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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0354100 |
| Transcript ID | LotjaGi5g1v0354100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear speckle splicing regulatory protein 1; TAIR: AT2G27285.1 nuclear speckle splicing regulatory-like protein (DUF2040); Swiss-Prot: sp|Q568R1|NSRP1_DANRE Nuclear speckle splicing regulatory protein 1; TrEMBL-Plants: tr|I3SXM2|I3SXM2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0354100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66954935..66962893) extracted from Lotus japonicus Gifu genome v1.2.
GAGGGTTTCCTCGATGAATCCAGCCTCAAAGCTTCCCTTTCCAATACCTTTGTTGTCCTAATAACCTATGAATACTTTTT GGAATGTTTTGGAAAGTGTTATTGAAATTTTGCTTAGCCAAGATTTGGTTGCTAAGCGAATTTTTTCTTCATTAAATTTT CTTTTAAACTGTCTTAATTTCACTTAGTCAACCTCGACCTTGCTAAGCGAAAATAATCTTTGTTAAGCGAGAGAACTCTT CCAAAATACATACTCCCTGCCATAATAGTAATTTACGTCTATAATTGTTTAAAGGCCAAAACTAATTGGTGTTTCAGCCC AATACACATTTGCTTAACAAGAGTTACAAGATTTGTAGTTTGCTTTTTATTTATGTATGGTAATGTCATGAAATCCAATT GTGAAATCTCCCGATTAATTAAATCCAATAAAGAAGATAAGAGTTTCAATTGATTTTAAAGTTAAAGTTAATTTGATAGA CATTCAAACACCTAATCGACTCTAACCGTAGAGAATCAATACTTGCACACGCAAACATGAAACCAAATATGGTATTGAAA CAAATGTTTTTCCAACTTCATTTCATTTTATTTATAATAAAACCCATAATTTTTTTCCTACTTCATCCTCTTTCGCACAC ATTATTTTATTAGGGTATTTATTGTTAATAGCAATTACTAATCTCCTCGCCATAAATATTTGTACTAAGAGTAAATAGTG CTCGCACACATTTCTTTAAGCACATAATGTGGTGTATGTTGATCTATGTATTCTGGTGCTATATACTAGTAATATTCCTG CCTGCGCCTTTCAAGGTGGAGCAACAGTTTCCCATAATCAGGAAGGTTTTCTTTAATCAGGGGAACTTGTTTAAAATTTT GCATCCAAGCATGCAACCTAGTAAACTTGTTTGGCTCAATAAGTTTCATCCCAGCAAGTTCCTCTAAGCCTTCTAACCAA TGACTAAGGCACCCATATGCTAAGTCCACCATACTAATGTTGTTGCCTCCAAAGAACTTCTTGACCCCTAGACCTTGCTC TTCCATAATTGTGATTTTTTCTTGTGCTTTTTTCACTGCACTTGCTCTTTCTTGTTCATCTTTTGAGGGCCGGAGAAACA AATCAGTTATAGAAACGAGCTAGAAAAAATAAAACAAATGAACAACACCATTAATTCAAGACCAAATAATACCGAGTGAA TGTTCAATTCCGTCATGAAACTGTAAGATAAGTTAGTTTATAAAAGAATGAAATACCTCTCTCATATCTAACTATGAGTC TATGACCCATCGTACTCAACCAACATTTGACACGATTAGAGACGGTGAGAAATATTTCCTTCTTCTAGGAACTAATTAAC TTGTTGATGCTTACACTCTCATTCAGAGACGGAATTGAACATTCATCCATTAGGAAGTAAAATTTAGAGAATGAAAAATC AGATAATATTACCGAATCTTCTCCAAATTTAATCCAAAATCGAGCTAAGGCTCTCTCATGGTTATCCTGTGGCAGCAATG GCTTTTGTGGCCATGTTTCTTCAATGTATTCAAGAATCACAAGAGACTCTGCGATGGCTCTGCCTCCATGGATGAGCACA GGGACTTTCTTGTGAACTGGATTGGATTGTAGAAGTAGTTGGCTTTTGGTGTACCTGTCTTGTTCAATATACTCATAGCT TATACCCTTGAATTTCAAAGCCCATATGACTCTATGAACAAAAGGGCTTGACCAAAATCCTAGTAGTTTCACATCTGCCA TAGTTGCTATGCTAGGAATAGGTGTGAGAGAGATATTGGAACTTCATAAATACTGAGATTTATTTGGACTAGTCCAAAAC AGTGATGGTGGTGATTCCAAAGTTTTTGTGTGGTGTTGAAGAGTCACCATGATTCATTGAACTTGTCAATTGTACTAACC AGTTTTGGTTGTTCATCTTTCCTTTTCAGTTTTCAACTTTTGTTCAATTCCTTTGTTGTTTTGTAGACAAATTCCATTCC CCTGTTCTAGTCTGCTGGCCACAATTTGGTAAAAGATGCGCCAAATTAGGTTAGGTCCCGTTTGGAAGAGCTTGCTAGTG TTTTAGAAAAGTTATGCAAATAAGCTATCATGAATAGCTTATGAAAAAGAGTTCATGCTTATATATAGTTTATTTTCAAT TTATTTTAATAAACTTATTAAAGTAGCTTATGAATAAGTGCTTATTTCATAAGCGCTAATGGTCATAAGTGCTTAATTAA GCTGTTTTTCCAAACGGGGCCTTATTCGTTTTGGGTTTATGCAGGTCCGTTTTTGTTTATGATTGTTTAGCCCCATTGGA GGGAATTTTTTAAGAGGAGCCCATTGGATTCTGAAAATCCGTATATCGGGCCGGGCTGTAATTGGGAGGAGATGATTGGG CCTGTAGATTTGGCCCAGTCTCTTGTCTTCTTTAATTCTCTTCTCTTTCGAGCATCCAATTCCAATGCAACGACACGATT TCGACAGAGAGTTTTTCTTCCTTCTTTCTCACCTGCGCGAGACTCTGTGAGCTCCATTGCATTGCCTGTAAGTTTTCAAA ATCATATTATTCTTCTTACTATTATTTATTCATGTTCACATGTAATTTATTATTATTGAAAATTTCATTGAGTAGATAAT TTGGGTGTTGTGTTTAGTTTTTGGTTATTATGGATTTATAGGGATGAAGATTGAACAGGATTAGGAGTTGAACCAATTAG ATGGTATGGAGATGGAGATTGGAGAATTCTAGAAGGAAAAAAATGAGTAAGGGTGCAATTTTTTATGCGAAATCAACCAT GACTGATCGATCGGAGTAGGCAATATAGCAATTTTGAGGGGGCAAGGAGGCAACCAAGTGATATTGATGAGAATTCGAAA AACAAGGAAAGAGAATTTTATTTTCCTAGACAGCTATAGAGGATGGACAATGAGAGGTCTCATTGTAGATCTGATGATAG ATTATAGAAAAGATGATAGCAGGGAGGAAGCTGTTAAAACGTCAACACAGATTGGAAATTTTAATTACAATTAATTAATT ATTTTGATATTGCTAATTGAAATCTTTGGTCTCACACTATAAATCTCTACTTATATTCTGATACTTAATCGTGCATCTAC TAGGTACTGGCTTGTTGTTGAGATTTTGCTCTCATATATGTATTTCTCTAATTATTGCTATAGCTTGCTGCTTTGATACA AATGAAGTTGGAATGATACGAGCTGGATGCTTTGTTTTGTGTTCAAATTGCAGTGAAGAAGCCGGGTAAAATGAGCAAGT ATGGGTTGAACCTTCGGCCTGCCAAGCAGAAGCAGAAGCCACCAAGGCCTCCCCTCGCCACCCCTTTTGGCTTTAACGAT GATGATGAGGATGACGTCGAGAGAGAAATCGCTCTCCAGGCTGCAAAGAAAAAATCTCTCAAGGAAGTATGTTAACCTTG CTTGCCTTTTTGATACCTTTTGATCTGGTGTTTCTTATATTGACTGTTGTATTTGTTTTGTTTATGTTAGATCTTACTTT CCATCCTTTTTTTTTTTTCCTTATTAAGGTTGAGGAGCAGCAAAAGAAGGCCTTGGAAGAAGATCCATCCGTATTTGATT ATGATGGAGTCTATGAAAAAATGAAAGAGAAAGTTGCAAAACCACTGATACAAGATCGTGAAGAGAGAAAGGTAGAGTTG CAGTTCAAAGCATTCTTTTTAAATTTCAACCGAACTACCATTATTTTGTTTATAACTCAATGAAGAATCATATAGGAGAA TCTGTGGTATATTATATCATAATTATGACAATGGTGATTAGTGACAGGAAGGCACACAATACATACTTACATAATGATTG CCGGTTAAATAGATTGTATCTTTCTTATTCATTTCTTAGGATAAAAATTTGTTTTCATTTATTCAAAAAATCTGGCATTG TTTACATGATAGCAGTGAAGCCCTTTTACAGTTTGCCATCTCTGGAGTTTATTCAGACAGATTTGCAAAATCATCTAGTA GCAAGCGACAGATAGATCATCAAGTAGCACATGGAAACATAAAAATTTCACCTTTCCAAGAGTATATACAGGGTTAGTGT CAATCTGGGTTTTGGTATTTGACATGCATGGATGTAACTTCTATCTTGAAGTTGGGAGCTTCATGGCCTACACATTTTTA GAATAGTGAAAATGGCTGATAGTGGGTTCCTTGAAGCCTATGTGCTTGTTCCTCTTCAATAGTTTGGTTTAAATTTATTT TCTTGTTTTGCTTCTCTGAGAGCTAGTGCTGAAATTTGTTCTTTTCGGATTGTTTTGAGAATTGACACTGGTACTCATAG ACCTGTATTATTTGTGATGCAGCCAAAGTATATCCAAAATCTGATGAAAAAAGCCAAGGAGCGAGAGCAGTATCGCGAGA TTGTGTACGAGAAAAAGGTTGCCAAGGAGAGAGACAAAGATGATCATCTCTATGCTGACAAAGACAAATTTGTTACTGAA GCGTATAGAAGGAAGCTTGCTGAACGGGAGAGACAGATGGAGCTAGAAAGAATCCGTGAACTTCAAGAGGAGAGAGATGA TGTACGCTCATTCTGTTTTGATCCCTTATTCTTTTACCTTGTTTTCATATCTCTTCTATGTCTCAATTTCAAATTACTGA CATATTGTGTATTTTACTAATTTAATAGGTTACAAAGAAGAAAGACTTTTTGCTTGATTTTTATTCAAACCTTGATAGAA ATGTTGCTTATGGAGCAAAAGATGCTCAAGGGAGGAAACGTGACAACCAGGCTGAACATAGAGTTCCAGAGACACATGAG GGGGTGAACCCTGATGCATCAGACAGGCATCAGGAGCATGGTGATGCATCGGATGAAAGACAACATTCATTGGGTAACTC AAGTCCACCAGTGGAGTTTTCCAAGGAAAAAATTGGTGATCAGGGTGAACCTTCTAATCCTTCCAATAGAAGTATCAGCC CCACGGATATGAAGCCAAATCCTGAGGCTCTTGTAGAAGAAGAAAATAAGCCAGTTGAACAGCCATCAGCTTCTCAACCG AAGGCCGATCATCACAAAAGAAATCAAGATGCTGTGGCTGCAGCAAAGGAACGTTTTCTGGCACGTAAGAAGGCAAAGGA ACAGTGAACAATTTCCTGATACATATTTGGTCTTTAGTCTGCGTGTTTGATTTAATATCCATGGTGTGATGTTTCCTTAA ATGATACAGAGCTTTATCTGTGAACAGAGTCATAGAATGAATTGATACGCAGTAGTATACGATATTTTGCCAATTTTATG ATATCTAATTTTGGTGCCAATTTTCATGCTTCACTTCATTTGATCATGAACTTTTTCAAATGTACAATGTCATACTAAAC ATTGTATAACATTTTAATTTTGCATATTATTAAGGCTTATACAATGAAACTTTTTTTGAGTCATGCATGACCTAACAAAA GAAATGATTAGTTGACGGTTTAGATCGTACAGTCGCACAATACTTTCTTTTATTTACTAAATAATAATACCCTTTCAAAG AATATATCTTTTTATACAACTAGCTATCATTTAATTTCACAATAATTAACTAAATCAATTGAAGCAAGACATATTGACAA ACTCAGGAAACTGACTTTGACATGATAACTGTGGAAACACTCAACCTCAATAAAAATGACTAATGAGTAAGCTCCCTCAC ACACTCACACACATGAATGATTGTATCGGCATTAAAAGCTGAGGAAGAATATGCACCAGTACTCCCTAAGGATTCTACTG ACTATTCTGTTCCATAAGAAGCCAAGTCATTCTGAGCTATATTCATTTTTGGTCTTTCACAAGTCACAACAATCTCATCA TCATGCCTGAACTCTCTAAAGTGTGCCATTTTCCCCAATTCTTCAACTTCATCCATAACATGATCTAGAATTGCCACCAT CTCCAGAAGCAAAGAAGTGAAAGCAGCAAAGGGTAGTGCTTCTGAGAATTCGAGGCTAGTGATTGTAGTCTTACTCAGTT GTGGCCTTAAAACCTTCTTGTGTGCTTGTCCTGCTTTTGGTTGTTCTCCAGAGTGATCATTCTTAATACCCCATGATGAA ATTCTAGTATCTTCTTCAAACTTTTGCTCAAGATGTGCAATTGTTGGAGAGGACGTGTTGGTGGTTCTACCATTCCTAGA GCCTAGTAAAACTTGAGGTTGGGATTTCAGGGCATTGTCAAGGTCTCTTAAAGCTTCATTGACATTGCAAGAGAGTATTT GAGGGGAGAATTGATGTTTTTTCCTTATGCTGTTCGCCAGTTCTCTCAATACTTTTGACACTTCTCGTGCAAGTCTTATG CAAGAGTCTTTGTATAGGATCCGAATCGACCTTGGTGTCTGAAGAATCAAATATTGAATAATAACAAGTACATGTGGTAT CATCAAATTATGACAATAAGCATCAAATTATAAAGTATACTTTATGTTAGTTTTGATTCCAATAATTGTAATGGTGTCAG CCAAAAGAATGATGTTAATGCAGACCTTGAATATTATGTAGATCCTAGAGCATAATCAATGATTGATATTTCAAGTGGTT GTTATCCATGTGCTATCCATAACATGACAGATAATCCAGAGTTCAATTATGGGAGTTATAGAAGCAAGTGGAAGCAATTT TTGGGAGAAAGAGTTTGCATAATAACCTACATAAACTGGTAAATGTATTAACTTGAAAAAAAAAGGAAAAATCATAAAAT GTAAGACTTGAAGGTTAAATCATTAGAGCAGAAATACATTTAGTTCATTCTTTTACTATTTGCTTCATATAAAACTCTAG GTTATTATTTTTCTTTCCTGAACTAGTTGGTTTAGTACCTGAATTTCAGACTGAAGACATCCATGTAGTGCTACAACAGT GTAACCAAAATGTCGAAGAGAAGCTCCAACTCTTACATATTGCTGCAATGGGATTTTGTGGCAATATATTGAGTATCTTG GCTCCCAGCTTGCTTGTAATGCCTGTTTAATTCCACACAACAATTCTATATGAGATCTTCTTATCATAAAACACTCATGT CTGATGTTTTACTTTACAAGAAAGGGCCAGTAGTGACTGAATTTGGATTCTCTGCAGTTAGGAAATAAAAAATTCACACA ATCAAAGAATATGAGCCATTCAATGAAAATCATATGGCTCCGATTTCGAGTTTATTTGAGTTGTCCGATCTTAATGAAAC TTATAAGTTGTTCGATCTTGATCGGATGACTAAGATTTACTTGAATGTGTGAATTTAGAAATGTCCTGAGTACAGAGAAC CCAAATCCGTAGTGAGTTACCAGTGTTTCATCCTTAGCTTTGGAGTCTAAGACAGCCTTGTAACCAATGTAAGTGGGATC CTCGAATGAATCATCTTGAGTTGCTCGTTTTTCCGAATCATAAAAATATTCCTTGACAGAAACTGCATGAGATCAATGAC ATAGTATGAGGCAATGGAAATGAAGCAACTTTTTCACATTTAACAATTAGTAGCAATACTTCAAGCTTAAAGTTAACCTT ACCTTCTATGGAGTTGGCTAAGACTTCAAGCTTTGATATGGTGCAGTTATGGAGGTCTTCCCCTGACCAGTTTGGAAATA CCAATAGGCTCATCACAAGACACAGACCACAGCCTATGGCAATGGTAGAGATTCGATCTTTTGCAATGCTCCAAACATCA TCAACGCGGTAACTTGATACAGTTATCAAGTTAAAGGTCAAGAGAAATATAAGAACACCATAGTCATAATTCTTCTTGAT ATAGGGGATGAACCTGATATAAGTAGCTGCAGCTCCTGCCAACCAAAAATGAGGAAAACTTCATCCTATGTTCTTTACGT TCCAGGAAAATTAATTAAAATTACAAACATAAGCCTAAGATTAGCACATTAATGGACAATGCAGGGAAGTGTGGTTTATC TTCTGACCTGTGATTCTAAATATTTGTATTTTGTGTGAT
CDS sequence (LotjaGi5g1v0354100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAAGTATGGGTTGAACCTTCGGCCTGCCAAGCAGAAGCAGAAGCCACCAAGGCCTCCCCTCGCCACCCCTTTTGG CTTTAACGATGATGATGAGGATGACGTCGAGAGAGAAATCGCTCTCCAGGCTGCAAAGAAAAAATCTCTCAAGGAAGTTG AGGAGCAGCAAAAGAAGGCCTTGGAAGAAGATCCATCCGTATTTGATTATGATGGAGTCTATGAAAAAATGAAAGAGAAA GTTGCAAAACCACTGATACAAGATCGTGAAGAGAGAAAGCCAAAGTATATCCAAAATCTGATGAAAAAAGCCAAGGAGCG AGAGCAGTATCGCGAGATTGTGTACGAGAAAAAGGTTGCCAAGGAGAGAGACAAAGATGATCATCTCTATGCTGACAAAG ACAAATTTGTTACTGAAGCGTATAGAAGGAAGCTTGCTGAACGGGAGAGACAGATGGAGCTAGAAAGAATCCGTGAACTT CAAGAGGAGAGAGATGATGTTACAAAGAAGAAAGACTTTTTGCTTGATTTTTATTCAAACCTTGATAGAAATGTTGCTTA TGGAGCAAAAGATGCTCAAGGGAGGAAACGTGACAACCAGGCTGAACATAGAGTTCCAGAGACACATGAGGGGGTGAACC CTGATGCATCAGACAGGCATCAGGAGCATGGTGATGCATCGGATGAAAGACAACATTCATTGGGTAACTCAAGTCCACCA GTGGAGTTTTCCAAGGAAAAAATTGGTGATCAGGGTGAACCTTCTAATCCTTCCAATAGAAGTATCAGCCCCACGGATAT GAAGCCAAATCCTGAGGCTCTTGTAGAAGAAGAAAATAAGCCAGTTGAACAGCCATCAGCTTCTCAACCGAAGGCCGATC ATCACAAAAGAAATCAAGATGCTGTGGCTGCAGCAAAGGAACGTTTTCTGGCACGTAAGAAGGCAAAGGAACAGTGA
Protein sequence (LotjaGi5g1v0354100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKYGLNLRPAKQKQKPPRPPLATPFGFNDDDEDDVEREIALQAAKKKSLKEVEEQQKKALEEDPSVFDYDGVYEKMKEK VAKPLIQDREERKPKYIQNLMKKAKEREQYREIVYEKKVAKERDKDDHLYADKDKFVTEAYRRKLAERERQMELERIREL QEERDDVTKKKDFLLDFYSNLDRNVAYGAKDAQGRKRDNQAEHRVPETHEGVNPDASDRHQEHGDASDERQHSLGNSSPP VEFSKEKIGDQGEPSNPSNRSISPTDMKPNPEALVEEENKPVEQPSASQPKADHHKRNQDAVAAAKERFLARKKAKEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 318 | 318 | 9.6E-110 | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 1 | 318 | 318 | 9.6E-110 | – | |
| Coils | 43 | 64 | 22 | - | – | |
| Pfam | 54 | 170 | 117 | 2.6E-34 | ||
| Coils | 143 | 170 | 28 | - | – | |
| MobiDBLite | 188 | 318 | 131 | - | – | |
| MobiDBLite | 189 | 230 | 42 | - | – | |
| MobiDBLite | 251 | 266 | 16 | - | – | |
| MobiDBLite | 289 | 318 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0354100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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