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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0360000 |
Transcript ID | LotjaGi5g1v0360000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Fe/S biogenesis protein nfuA; TAIR: AT3G20970.1 NFU domain protein 4; Swiss-Prot: sp|Q9LIG6|NIFU4_ARATH NifU-like protein 4, mitochondrial; TrEMBL-Plants: tr|A0A0S3SLB4|A0A0S3SLB4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0360000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67454414..67458627) extracted from Lotus japonicus Gifu genome v1.2.
TGTGTATATATCATTGTTGCTTTTTTATCTCAAAAATAAAAACAAACCAAAAGAAAGTAGTTTTATAATTAGGACTTATG AACCCGTTTCAAGCTGTGGCTCTAAACTGGTTTGGAGAGAAGAAATTGGCATGTTGCTACGGAACAAAGTTTGTCACAAA TTCCTCGTCAGCCATTTGCGACGCACAGACATCTGTCACAAAAACCAATCCGGCAACTTTGCGACGGAAAATGTTCCACC ACAATGTCCTTGTCAGCCAATTTGCAACGGAAACAATTGATCCGTCACAAAGTCCTAGTAAGTGTGGCGACGGAATATTA GCGATGCATTTCTTCGTCGCAAATACCATATAAATCTGCGACGAAATTTCTCTCTATAAGATAAACAAAAAACACATCAT TCTTCCTCTTCTATATGTTCTCAATTCTCAATTGAAATTAAAACCAGAACCGAATCGGAAACAATGACCAGTGGTTGTGG TAGGGTTCTTCGGCGATTGGTAAGATTAGCACAATCGGAGACGAAGAGGAACAACAATTCTCTCGTCTTCATACCTCGCC GCCTCGCCGCCGCAACGCCGTCGTTCCTCGCTCCCAATGCCGCTGCTGCTTTCTCCTCTTCCTCCGCCTCCCCTCTTCCA TTTCTCCGATTCTCCACCGGACAAAGGAGAGCCATGTTCATCCAAACGCAGTCGACTCCAAACCCCTTGTCTCTCATGTT TCACCCTGGCAAGCCTGTTATGGAAGTTGGAAGCGCCGACTTCCCCAACCCTCGTTCCGCCATGAATTCTCCCCTCGCTA AATCACTCTTCGCCATCGACGGTTGCTACTCTCTGTCATTTCTCTTTCTCTTTACCTTCCTCTATTCTTTCATATAATAA TAATTGTTTAATTCTCTTTCTCTGTTGCAGGGATTACTCGTATCTTCTTTGGATCGGATTTCGTCACGGTTACCAAATCC GAAGATGCTTCCTGGGAATTCCTTAAGCCTGAAATCTTCGCCGCTATCATGGACTTCTACTCTTCCGGCCAGCCCCTCTT TTTGGACTCTCAGACTTCTGCTGCCATGGATACTGCTATCAAAGATGTATGTATGGTAGATAGATTTACAGTAATCATTA TCTTCCTTATGGTAATCATTTCAGTATTGGTTATTGCAAACACAATGATGTGTAACATAGAGTTAGCCAGCAATACCAGA TTGTGTAGGACTTTCCTATCATATGATAACATTTAGAATTCCATTTCATGTATTCAAAGACATGGATATTCAAAATTCTA TTGTGCTTAGAATTTCCAATGAAGTAATCACATCAGATGGCTCATGCTCTGCAGCCATCAACCTAAAGATGATTAGACTC ACAGCGCACAATCTCACACCCAGTTTAATAGAGTTGATATCCCTTAGTCCATGCTCCATACTATCACACAGTTCCACTTC CATTTAAGAGGCTTACTTGGTCTCGAAAGTCAGACATCGAACACCCAATGGAATAGCCCAACTGGGTCCAAAACTGAAAA ACAGATGCATAATTTTTTACAATTTTTAATATAGAATAGCTTTGTTTCAATCTCACAAATTGATTTTTATACCATACTGC TGGTTCTGTCGTTCTGGTATGCCATAAGCTTAGTTATTTACATTCATGCATTCAGCACTGCAAGAGACTCGTGTTTCATG CTCGTCACTACTCCTGTAATTTTTTATTTTATTCCAATTTATGTTTCTCTTGGTCGGGATCCATCCATACAACACTGTCA TCCTTTATGTAACCAAGATGGGAATAGTTTCTCAAATATAGAATTGGTGTGAACATACCAGAGCACATCAATTCAAACAA CACGGTTGGCAATCTCTTCTCTTGTGTCTCTCAATTCCCTTCTCCTAGTTTTCTCCTTAACCTTTTTTAGACTTTGTTAA AGTCTCACATTGACTAGAGATTTGGTCAAAGAAGTCTTTATAAAAGGTAGGACAATCCTTACCTTTAAGCTAACTTTTGG GTTAGAGTTAGGCTTAGCCCAAATTCTCTAGAGTCTATCCTTAGATCTATTTTGTTATTGGACTACCCATGATGGGCCAC CAATAGAAGTTCAAAGTTCAATAATCAACTTGGCCCATGGTTTTTCCAAGAAAAATTAATGAAATCAATCTTGTACATGA TTATTCTAGGAGAAATTGATGAAGTTAATTTGACCTACAGTGTCCACACTTCAGATGTCTAGCCTTGGATGTGAGGCGGG TATGTTTAGGTCTTACATTGACCGGAGATGTGATAAAAAAAATCATATAGAAAGTAGGGCAATTCATACATCTAATCTAG CTTTTGGGGTCTTGACATAGACTAAATTCTCAAGAGATTTGTTAATGATCCAAGTACCCAGAGTGTGAGACTTGTCTTAC TTATGGTGTACATGAGCGTATCTCCTCCACTACTTTTGAGAGGTCGAAACTAATTCTGAAGTATTTATGTTTCCATATAG GATGATTCTGAAATAGTTGCGATGATCAAGGAGTTGCTGGAAACCCGTATTCGACCAGCTGTGCAAGATGATGGTGGGGA CATTGTATATAGAGGCTTTGACCCGTGAGTTCTTCTTTTATTTTGGTTTTAAATCACTTTCATCAAAGCTTAATGAAAAA TATTTATGCATTATAGAATGACTCTGTTTACCGAGTTGTTTTTATTGTGGTTTTCTCTAGAGATACCGGAATAGTGAAAC TTCAAATGCAAGGAGCATGTAGTGGCTGCCCGAGTTCATCAGTTACTCTAAAATCCGGCATCGAAAATATGCTGATGCAT TATGTACCTGAGGTAACAAGTTTGGCATATCTTTTTGGGATTTGACTAATGTGTTTCTTGTTTCCATGTAGATATTTATT GTTACAGAATTAAAATCTTAGGCATTATCTTCCTTCAGCACTAAAGCAGTCCGCCTTTCCTATTCTTATTCCTGAGTTAA TTTTGAGTGCATAATACTAGCTGGGGACCAATTAACTTTTAACATTTGCTAATTGTACACCTTTGGATTAAATTTCCTAT TTGTTCTACATTAATACATATACCTATTTATCATGGTATGCAGTATCTTTTAACATGTATTCTCTAGGATATTGAATATT GTATTGATGAGTAGTGCTAGCAACACTCTCTTTGACACTTTTTTCTAACACCCTCCCTTTGATTGGTTGAAAGTAAGGGG ATTCCATTGGAGCAAATGAAACTAAAATGACTAATCAAAATGATTGGTCAAAATCCATGTGGGGTCCACTAAGGGGATTT GATTGGAGCAAATGAACCTAAAATGACTAAAATCACGCATTTGTGGTACTATTTAGTATTTACGCAGTTGCAAAACAATA GGAACCAAAAGTGCCACTAAGTCTTTTGATTATATCTTGATGATAACATTTTCTAAATGCTGCTTGTTGCTTTTACAGGT CAAAGGTGTGGAACAAGAATTGGATCCTGAGGGTGAGGAAGCAGCATTAAGTGGACAAATGGAGTAGTTAATCAGTCTAA CAACAGTACATGATGGAAACAAAAGGTGTGAGTGTATATGCAAACAAATATATGAAATAAGTTGTCAGTTTGATACATTG TAGTATGGCATGAAATTTTGGTCTAGTTAGATCTCACTGACATGGTATGAAGTAGTTTGTTACTCAAGGACGGCACGCTG TACTCTCAATTTGTCCTACTTAGCTATGGTTCTAGGTGCTCCGAAAAAGTACAAGCATTGTTTGCCAATTGTTTGTCTTC AGCGTTCAGACACACATGTACTGATTATCCATCACTCGGTAACTAGTGATTCTCTCCTTTTTAGTGTTCAATGGAGACCA GCAAAAAGGCATTGATCATTGTTGTTTTATTGCCAACTATTTGTATTCTAGGGTTGGTCCCCATGTACTCTATTGCTAGC TGCATACAATTTCTTTATTAATTTCATAACAGCCAACAGGGGCCAGTCATGTAATAAGGTGTCCCTGACTCTGGTTTTTG CATGAAATCTTGACTAATTGCATCCATATTTTCTGTACCTCTTTTACATGGCATATTTAGGTATTTAATGTTATTTTACT GGAGAATTTTTTTGCGTTGAATCAGTTATTTATATGAACTTTTATTTCCATTATTCTTTATCAGGCTCAACAATTTTCCG TTTTCAACATGTAGATCATTAATTGGGTGGAATTAGTGTAGGATCCACTAAAAA
CDS sequence (LotjaGi5g1v0360000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAGTGGTTGTGGTAGGGTTCTTCGGCGATTGGTAAGATTAGCACAATCGGAGACGAAGAGGAACAACAATTCTCT CGTCTTCATACCTCGCCGCCTCGCCGCCGCAACGCCGTCGTTCCTCGCTCCCAATGCCGCTGCTGCTTTCTCCTCTTCCT CCGCCTCCCCTCTTCCATTTCTCCGATTCTCCACCGGACAAAGGAGAGCCATGTTCATCCAAACGCAGTCGACTCCAAAC CCCTTGTCTCTCATGTTTCACCCTGGCAAGCCTGTTATGGAAGTTGGAAGCGCCGACTTCCCCAACCCTCGTTCCGCCAT GAATTCTCCCCTCGCTAAATCACTCTTCGCCATCGACGGGATTACTCGTATCTTCTTTGGATCGGATTTCGTCACGGTTA CCAAATCCGAAGATGCTTCCTGGGAATTCCTTAAGCCTGAAATCTTCGCCGCTATCATGGACTTCTACTCTTCCGGCCAG CCCCTCTTTTTGGACTCTCAGACTTCTGCTGCCATGGATACTGCTATCAAAGATGATGATTCTGAAATAGTTGCGATGAT CAAGGAGTTGCTGGAAACCCGTATTCGACCAGCTGTGCAAGATGATGGTGGGGACATTGTATATAGAGGCTTTGACCCAG ATACCGGAATAGTGAAACTTCAAATGCAAGGAGCATGTAGTGGCTGCCCGAGTTCATCAGTTACTCTAAAATCCGGCATC GAAAATATGCTGATGCATTATGTACCTGAGGTCAAAGGTGTGGAACAAGAATTGGATCCTGAGGGTGAGGAAGCAGCATT AAGTGGACAAATGGAGTAG
Protein sequence (LotjaGi5g1v0360000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSGCGRVLRRLVRLAQSETKRNNNSLVFIPRRLAAATPSFLAPNAAAAFSSSSASPLPFLRFSTGQRRAMFIQTQSTPN PLSLMFHPGKPVMEVGSADFPNPRSAMNSPLAKSLFAIDGITRIFFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGQ PLFLDSQTSAAMDTAIKDDDSEIVAMIKELLETRIRPAVQDDGGDIVYRGFDPDTGIVKLQMQGACSGCPSSSVTLKSGI ENMLMHYVPEVKGVEQELDPEGEEAALSGQME
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 272 | 269 | 1.0E-123 | – | |
PANTHER | 4 | 272 | 269 | 1.0E-123 | – | |
PIRSF | 9 | 59 | 51 | 36.0 | ||
PIRSF | 43 | 272 | 230 | 8.8E-95 | ||
Gene3D | 61 | 166 | 106 | 2.1E-38 | ||
SUPERFAMILY | 71 | 161 | 91 | 3.79E-30 | ||
SMART | 73 | 159 | 87 | 1.4E-46 | ||
Pfam | 73 | 159 | 87 | 8.8E-31 | ||
SUPERFAMILY | 173 | 259 | 87 | 1.31E-27 | ||
Gene3D | 181 | 256 | 76 | 1.0E-31 | ||
Pfam | 187 | 255 | 69 | 2.8E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
Biological process | Iron-sulfur cluster assembly | The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. | ||
Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. |
Expression pattern of LotjaGi5g1v0360000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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