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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0365000 |
| Transcript ID | LotjaGi5g1v0365000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dead box ATP-dependent RNA helicase, putative; TAIR: AT2G43110.1 U3 containing 90S pre-ribosomal complex subunit; Swiss-Prot: sp|Q68EV5|CMS1_XENLA Protein CMSS1; TrEMBL-Plants: tr|I3SH90|I3SH90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0365000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67966646..67974504) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGGAAGAGAAAAAGTGGTGTTGAGAGGGGGTAAATTGTTGAGACCATTGTACATGGTCTAAGGTGGACAAGTTTCAA ACTGGTCCACCGGTGGACCATTATCATATGTCGTTAGATCTGAGAATCTTGAAATATTCTTTTATTGGATGGTTAGGATT TAATGGATGATAAAAGGGCAATAGGGTAAATTGACCCATCTTCTTCCCCCTTTCTCATTGGTCTGCTCTCCGCCACAACC ACCACCTTCCGCCGGAGCCTCAGCCCATACTCCACCTCCTCCCCCGCGAACCCGACCCCGATGTGGCTGCCTCCGCCTCC GGTCGCCTCCGATGGCTTCACAGTTGCAGATCAGAAAACAACAGTAACACAAACACTAACAACGACGGATCTGCGATGGG GCTTCAATAGTTAGCAGCAATTTTGGCTGGGTTTCTCAACGGAGTGGTGTTCTGGTTCAATTTGGGTTTGTGGTCAAGAA GCTTCGTTCGTGGTAGCGTGGTGGGTTCCAGAGGTGGAACGAGGTTCATGTTTGCTTCAGGGCAGTTTGGGATTGCAATG GGGCTATTAGGGATTTGTGGGTTTTTGGTTTTCTTGTTGTTGTTTTTTTGAGAAGTTGAAGTTATTGTCCAGATTCAGAA GTTCCAGGTTCTCTAGCTTGAATATAGAGTCTGGGATTTCACCTCTAAGATTATTCCCTTGAAGGTCCAAGTAAGCTAAA TTGGTAAGGTTCCAAGATGGAAATTGAGTTTCATTTGCTACCCAGATATTAATTTTTCTTGTAATTCTCAGAATTGGACT AAAGTTTGTTTCTTTATGTTGAATTGATTTGTTTTCCTCATTTTCTTACTCACCCTGTTGAAAAGTGCCAAACTTGAAAA AAGGTTTTGGTTCACTGAGTGCTAGTATTACTAGTTTAGATGCTAATTTTTAGGTTTGGAACAGTTTAATTTGTCAATAT TATTTGCATATTCTTGTGTGTTTATGATTGAAAATTCCTTTAGTTCTGAATTTCTTAGAGTTGATGCTGTTTGTAGAATA TAGAGAATGCAAGAAGCTAAGAATAAATTATGAGTCTGTCACACAAAGATATAGGTAACTATGGGGATGGTAGCAGCAAC AATGAATCTCGTGTAGCTGGAGAAGGGACAAGTGATCTTGATCATGAAATTGCACAATTGACAAAATTTGGGTCAAGTCC TCATGAGCATTTGGGTCGTGTTGGTACTGGTAGGATGAAGCTACCTGCTGAATTTCTTAACCCTCTCTCCAGTTGTGTGA GCTTTGTCAAAGATGCATAGATGTCTTCTCTAAAATTGTTGTATTTAAGGTATGTGTGAGATTTTCAAGTGAAGAAGGAA TAGACCCAGAAAAATTGCAACTTGAAACTGATAGCCATTTTGGTTATCAGGGTCTATGGTTCAGGTTGAGATGGAGTTGT GGGTTGGAGTTGGGGGAAACAAAGGTGTTGAGGTGGGGAGGGGTTTGAGGTGGTGGCCTATGGTTAGGGAAACTGAAAGA GTTAAGATTGAGAAGAGAGGGTTTTTTTTTTATAATTTATTCTTTTTATATATTTTTATTTGTAAATTACTATTATGACC CTTGGTCAACCGGTGGACCAGTTTGAAACTTATCAACCCTAGTGGGCACCATTATTTTATTAATTATTGAGAAAAAGTAA TTAAAAAATGAAGAAGTAGCCTATTATATTATATTTGTTGTTAATGGGCTTGGTTGAAGGCCCAACCCGTTGGTTTGAAG GCGCGCAGGGCTGACTAGTGACTAGGGTGCGTGGGTGCCGTGTGTGTTTACACTTTACATTACAGTGCAGCGGCGCCGGC GAGGTGAGTGAAGAAGAAGAAAGAGAGAATGGCGAGTGAGAAGAGAAAGCGAAATAACAACAACAATGATGATAGAGGAA TGAAAACGAAAAAGAAGGAAAAGGAAAAGGTGGCAAATGAAGGAGAAGGAGGTTCTATTTCTTCTTCGTCGGAGGAGCAA TTGCGTTTTTTGGTGGATCAATTTCAGGCCGCCAAGGGTGTTCAACTTTCTTCTCTGGAGTTGGAATCCCTCACCGCAGA TAGATGCATTTTGGAACGACAACATCATTCTGATGATGTTACACAATTGGCCAATACTATCAAAGCAGCTTTTGGGGCTT CATGGAAACACCTGCTCTGTGATTCTGTTTCTCATGCTAACATCCCTGCTGGTAGCCCCGCCCTTCTTATCCTCACTTCC TCTGCCTTAAGATCCATACACCTTTTAAGGTACTTTCCTTTCCTTTTATTCTAATTCTAATAATTTCTAAATGTAATCAA TTCATTCCATTCATTCTTGTGCTGTGTTATGTGTTATGCAGGGGCTTTCGTTCTATGACAAAAGAATGTCAACCTGTCAA GTTATTCTCAAAGCATATCAAAGTTGAACAACAGGTTTTTTTTTTTTTTTTTTTTTTAATTTTAATGTATGTATGTATGT ATTACTATTAGCTTAAATCTGGTTAGTAATTGGACTAAGTGACATTGTTATCTACATGACATATTGTTGAATTAATTTTC TAATTTTATGAGCAAGATAACATGATTAAAGGCTGAACTCTACTGCTACATTTCTTCAGAATCTCATTCCATAAAACTTA TTTAACTCTGGTATCATTAGTTGGGTTAGGTGCCTTGTGCTCTAGTCTAGTAGTCAACAAATGCTCTAAATATCACTTTC CTTGAAGCTTCAGTTTAACATCCCAACTTTGATGAACAAGCAAATTTGTTTTTTTATGTGCTGCTTATGGAATCCTTGTG GGTGCCATTGCTGTCTTTCAGATCATTTAGGAATCTTGTTTCTAGTTGTAATAAAGTTCCAATCCCACTTCTCCTTGGAA ACTAAGAAAGAAAAATAATTTTGAGTTTTCTTCTGCATATGGAAATCATAAATGTATTGTTCTGACAAGGGCGTGACTTC TCTTTTTTTTTCCATTTTTTTACATGATGTAAGAGTTTGTGATCATTCATGAAAACATTGTCAATTGACATTGCTTTATG GTCAACGCAGATTGCTTTGTTAAAAAACCGTGTTAACATTGCTAGCGGCACACCAAGCAGGTTGGTCATCTCAATTCTTT CATTGAAGAAAAATATGTTGTTTTCTCTTCAACCATCATAGAATAAAATCATTCTTTTCATTTCTTCGATTACTAAATCA TTTACATTGTTAAATCTCTGTCATGTAAAACGTTCTTATAATTATACAGTATTACTCCTGATCAATTTCAGGATAAAGAA GCTTATTGACATTGAGGCGTTAGGCCTTTCAAGGTTACAAGTACTTGTGCTTGACATGCATCCGGATGTAAAGGGCTATT CTTTATTCTCCCTTCCACAAGTCAGGTTTGATTATCTATCTTCGCCCCTGTCTATCATATATAATTCTTAAACAACATTA CCCATCATCTCTCTTATAACTTGAGTACTTGACAGAAATTAAGAAGCTCATGGATTATATTGAAATCCCCATTTACATGA AGCTTAACCTGATTGATTGACATGATATGCAGAGATGAATTCTGGGACCTGTTCAAGAATTATTTTTATGAACCAATGAT CAAGGGTAATCTGCGCATTTGTCTCTATGGTCCATACCAGCTGGCTGCTCGTTCAAAAGGCAAAAAAGGACTTCCTGTTC CTGATAAGTAATGTACAACAGTTAACCACACCTGCAGTGCCTTGTTTTAGGCGTGTATTCTTGCAATTAGTTTATTATTG CGATTGCCATACTAGTTATCTTTAAATGACGTCGGTTTTGTATACTTGAAGTGTTTGTAGCTCAAAGTATTTGGAATATT TCAAATTTTGAATTCGAGGATTCAAAATTCAAGTTAATTCATCCTTCACTATTCTATAACTTTGTTCATTTCTTACTAAC TTTATCTTCTATGATAAAATGATGACATCATTTTCTGGATCGAGACCCTCGGCCACAAATGGTGTTTCATTTCCTCTCCC AACCAATGAATTGTGACTTGTCAATTAATATATTTTACATTAAAAACGTTATATAGGTACTTTAAATGCACTCAAAAGTC GAAATGCGTTTAAAATGCTTTGGAAATAATTTTTAAGGCACATGTTTAGTTTATTGTCGTTGGCGTAACATTGTACCTAG GATCTTAGAAAAAAAAAACACTGTACGTAGAAGTTTTTGGGTAATTTGAAGTTTTTCAATCAGATATTTAACAGTATAAA TGAAGTAAAAAAAAAGAGTAAAGTATATTGACCATCCTAATGAACGAGCACATTTGGAAAATTTTATTTGGACTTATTTT ATAATATTCAATTAGTATAGGTTCAGTCTAATTTATGTAAATTAACTCATGATCTATCTACGAGCACTTTTCTGGAGTTG CACCAAAATCATTGGTGAGCTTTCTGCCTCATCCACTTTGTAGCTGACCACTTCTCCCCAGCAAGTACCTCACATCCTCC ATGCACACTAAGGGGATCTGACTGTCCATCCAGCCCCTGAGAACACCAACCAGACATGAAAAAGTTAATCATTTGGCGAC ATGTAAAGGTAGCGTTTGAAAAATGCATAGCACAAACAATTATAGCTTTCCATGATTTAATACTCCAACATTATACTATC CACAATCTGTGTACTTTTTTTTTTTAATATATCACTATTTCTTCATCAATCTATTGGAAAACGATACGCAACCCGTGTAC TTGCATTTAGCCCAACAAATACATATTCTATATTGGGCTTAAAGGTACAATCTTAAAAGCATAAAAAAGTACTAGAACAA TTCAGAAAGTTGCTGCTACTATTTCAAAATTTCAACGAATGATGTACTTAAAAAGCAAAATTATACTAACCATACTCCAG AAAAGCACTGCATTTCCTTTAGTTGGTTTCACAGATAGCCCTTCGACAGTTTTCCCACCACAGCTACATTGACCTGAACC AATCTGAAAGGCATTGCACATTATCAGTAGCAGCCTTCAGTACAGTCAAAAAGTCCAACTAGATGGTTAGATAATACTAG CACATATGCCACATCATAGATAGCGAATACCAGACTAATACAAATTGAGCGCTGGTAAATCCTAATAGAGCCTATAAATA TCTTAATTCAGAAAGACAGATCCTAAGAGTAACATATGTACATGACTAGTATGAGCAGCGAACATAATCAAAATTTAACT AAATATTAACATCAATAAGAGAGATGCTGAATACAAATTTGAATGAAGATAGGGGACATACAACTCAATTTTGATAGTTA AATGAACTATGTAAAATGAAAAACAAAATAGACATATCTTTTGTTAGACAACAAAATAATACAATTCTCTTGTTAAAGTT AGAACCCCGGGTTATGATCCACACAAAATTTGGGCATCATCCTGCTACTTAATATTTGCTTCAGATTTAGGCTACTCATA TGTTTCAGAACTATATCTACAGCAACTACCAAAAAATGCTAAATGAAATATTTCAGAAGTCAAGAGAGTTTACATTTGGG AAATATGTTTCTCCTCCCTCAACATTGTCACTTAAATACATAAGCATTGTAGCTATTCGCTGCCCACCACGCTTCAAGTT GAACTGTCTCGAAAAAGAAAGGCACAGAGGGTCGCAGATAGTTACATGGAAGACACTAAGGCAATTCTCAAGCTTACTAT ATAAAGAAATAGCAAAGAGAGGAATACAACTTACAGTATCAGCAAAATAGTCATGATGAGGTTTGTAGTACTGATTCTTC TCATACCTGTACTGCTGCAGATGTTAACCTTGGTGCTAGCAAAACTCATCTTGTTAACATAAAGGAATAAGTCATATCCT CACCTAAGGACTTGCATAAGCTCTCCATTTTCAATTGGTACTTGTGAATAGACAGAAATTCTTTTTTCAATGGCCTAGAT GAGTAAGGTGAACATATTTTATCAGACTTTACAGACAATGCTATCCACAATATAATAAACGTATCATGAAAACAAATTGG GTCAAAAACATTAATTTAAGGTTTTCAAGGAAACTAAATATATTTGTTACAACGATACTGAGTAAAAGATAACACACACG TACTAAATCAAATTTAATATGACTAATTGATGCAGGGCACACTAGCATCAAGAAAACATGAACTTAAATATCAAATCAAC TCAGTGATTTGGTTTTATTTTATTTTCTGGTGGATTGCATTATCTTACAAGGTTACTAGATCACTATTATTAAGGGTTGG TAACCTTAACAAGTTGTTATTTAATTTTGAACTTCATTCCTAAGGGTGATTTAGTAATTTTGACATCAACTGGAATGGGG TTCAGGCATATGATTTGTTGGATTTTCTTTTGATTTGTAAGTTTAAATTATCATATTAATAATAAGTAATTTAGAATCTC AATCCTTTCAAAACTAGGATTCTATTGCTAATTCTTGAAGGATATGTTACAGAAAGAAGGTACATTTAAACAGTTAGGGC TGACCCAATAAATACCAACAATTAAAGTAAATTATAATGAGAATTTTTAAATTAATTAAAATAAGACGAGAGGTCTATAT TTAGGAGATGAGAGTCTTATTTCTTAGGGGGGGAATTTTAATTTTCTGCTTGGACCGCCCCTAAGAGTGTAGTATTTAAA TAAAACTTGAGGTCTTGAGGAGAAGGGGAAGAGATGAAGAGCCTGGTTGTCAGTGATTACTACCTAAAGGACCATAGGTG TGGGCGTGTGGCAGTGGCACAATGTTTCAAAAATCAAACAGCTCACTAATAACTACCCACCAAGGGTTCTTCCTGAACTG ACTCGTTTTATGCAAAATGGATTCTTAGTGTTTGTCAGGCCAAAAAAACTGTCTAACTTTATTATCAAATCAGCTGGTAC AGTTCAGGTTTTCAACACTGGTTTGATGACAAATTGAACATAGAGACAACACAAAAGAGCCAAGAGAAACGAAACTCGAT AACTTACATGTACCATAGGGTATTTTCTTTCTTCAGGAGTCAAAAACATACCAGAGCTTGTCCTGACATCACTCTTGATT CCCTGTGGAAGACAGAAATGTCATCGTGATTTGTGAAGAAATACATGTTTATAAATGCAAATGACCCCACTTGCTACTAG TGTGCTACATCTCCATGTTTTCTTTGATATGGATTTCATTTTCATTTTAGTCTATTTATGCAGTACAGAAAACATCTGAC TGTAGTTGCTTGACCATGTTGGAAGAGGCAAAATCAATTTTACTACTTTCTCATGATTAGCTCAAAATTATCTGAATGAC CTCAAAATAAAACTGTGCTTTGGTTTATAGAAGCTCTGATGCCAGTTGATAGAAACTGGATCAGATAGAGCACACAAATG GAGTGGTTACTACTGAAACAACTCACTCTACAAGAGTGCAATGCCTACTGGTATTCGAGAAATAACACTCTCCACAAAAC ACCTTGGTTCAACCAATTGCCCTACCTATTACCCTCTCCCCACTATTTATAGCCCCTCCTCACTCATTCTCTGGCCTACT CCCTTTAACTAACTATTCTACCAACTAACTAACCATAACAACTACCAGCTAGTTTGTTACAATAACAGCCTCTATCAGGG GTAATGATCCCCTACTTTCTGCTATTTCTCCTCTTCTAGACTCTCCTCATGAGATCTATTCCTATCATAACATCTATTGA TGGCCATGACCAGTAAAAATGAATTTCCAACAGAAAATAAAACTGTAAATGTACCTTTCCAGTCTTAGTATCCACTACTG TTGAAATTTGCAGGCGAGGGAGGGCTATAGCCCTTAGATAATCACATTCCTGTAAAGATAAATTATTTTGAGTACACGCC TGAGAAGTTTTTATTAAGC
CDS sequence (LotjaGi5g1v0365000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGTGAGAAGAGAAAGCGAAATAACAACAACAATGATGATAGAGGAATGAAAACGAAAAAGAAGGAAAAGGAAAA GGTGGCAAATGAAGGAGAAGGAGGTTCTATTTCTTCTTCGTCGGAGGAGCAATTGCGTTTTTTGGTGGATCAATTTCAGG CCGCCAAGGGTGTTCAACTTTCTTCTCTGGAGTTGGAATCCCTCACCGCAGATAGATGCATTTTGGAACGACAACATCAT TCTGATGATGTTACACAATTGGCCAATACTATCAAAGCAGCTTTTGGGGCTTCATGGAAACACCTGCTCTGTGATTCTGT TTCTCATGCTAACATCCCTGCTGGTAGCCCCGCCCTTCTTATCCTCACTTCCTCTGCCTTAAGATCCATACACCTTTTAA GGGGCTTTCGTTCTATGACAAAAGAATGTCAACCTGTCAAGTTATTCTCAAAGCATATCAAAGTTGAACAACAGATTGCT TTGTTAAAAAACCGTGTTAACATTGCTAGCGGCACACCAAGCAGGATAAAGAAGCTTATTGACATTGAGGCGTTAGGCCT TTCAAGGTTACAAGTACTTGTGCTTGACATGCATCCGGATGTAAAGGGCTATTCTTTATTCTCCCTTCCACAAGTCAGAG ATGAATTCTGGGACCTGTTCAAGAATTATTTTTATGAACCAATGATCAAGGGTAATCTGCGCATTTGTCTCTATGGTCCA TACCAGCTGGCTGCTCGTTCAAAAGGCAAAAAAGGACTTCCTGTTCCTGATAAGTAA
Protein sequence (LotjaGi5g1v0365000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASEKRKRNNNNNDDRGMKTKKKEKEKVANEGEGGSISSSSEEQLRFLVDQFQAAKGVQLSSLELESLTADRCILERQHH SDDVTQLANTIKAAFGASWKHLLCDSVSHANIPAGSPALLILTSSALRSIHLLRGFRSMTKECQPVKLFSKHIKVEQQIA LLKNRVNIASGTPSRIKKLIDIEALGLSRLQVLVLDMHPDVKGYSLFSLPQVRDEFWDLFKNYFYEPMIKGNLRICLYGP YQLAARSKGKKGLPVPDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| MobiDBLite | 1 | 31 | 31 | - | – | |
| Pfam | 5 | 238 | 234 | 2.5E-26 | ||
| PANTHER | 6 | 238 | 233 | 9.8E-81 | ||
| Gene3D | 72 | 198 | 127 | 8.0E-6 | – | |
| CDD | 116 | 196 | 81 | 4.97874E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0365000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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