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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0363000 |
| Transcript ID | LotjaGi5g1v0363000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gem-associated protein 2; TAIR: AT1G54380.1 spliceosome protein-like protein; Swiss-Prot: sp|O42260|GEMI2_XENLA Gem-associated protein 2; TrEMBL-Plants: tr|K7LM67|K7LM67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0363000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67717635..67721492) extracted from Lotus japonicus Gifu genome v1.2.
GTATAAATAAGTTAGAATGAACCCCACGCCCTCACAATTGGAAGTCTCAACCGAGAGTGAGAGTGAGAGTGTGAGTGTGA GTGTGACTGCGACTGCTACTTGTGTTCATCAAGATTTCCTCAATTGTGCGGTGCGGTGATGGCTCACGTTTCCGATTCCG ATGCTTCAGTTCTCGCCGGCGACTGCTTCACCAACTCACAAGAACACCTCGTTCTTGCTGCTGCTGCTGCGGAGGAGGAA CTGCTCCAAGTTAAGAAGAAACAACTCCTCGACGAACTCGAATCTGCTCTCGTCACACCCAAAGACACCGTCAAATTGCC ACTGCCACCGATTGCTATGCCCAATCCCGTTCCCGTTCGACCTTCCTTGGGCTTAGGGATTGAGGTTATCGACGAAACGG CATTGCTGGAGACCATTCCCAGGAAAATCACGACGGCGGCTTCAAAGAACGCAAGAAGAAGGGCCCCCGGTAAAGGAGGA GAAGGAGGACCCGTCAAGAAGCAGATCCGTCATCACAAGAAGACCGTCACGGCGGAGGAGATACCGGTTCTGAGGAATAG CGAGGCCAAGGGTGGCAAGTACTCGCGGAAGGACATGATGGCGCTGAGGTTCGTCAATGTTGCGGGGCAGCGAAGGTTCT GGAAGACCATTTACGCCAACCTTGAAAGCGGCGTGGCTCAGGAGTATGATACCTTGGCGGTTAACGTTCACCATCTTCCA TGCCTTCCTAACAAGAAGCCAATCCTCGGTAAGGATTTTCTTATGAGAACACCTGCTTTTCTAATTCGCTGTTTTTCTTT CTTGCTTTTTGATTTCTGGGTGCTGCAATATTTGTGTATCAAGTTATCTTTTGATTAGTCTAAGGCGTTTTTCTCAGCAA ATGTATTGAGTATTTTTTTTTCTGGTGAAATTGTACAAGACTTGATTGCTTGAGATTTTCTGTTTATCCAACTGTCTCCT GGTTGCTAGCTCATATTGTGTCAATTTGTTTTCAATTTCTGTGGTGGACAGGTGTTGGTGCTGCTAATGGAAGATGGAGA TATGTCAAAGTTTTTGTCTGAAGAATGAGCCCAAGGATAATCTGCAACATTAGTTCACTAAATTCTAACTTTTCTACTTA GGGCACTGTCTTCTGTGTACTGTTACTTGTATAGAGTCAGTGTATATCAAAAGTCTTGTACATTAGACTAGATTGTAAAT CTGAAAGATTACTCTGGTCATTCAGTAGCGACTAGAGAGGATGCTTTGTTGTTTGTCAATTGTTGATTTTTTCAATAAAA AGTTCAATTTTTTTGTTTGTCTAAATTGTGCTTGAATGAGTGGATGTTTTAACTGGTTATTGTTGCTTTTCCAGATACTT AATTATATATTTATTCCTTATCCAACCCTTCTTATATCATTCGCAAATTGACAATGTTTGGTGCTGAAAGTCTTCTAATT GCTTTCAGGAGCAGAGTCATGTGAAAACGTGAGTCCTGTTGACCCTTCTTGTAGTCATATGGATGAGGATGGGCACTCAG TCTTAGAAGAGCGCAATGAAGATGATGATAGTGAAGATGAATATACTAGCATCCAGAGGCCTGCCTTTTATGTCGATGGA GAACCTAATTTCGAATCTGGTCCACCAGAAGATGGATGGGAATATCTTAGGCGTGTCAGGTATTATTGTAACTGTTAGCT GCTGATTTATGGTCCTGTGAAGGATTTTTGAAATTTTGTTTCTTCCTATTGATTTCTTTTTGTTGTTTTGATCTCTATAA AGTAAATGATTCTCAATATTATTGGGGATCAGTCCATCTCCTTATTCAATCTCTTGACAAAATGCATCACAACTGATCCT AACAGCCAATCCCTAAACTTGTGATTCACTTACAGTATAGTAGAAGTTGTAGTAAGTCTTGGGATGCAAAATGGAGCCCA GTATTGCAACTGTAATGGACACATTTAGTTAAACTCTGAATTTCTTAACAGATAGAGTGGGGGAAGCCGGCAATAGACAT TACATTCAGCCATATGCTATGTAATTTTTAAGTTGAGAGCGTATTATTTTTTCGTACAAATTTTATTATTAGTACAGTTG GAGTTCCACTTACAAGTGTCAATGAGTATTTGAATAAGTTCCTTCAGTCAAAGTTCTAAATATGTCTATAGCAGTAAGCT TCATGGAATAAATTTGAGGCGTCTAGAAAGGATGGAATTTAGACTGCAATGGTTTCTTAGCCTATGTTGGAGAAGATAGA TGTTAGAACAGCCCTAGGTTTTGGGTCTGTTAAATGTTGGTTTGGTCAGCAGGTGAAACTTACTGTAAGATAAATTCTCA AACTTTTTTTATGCTGCTTAGGTGGGAAGCAGGTCAAATTCCAAAAGTGAAGGTAGCAAAACTGGACAGATGTAAACTTA ACAAGGAACAAAGTGCTTACATGCCCAAGATTCCCGATGTTGCCAAGTGTCCTGAGCATCTGTTGCCATCGAAACAGTGG GAGGATGTATTTCTTGCTGAGTTTTCATCACTGAGAGCGGTATGTTCTTCAAGAACCTCTTTCTATATCTCATCGTTTTT CATTTGCCTGCTTCTTTTTTCATTTTAAATTGTTAAAGTCATCAAGTTTAAGATAAAATAAGAAGAGAATACTTTGGATT ATGATTATGGTTTAATTAAGATAAGGTGGTATTAAATAGGTTCCTAATTCTAATCCAATAAGGAAATGAATCGTGAAATA TGTAAAAATATAAAAACTTAAGACAATGTAAGATACTTCCGGATAAGATCAATATGTTATGAGATATTTTTTTTATATAA TCTAGCATGAGTGACCAGACCAGTACTAAGAATTTTGCTATTCCTTCACCTCATAATGGGTATGCACACCACTTCCTCAG GTACACTACTCATGCATGACTACATCTTGGACCCTTATGGTGTTCTTAACTGTAATTGGCATACGTAGTGAAATCATTTA ACTTTGTTCATATTGTTAAATAAACAAATAAGATACTAATTAATTTCCTTGCTAACAAACGTTTGGTTTTTGGGATCCTA CTGGATTTTGTTTTAGTTCTGATTCATTAAAGGACTTCACTGACCCTGGTTTATTATTCCAGAATCTCTCATGTCTTGAA GGTTCAAGTGTCATGGATTCCAGTAGTCTACAACCTGTTCATTCCTCCCAATTAGTTGGGAACAATTGTGGAGAATCTGC AAGTGTTATGAACCGAGATGTCCTACATAGCATTGATAAGGCAATGGATCAACTTACAATTAACTTGACAGGTGAAGTTA AAGATACAACACAGCCACTGAAGACAGGATCAAAAACTTCCATTGATCAAACTACTCCTCCTTTGCTTTCTGTAGTCTTA GGAATGGACTCTGTAGCCCGCGTATCGATGTTGCTGAAACGAATTAGCTTGCTCGAATCTGCAAACACTATCACAAGAAA TGATTGCATGTGGCTTTTTGCTCTCTGTGCAACAGTTGATGCTCCACTACATGCTGACACTAGTGCCGCCCTCAGGAGTC TGCTGCGGAAGTGTGCTAGCATTCGTGCTGGAAAGGCTGGACTAGACGAGGAGGCTGTGATGTTGAATATACTAGCTACT ATTTCAGGGAGATATTTTGGACAATCTGAAACCTGAATTCCCAGTTTGTAACTTTATTACGACGCCTTATGTTTTTCGGA TTATGTATGAAGAATTTATTTATCCTAGCTTTCTTCTTTTTTCTATGTCCTTATGGATTCCTAAAGTACTTTATACTGCC AACTTTTATAGCTCTTGAATGTTTTAAAAATGAAATTAATTAAATTCTTCTATATATTTTTATAATCTACTTGAATGTTT ATACAATCTCATTTTTTC
CDS sequence (LotjaGi5g1v0363000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCACGTTTCCGATTCCGATGCTTCAGTTCTCGCCGGCGACTGCTTCACCAACTCACAAGAACACCTCGTTCTTGC TGCTGCTGCTGCGGAGGAGGAACTGCTCCAAGTTAAGAAGAAACAACTCCTCGACGAACTCGAATCTGCTCTCGTCACAC CCAAAGACACCGTCAAATTGCCACTGCCACCGATTGCTATGCCCAATCCCGTTCCCGTTCGACCTTCCTTGGGCTTAGGG ATTGAGGTTATCGACGAAACGGCATTGCTGGAGACCATTCCCAGGAAAATCACGACGGCGGCTTCAAAGAACGCAAGAAG AAGGGCCCCCGGTAAAGGAGGAGAAGGAGGACCCGTCAAGAAGCAGATCCGTCATCACAAGAAGACCGTCACGGCGGAGG AGATACCGGTTCTGAGGAATAGCGAGGCCAAGGGTGGCAAGTACTCGCGGAAGGACATGATGGCGCTGAGGTTCGTCAAT GTTGCGGGGCAGCGAAGGTTCTGGAAGACCATTTACGCCAACCTTGAAAGCGGCGTGGCTCAGGAGTATGATACCTTGGC GGTTAACGTTCACCATCTTCCATGCCTTCCTAACAAGAAGCCAATCCTCGGAGCAGAGTCATGTGAAAACGTGAGTCCTG TTGACCCTTCTTGTAGTCATATGGATGAGGATGGGCACTCAGTCTTAGAAGAGCGCAATGAAGATGATGATAGTGAAGAT GAATATACTAGCATCCAGAGGCCTGCCTTTTATGTCGATGGAGAACCTAATTTCGAATCTGGTCCACCAGAAGATGGATG GGAATATCTTAGGCGTGTCAGGTGGGAAGCAGGTCAAATTCCAAAAGTGAAGGTAGCAAAACTGGACAGATGTAAACTTA ACAAGGAACAAAGTGCTTACATGCCCAAGATTCCCGATGTTGCCAAGTGTCCTGAGCATCTGTTGCCATCGAAACAGTGG GAGGATGTATTTCTTGCTGAGTTTTCATCACTGAGAGCGAATCTCTCATGTCTTGAAGGTTCAAGTGTCATGGATTCCAG TAGTCTACAACCTGTTCATTCCTCCCAATTAGTTGGGAACAATTGTGGAGAATCTGCAAGTGTTATGAACCGAGATGTCC TACATAGCATTGATAAGGCAATGGATCAACTTACAATTAACTTGACAGGTGAAGTTAAAGATACAACACAGCCACTGAAG ACAGGATCAAAAACTTCCATTGATCAAACTACTCCTCCTTTGCTTTCTGTAGTCTTAGGAATGGACTCTGTAGCCCGCGT ATCGATGTTGCTGAAACGAATTAGCTTGCTCGAATCTGCAAACACTATCACAAGAAATGATTGCATGTGGCTTTTTGCTC TCTGTGCAACAGTTGATGCTCCACTACATGCTGACACTAGTGCCGCCCTCAGGAGTCTGCTGCGGAAGTGTGCTAGCATT CGTGCTGGAAAGGCTGGACTAGACGAGGAGGCTGTGATGTTGAATATACTAGCTACTATTTCAGGGAGATATTTTGGACA ATCTGAAACCTGA
Protein sequence (LotjaGi5g1v0363000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHVSDSDASVLAGDCFTNSQEHLVLAAAAAEEELLQVKKKQLLDELESALVTPKDTVKLPLPPIAMPNPVPVRPSLGLG IEVIDETALLETIPRKITTAASKNARRRAPGKGGEGGPVKKQIRHHKKTVTAEEIPVLRNSEAKGGKYSRKDMMALRFVN VAGQRRFWKTIYANLESGVAQEYDTLAVNVHHLPCLPNKKPILGAESCENVSPVDPSCSHMDEDGHSVLEERNEDDDSED EYTSIQRPAFYVDGEPNFESGPPEDGWEYLRRVRWEAGQIPKVKVAKLDRCKLNKEQSAYMPKIPDVAKCPEHLLPSKQW EDVFLAEFSSLRANLSCLEGSSVMDSSSLQPVHSSQLVGNNCGESASVMNRDVLHSIDKAMDQLTINLTGEVKDTTQPLK TGSKTSIDQTTPPLLSVVLGMDSVARVSMLLKRISLLESANTITRNDCMWLFALCATVDAPLHADTSAALRSLLRKCASI RAGKAGLDEEAVMLNILATISGRYFGQSET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 26 | 46 | 21 | - | – | |
| MobiDBLite | 100 | 127 | 28 | - | – | |
| PANTHER | 147 | 509 | 363 | 4.5E-106 | – | |
| Pfam | 252 | 508 | 257 | 3.1E-68 | ||
| Gene3D | 314 | 510 | 197 | 4.0E-35 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0363000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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