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LotjaGi5g1v0351800.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0351800
Transcript ID	LotjaGi5g1v0351800.1
Lotus japonicus genome version	Gifu v1.2
Description	Ribonuclease H; TAIR: AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp\|P0C2F6\|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr\|A0A151RDK4\|A0A151RDK4_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi5g1v0351800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:66778525..66779473) extracted from Lotus japonicus Gifu genome v1.2.

GTTCCGGAAAAAATTCGGGTCTTTGTCTGGTTTATCATGCAGGGTGCGATCCAAGTCAATAGCTTTCGGTTCAGATGCAA GCTTGCAAATTCCCCTGCTTGCCCGCGCTGTCAACATCAATTCGAGGACATCTTGCATTGCCTCAGGGACTGTAGAATTG CGCGTGATGTCTGGGTTCGGCTTAATGCTCTCGGGTGGCCAGGCTTCTTTGTGTGTAATGCCCAAGCCTGGGTAAAATCG CAAGCTCAAGGTCCTCATGCTTCTCTGTTTTTTACAGCAATATGAGGTATATGGAGATGGAGGAATAATGAAGTCCTAGG CGATAACGATTGGACAATGGTAAGCACTGTGAATTGGATTATTACAGAGCACAGGGATTATGATCTATTACTCACGAGAG GTCCGTCGTTGTCCATGGTCGACGATGCTCCAGTCCGTTGGGCTCCCCCTGTTTCCGGTGAGTACAAAATGAACTCAGAT GGGGCCTTTAAGCATGATGATGATCGAATGGGAATGGGTGGCATTGTTCGGGATGCCCATGGTGCTTGGATATCTGGTTT CTATGCAGGTAGCCTAGGAGGAGATGCTCTTCGGGCGGAGATTGCAGCTCTAAAGCATGGTCTAACACTGTTGTGGAATG CCAATGTTAGGAGAGCTACTTGCGAAGTTGATTGTTTGGATATTGTGAAAGCTTTGGAGAATGATCGGTATCAGTTTCAT GCCTTGGCGTCTGAGCTCCTGGATATTCGTCTTCTCCTGGATCGGGATTGGACTGTTACTCTTGCTTACGTCCCTAGAGA GGCGAATGCAGCAGCTGATTGTCTCGCAGGACTTGGAGCTAGCCTCCTTTGCCCCCTGACTTGTCTTGAGAGCCCTCCTC AAGAGCTTCAGCCGATTCTGGCTAGAGATTTGTTAGCTTTGTAGTTTTTGTTTCTTGCCTGTTTAATTT

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0351800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTAAGCACTGTGAATTGGATTATTACAGAGCACAGGGATTATGATCTATTACTCACGAGAGGTCCGTCGTTGTCCAT GGTCGACGATGCTCCAGTCCGTTGGGCTCCCCCTGTTTCCGGTGAGTACAAAATGAACTCAGATGGGGCCTTTAAGCATG ATGATGATCGAATGGGAATGGGTGGCATTGTTCGGGATGCCCATGGTGCTTGGATATCTGGTTTCTATGCAGGTAGCCTA GGAGGAGATGCTCTTCGGGCGGAGATTGCAGCTCTAAAGCATGGTCTAACACTGTTGTGGAATGCCAATGTTAGGAGAGC TACTTGCGAAGTTGATTGTTTGGATATTGTGAAAGCTTTGGAGAATGATCGGTATCAGTTTCATGCCTTGGCGTCTGAGC TCCTGGATATTCGTCTTCTCCTGGATCGGGATTGGACTGTTACTCTTGCTTACGTCCCTAGAGAGGCGAATGCAGCAGCT GATTGTCTCGCAGGACTTGGAGCTAGCCTCCTTTGCCCCCTGACTTGTCTTGAGAGCCCTCCTCAAGAGCTTCAGCCGAT TCTGGCTAGAGATTTGTTAGCTTTGTAG

Download CDS Sequence

Protein sequence (LotjaGi5g1v0351800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVSTVNWIITEHRDYDLLLTRGPSLSMVDDAPVRWAPPVSGEYKMNSDGAFKHDDDRMGMGGIVRDAHGAWISGFYAGSL GGDALRAEIAALKHGLTLLWNANVRRATCEVDCLDIVKALENDRYQFHALASELLDIRLLLDRDWTVTLAYVPREANAAA DCLAGLGASLLCPLTCLESPPQELQPILARDLLAL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR46736:SF5 View details on PTHR46736:SF5 Search for proteins/transripts with this domain View external data on PTHR46736:SF5	33	193	161	1.6E-33	–
PANTHER	PTHR46736 View details on PTHR46736 Search for proteins/transripts with this domain View external data on PTHR46736	33	193	161	1.6E-33	–
Gene3D	G3DSA:3.30.420.10 View details on G3DSA:3.30.420.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.420.10	41	169	129	5.1E-16	IPR036397 Show description in modal box View details on IPR036397 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53098 View details on SSF53098 Search for proteins/transripts with this domain View external data on SSF53098	43	172	130	2.66E-15	IPR012337 Show description in modal box View details on IPR012337 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd06222 View details on cd06222 Search for proteins/transripts with this domain View external data on cd06222	46	164	119	1.45811E-30	–
Pfam	PF13456 View details on PF13456 Search for proteins/transripts with this domain View external data on PF13456	46	164	119	6.2E-22	IPR002156 Show description in modal box View details on IPR002156 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363
GO:0004523 View details of GO:0004523 AmiGO InterPro QuickGO	Molecular function	RNA-DNA hybrid ribonuclease activity	Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.	Subterm of View details of GO:0016891

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0351800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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