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LotjaGi6g1v0004900.3

Overview

Field Value
Gene ID LotjaGi6g1v0004900
Transcript ID LotjaGi6g1v0004900.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; TAIR: AT3G23300.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1; TrEMBL-Plants: tr|A0A151T1P6|A0A151T1P6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0004900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:971760..976786) extracted from Lotus japonicus Gifu genome v1.2.

GCACAGGGAGATGGGGAGGGTGATATTGTACCGAAGAGTTACCCCGTAAGTTTTCACGCTAGTTTAAGCTTTAGACACAT TCACTCTATTTTGGCACAAAACACCCTTATTTTGGTTCTAAGCTTGCACTTTATTATGCCTCTACTATTCCATTTATTGA GTTTATATAATTCCGAAAGCCTGACCAGACAAATAATAAATGTTTGTTGTGAGTTGGTAGGAGAAAATGCATATCTGAAC TATAGAATTCTTTGAGTAAACCCCCATTTTGATTCTTAACAATGCTTTGTCTTTTTCAAGGTTTGTGATGATCGTCATTC AGAGTTGATTCCCTGCTTAGACAGACATTTTATCTATCAAATGAGACTGAAGCTGGATCTTTCTTTGATGGAACACTATG AGAGACATTGCCCTCCTGCCGAAAGGCGGTTCAATTGCTTGATTCCTCCCCCGCCAGGATACAAGGTAAAATATGCTGAA ATTAGATGTGATCTTTAACTTTAACATGTTCTCATTGATCCATTTGTATCGTTTGTCAGTTTCAAGCAATTGATGTTTCT GTGGTGTTGCAGGTCCCTATTAAGTGGCCTCAGAGCAGAGATGAGGTGTGGAAAGCTAATATACCACATACTCACCTTGC AACTGAGAAGTCTGACCAGAACTGGATGATTGTAAAAGGTGAAAAGATATTCTTCCCTGGAGGGGGTACTCATTTCCACT ATGGAGCTGATAAGTACATTGCATCAATTGCAAAGGTAAGGCTTCCTTCTTATCCCTATAAAGCAGAGTGAAATCATATA TATAGTCAGTTTTTTCAATTGGTAGTCTCATTGGACTTTATGTGCTTATGCAAAGTATATATTCATTGGTTTTATAGATG GAGTGGAGATATGATTCACTCATAATAATATTCTTTATATCATTAAAAGACACTGAAATCTTATGTGATGTCTTGGAGGG TCTGCAAGCACGGATGTTGCGTGTTAATATAAACCTGTATTTCATTTTATATAGGGTTGTCGCTTGTATTTTAGACTGAG TTGTTTCTACTACCTTGTAAGGCTAGTAAGCGTTCTATTAAGAAGTAATAAGAAAACTCTCTATCTCCTGTGGACGTAGG CCCACATGCCGAAGCACATTAATTCTGTATGTTGCTGTTCTTATACCTCATTTGTCATAAACTCTCTTGCGCTATTTCAT TTCGGTTCCCGATTTTGGCATTTGCATTACATTATTTAATAGACTTTCCAATACCATGTTTGACAGTATTGGTTGTTTGA TGCATTCTGCTTATTTAGACTTACTTTCAGTTCATAGATAAGTCAAAATCTCAGTTCTTTTGTATCACCAGATGCTCAAC TTCTCCAAAAATAATCTTAACAATGAAGGAAGACTGCGGACAGTGCTTGATGTTGGCTGTGGAGTTGCTAGTTTTGGAGC TTATCTTCTTTCATCTAATATCATTGCAATGTCTTTGGCACCCAACGATGTGCATCAGAATCAGATTCAATTTGCTCTAG AAAGAGGAATTCCTGCATATCTTGGTGTCTTGGGAACTAAGAGACTTCCTTACCCAAGCAGATCTTTTGAACTTGCACAC TGTTCTCGCTGCCGGATTGATTGGATTCAAAGAGATGGAATACTTCTCCTTGAGCTAGACCGGTTGCTTCGGCCGGGAGG TTATTTTGCATACTCGTCTCCAGAAGCATATGCTCAGGATGAAGAGGATCTAAGGATATGGAGAGAAATGAGTGCCCTTG TGGGACGTATGTGTTGGAGAATTGCTTCAAAGAGGGACCAAACTGTCATCTGGCAGAAGCCTCTGACAAATGATTGCTAC ATGGAAAGAGAACCCGGTACTCGCCCTCCTCTATGCCAGTCTGATGATGATCCAGATGCTGTTTGGGGAGTGAACATGGA AACTTGCATCACTCCTTACTCTGAACGTGAGTACCTTTTTCTCATGTGCTACAAGTTATTTGATGGTTTTTGCATTTTAT TTTCATGCTTTCTAGTTGTTTCTTTCTTACTGCAATATATTCTTGCTTCTTTTCTATTTGGTGTATCTGCTAAATGTATA TTTGTTTGTGGATTTTATGGGACATTCTGCAAATGAGTTCTCTTTCTGTTATTCCTATGGATAGTTTAGTTTCTCAGAAG CAAATAAACTGGGCCCGAGAAGTGAGGGTTGCTAAACATGAACTCCCACTTGGTAGAGCAATTGTAAATTATAAGAACTG CTTATTTATAGCATTGATTCAATGAATGACTATTTAGGTCAATAGTCATTTTCATCTTCATCCTATCTAATTTGATTGGG GAGTATCCCCTGTTTAAGATTTACCTGGTGAGTTGATTGGAACATGTTCATTATGAAAAGAGAGGAAGGGAAGGAGTGAA AACATTGAACTACTAGGCTGATTATTACTAGGGAATGGCCAAAGGAGAAACTGTGATATAATGGCAATGTATTGAATGCT TACTGAATTATAATAGTTAAAAATTCCAGGTTCATGTAGACAAACAGTGGTAATATTTTCCCCCTCTATGGAAGAAGAAA TCTACTTAATTAGGCCAACGTATCCATCTTGACTGCTATTACAAATTTGCAATTAACATGGGTTAAATATGCTTTTTGTC CTTGTAAAATTGACACATTTTGTTTTTAGTTCCTATTAAAATTTTATTCGTTTTATTCCTTAAACAATATAGAAGTTATG TGGTTTTAGCCCTTCATGGGGTTTAAAGACTGACTAAAACCACCTATGACTTTTGTATTTTGTATTGACTGAAAGCGAAT TAAAATTTTCTAGGGACTAAAACCAACAATTTCAAATTTTACAGGGATGCAAAACATATTTAACCCGAGTTAACATTACT CATTAGTCAATCCTCTAGTTATCTCGTGTTATATGACTTGTATCATTCTTGAATGACTTGTTGTGAGCTGATACTGATTG CTACTAAGCCCTTAATGTCTATCATTAGATATAATTAATTTTTTTCCATCTTATGCTAAAACTTTGCTTAGTTTTTTTTT TATTCAAGTTCTGATTTATTAAGAAGACCATTTCTATTGAGGTTTAGCCATTTATAAGAGCTGTGGGTATGAAACTCCAT CTACTGAAACTTTTGTTGATTTTATCAGATGACCACAGAGCCAAGGGTAGTGAGTTAGCTCCATGGCCTGCAAGATTGAC CAGTCCTCCTCCTAGATTAGCTGACCTCGGCTATTCAAATGAAATGTTTGAAAAGGACACGGTAATTGGAATTTGCGATT TAACCTCATGTAGTTAGGCTTTTGTTCCTGTGAGCATGTAAATTATTGAATGATAACAAAGATACAAGATAAATAGGCTA TAGGCTTAACTTGTGTCAATGTGGTACAGGAGTTATGGCAAGGAAGAGTTGATAATTACTTCAATCTCTTGAGTCCAAAA ATGTCGTCAAACACGCTGCGGAATGTGATGGATATGAAAGCACACATGGGTTCATTTGCAGCTGCTCTTAAAGACAAGGA TGTTTGGGTGATGAATGTTGTACCTCATGATGGACCAAGCACACTTAAACTGATATATGACCGAGGCCTCATAGGGAGCA CCCATGACTGGTACTAGTACTGTTTCCCTGAAACATAAATTGATTGCTTCTTTGATATCTTTCTATTCAATTGATCACTT TCACCTTTTGGCCTCTTTAGATGGTATCTGATTTCAAGATTCATGTATTAGCTGGGCTTTGTTTTCTGTACTTTAGCTGT GGCGTTTAACATGAGAGCCTTGTTTTTTATTGCTTTTCTGATGAACACTTAACAAAATTTCATCTTGATTATAATTTAGA CAATAGTAAATAGTATCTTTGTAACTAACTTTTTAAATTATAATCTTAAACAAATATTTGTAATGAGAAAAAAGGTTTTC TTTCTTTGTTGTTCTTGTATAATCTTAAACACACTGTTAATAGACCATTGTATGAAAAACATTATTTTCAATCAATCAAA ATCATGGACTTATGCCTCTAACAAGTAACAATGTTGCTTAAGAAATTGTATTTTGAACATGTTATCTTCAGTTGGGTCTT CCTTTTACTTTTTTCTATTTTTTTAAGGAATACACGAACTGTTATGTAGAAGATCTCCAATGACCCAGCTGATTGTGAGA GAACTTGGTAATTTGACTGAATAAGCTATTGGAAGTTGGGTGTGTTTGGGTAAACAACTCAGTTAAGCACTTATCAAATG TTAATTAATTTGATAAGATTATTGAAATAAGCTCACAATAGCTTATAAGTAGGTATAAGCGCTTATTCATAAGCTACTCT CATCAACTTATGAAAATAAGTTCAACATAGTTTACAGGTAAGTCATAAACTTTCCAAACACTTGCATAAACACTTATGGT CTAAGATAAGTTCAAATAAGCTCTTCCAAACGCGGTTGTTAGTTCATGCTAGAACCTGTTGTCTATCCTTGATTCAGTTA TTTATTTTTGTGAGCGTTTCCTCATGATTAGATAAGGTAAGTCATAAGATATTTTCATAAGCTTACCAAATGCTTGTATA AATGATTATGATATAAGCTCAAATAAACTCTTATCCTCGATTCTGTTATCTTTTTTTATTAGCATTTCGTCCTTATATTC CTTGGAATTGATCAGATAATTTGAGTTTGGATGTGATTGACTAAACTGATGATCTATTTGAACAGGTGTGAAGCATATTC AACATACCCCAGGACTTATGATTTGCTCCATGCATGGACTGTTTTCTCTGACTTGGAAAAGAAAGAGTGCAGCGCAGAGG ATCTATTGCTTGAGATGGACCGCATGCTCAGGCCTACTGGTTTCATAATCATCAGGGACAAACAACATGTGATTGATTTT GTGAAGAAGTACCTCACAGCAATGCACTGGGAAGCAGTTGCAACTGCAGATTCCAGTTCTGACTCTGAACAGGATAGCAA TGAAGTTGTTCTTGTTGTCCAGAAGAAATTGTGGCTCACCACTGAAAGCTTTAGGGATACAGAATAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0004900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTGTTATTTATTTTTGTGAGTGTGAAGCATATTCAACATACCCCAGGACTTATGATTTGCTCCATGCATGGACTGT TTTCTCTGACTTGGAAAAGAAAGAGTGCAGCGCAGAGGATCTATTGCTTGAGATGGACCGCATGCTCAGGCCTACTGGTT TCATAATCATCAGGGACAAACAACATGTGATTGATTTTGTGAAGAAGTACCTCACAGCAATGCACTGGGAAGCAGTTGCA ACTGCAGATTCCAGTTCTGACTCTGAACAGGATAGCAATGAAGTTGTTCTTGTTGTCCAGAAGAAATTGTGGCTCACCAC TGAAAGCTTTAGGGATACAGAATAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0004900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTVIYFCECEAYSTYPRTYDLLHAWTVFSDLEKKECSAEDLLLEMDRMLRPTGFIIIRDKQHVIDFVKKYLTAMHWEAVA TADSSSDSEQDSNEVVLVVQKKLWLTTESFRDTE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.150
4 96 93 1.5E-5 –
Pfam
PF03141
7 101 95 5.5E-33
IPR004159
SUPERFAMILY
SSF53335
7 60 54 6.51E-5
IPR029063
PANTHER
PTHR10108:SF692
9 112 104 3.6E-54 –
PANTHER
PTHR10108
9 112 104 3.6E-54
IPR004159

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0004900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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