATCAGTACAGTGTGATGAGTTCTACAAAGAACGTGGCAAACGCGGTTGGTGGCAGAACCGCCAGAGCC TGTGACAGCTGCATAACCAAGAGAGCACGGTGGTACTGTGCTGCCGACGATGCTTTCCTATGTCAAGCTTGTGACTCCTC TGTTCACTCTGCAAATCCACTAGCTCGCAGGCATGAGAGGGTGCGGTTGAAAACAGCGTCGTACAAGTCTGGTGGTGGTG GTAGTGAGCCGTCGTGGCACGGTGGCTTCACTAAGAAAGCGAGAACGCCAAGGCAGGGGAAAGGTATGAAACAGAGGAAC AACCCGTTTCATCTGGTGCCGGAGGTGGGGTTGGATGAGGTGAATTCCAATTCTCATGAAGAGAATGAGGAGCATGAGCA GCTTCTGTACAGGGTTCCGGTTTATGATCCTTTTGTGGGGGCTGAGCTATGCAGCACTCCGAATTCTTCTTTGAATTCAG CTGTGGTGGCAGTGGCAAATGCTTCTGATTCAGATTCTGGTCCTAAGGTTCAGGAGGATTATGAGTTGGAAAGCTTGCAG GGGATTCTTATTCCTTCTGATGTAGAGCTTGCTGAGTTTGCTGCTGATGTTGAGAGCTTGTTGGGGAGGGGGTTGGAAAA TGAGTGCATGGGGATGGAAGAGTTGGGGCTGATTGATGCTAGCAAACAAGAGGAGTGGGAGTGTTCTGTGGGTAGTGAGA AGGTGAAGGTGGAAGAGGAAGAGGGACAACAAGTGGGTGGTGGGGAGATGGGAAGAGAATCAATATCTTTTGAGTTGAAT TTTGATTATGATGATTCTCTTGAAACATGTGAGGATGAGGTGAAGGAGATTAATGGTGATGATGATATGGGAAAGGGTAG TTCAGAGTTGATTAAAGAAAATGGAAAAAGGAAGATTTTGCAGCTTGATTATGATGCAGTGATCATTGCCTGGTCTGGCC AAAAGTCTCCTTGGACAACTGGTGCTAAACCAGACTTGGATCTTGAAGAGTTCTGGCCTGAATGCATGGTATTGGAATTT ATCTCTTTTGTCCTATTTGATTCATTATTAGCCACTTTTATAGTCCAATATTTGAATTATTATAGTTTTTCCTTTCTGGG ATGCAGATTCACAACTTACTTTAAGATTCTTCTCTAGTTGTTTTTCTCTAATAAAAGCTGACTCTTGATTCCACTTTTTA AACAATTCATTATTTAGTGGTGCTATTTTTTATACTAGCTTAACACAGTGTAAACAGACGTTAGCACTCGATTTAAAAAA AATGTGTGCAGAACTTTTGTTATGGATTTCGAGGAAAGTCTGTTAAACTCAATTGATATCTAAACATATACTAATACATT TGTTACACATACAAAATTGAACATTTAAACTAATCATTAGTTCGCACACGTGCTGATTTAGATTATTTATCTGCTTTTAA ATTTTGGAATTAGTCTAAATTTTTGTCTAGTAGTTTGATTATGTTAATTTTATACTATGAATATTTAGGCTTAGGCCATA TATGGTATATATATGACTAAGAAGCCTTTTGGTGTTTTTTTCATGAAACAGGGAACTTGTGGAACAGAGGTTCAACATCC TTATGGTGGTGAATGGAGCAGTGGATTTGGGTGTCATCCTGCAGTAATGGCAGATGGTGGCAGAGAGGCAAGGGTGTTAA GATACAGAGAAAAGCGGCGAAGAAGGTTGTTCTCAAAAAAGATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGA CCCAGGATGAAAGGTAGGTTTGTGAAGAGGGCTTCCTTTGCAGCAGCACCAACCACATTTCCTTTGCTAAATAAATAAGG ATGAACTAGCAAGCATTCATTGCTCTACAAGCACATTTTTGTACATGTTTGCTAAACGTTGTATTTTGCTATTTTATGTG AGCTTTTGTTTCATTTTCCCCCCTTTGTATATAACATTTTTGTAAGTTAATAAATTGGTCTAACAATTCAAAATAATTTA TAAATCAATCTTATGATATATTTCGAGAGTTCTATAAATCATCTGAGATTTCCATCATTACAAACTCGTCTTAAAAAAAT CATTATAATCTCCTCAATGCAATCAGAGTGTGTTTGATAAGTTTGTAATCTCTTGAAGGCTTGTGGCGCCCCCTCTCTTG CCTCTTCCATTTTTTTCATTCTTCATCTTTTTTAAGG
CDS sequence (LotjaGi5g1v0340200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCTACAAAGAACGTGGCAAACGCGGTTGGTGGCAGAACCGCCAGAGCCTGTGACAGCTGCATAACCAAGAGAGC ACGGTGGTACTGTGCTGCCGACGATGCTTTCCTATGTCAAGCTTGTGACTCCTCTGTTCACTCTGCAAATCCACTAGCTC GCAGGCATGAGAGGGTGCGGTTGAAAACAGCGTCGTACAAGTCTGGTGGTGGTGGTAGTGAGCCGTCGTGGCACGGTGGC TTCACTAAGAAAGCGAGAACGCCAAGGCAGGGGAAAGGTATGAAACAGAGGAACAACCCGTTTCATCTGGTGCCGGAGGT GGGGTTGGATGAGGTGAATTCCAATTCTCATGAAGAGAATGAGGAGCATGAGCAGCTTCTGTACAGGGTTCCGGTTTATG ATCCTTTTGTGGGGGCTGAGCTATGCAGCACTCCGAATTCTTCTTTGAATTCAGCTGTGGTGGCAGTGGCAAATGCTTCT GATTCAGATTCTGGTCCTAAGGTTCAGGAGGATTATGAGTTGGAAAGCTTGCAGGGGATTCTTATTCCTTCTGATGTAGA GCTTGCTGAGTTTGCTGCTGATGTTGAGAGCTTGTTGGGGAGGGGGTTGGAAAATGAGTGCATGGGGATGGAAGAGTTGG GGCTGATTGATGCTAGCAAACAAGAGGAGTGGGAGTGTTCTGTGGGTAGTGAGAAGGTGAAGGTGGAAGAGGAAGAGGGA CAACAAGTGGGTGGTGGGGAGATGGGAAGAGAATCAATATCTTTTGAGTTGAATTTTGATTATGATGATTCTCTTGAAAC ATGTGAGGATGAGGTGAAGGAGATTAATGGTGATGATGATATGGGAAAGGGTAGTTCAGAGTTGATTAAAGAAAATGGAA AAAGGAAGATTTTGCAGCTTGATTATGATGCAGTGATCATTGCCTGGTCTGGCCAAAAGTCTCCTTGGACAACTGGTGCT AAACCAGACTTGGATCTTGAAGAGTTCTGGCCTGAATGCATGGGAACTTGTGGAACAGAGGTTCAACATCCTTATGGTGG TGAATGGAGCAGTGGATTTGGGTGTCATCCTGCAGTAATGGCAGATGGTGGCAGAGAGGCAAGGGTGTTAAGATACAGAG AAAAGCGGCGAAGAAGGTTGTTCTCAAAAAAGATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGGATG AAAGGTAGGTTTGTGAAGAGGGCTTCCTTTGCAGCAGCACCAACCACATTTCCTTTGCTAAATAAATAA
Protein sequence (LotjaGi5g1v0340200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTKNVANAVGGRTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSGGGGSEPSWHGG FTKKARTPRQGKGMKQRNNPFHLVPEVGLDEVNSNSHEENEEHEQLLYRVPVYDPFVGAELCSTPNSSLNSAVVAVANAS DSDSGPKVQEDYELESLQGILIPSDVELAEFAADVESLLGRGLENECMGMEELGLIDASKQEEWECSVGSEKVKVEEEEG QQVGGGEMGRESISFELNFDYDDSLETCEDEVKEINGDDDMGKGSSELIKENGKRKILQLDYDAVIIAWSGQKSPWTTGA KPDLDLEEFWPECMGTCGTEVQHPYGGEWSSGFGCHPAVMADGGREARVLRYREKRRRRLFSKKIRYEVRKLNAEKRPRM KGRFVKRASFAAAPTTFPLLNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 418 | 418 | 5.9E-132 | – | |
| PANTHER | 1 | 418 | 418 | 5.9E-132 | – | |
| SMART | 14 | 61 | 48 | 4.4E-10 | ||
| ProSiteProfiles | 14 | 61 | 48 | 10.85 | ||
| Pfam | 16 | 59 | 44 | 5.8E-8 | ||
| CDD | 17 | 61 | 45 | 1.05396E-10 | ||
| MobiDBLite | 64 | 100 | 37 | - | – | |
| Pfam | 365 | 407 | 43 | 6.3E-17 | ||
| ProSiteProfiles | 365 | 407 | 43 | 16.093 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0340200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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