Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0009000 |
| Transcript ID | LotjaGi6g1v0009000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-adenosyl-L-methionine-dependent methyltransferase superfamily protein; TAIR: AT4G13330.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13; TrEMBL-Plants: tr|I1LAQ0|I1LAQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1726541..1730113) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATAATGTGGTGTCCAAATGTCTTGCTTTTTAGATTTTAACTGTGTCGTGTTGTGTCGGGTGTTCGTGTCAGAGTAA ATAAGTCATCCAACAAACTGTCACTCCTCTACATAAATTAACGGTTTTCGTTAGGGTTTTAGTTATACCCTTTCGTTATG TGGCGCAGAGGCAGAGATAGTTTCAGCCGTCTCCGCCGGTTCTCAGCGGCGGCACGACGCCGCTCGGAGGACGATGGTGA CTGGCTCTATTCCTCCGAGTGGTGGGGCTCGTCCCCTGACGACGGCACCACCGTTCTCCGATCAACTTCCGGCAAGGGAA ACGGCGTCGTCTCAGTCGTCGCACATCCCTCCTCCAGACCTGTTAGTTTCCCACTCATTCTTTCTTCAACAGCTTACCTC CCTTAGGCTGTGTTTGGAGGAACCATAATCAATTTTCGAATTGAATTTAAAATTCCAGAGAAATGCAATGCAATCTTTGG AAATTTCACATTTTCTGATTACCCATTTTGATTGCTTGAATGGAACTTGGGATTTTTTTTTGTACATAATTTCAGAGTAG AATGCATTGGTCAAGGATGGAAAGATGGCTGCAGCAGAGATGTGAGGAGGTGCATCCTGGATATGGGGATGGAGGGATTC TGAGGGTGCTTGGATATCAATGGCGGGTGCTTCGTTTCAATGACGATACGCGCCAGAGCACTGCAAAAGTAATGCTTGCT TACAACCAAAACAATCCAGATCTTGTCTATCTTATGCAGCAACCTCATTGCTTGGCTGTTCCATGTACATTACTTAACCT TTATCTTATGTGAATGAAGGGTTAGTTTTTAGTTAGTGATTGATTGCTATGATGCAATGCTGTATGATTGTACTTAAGAT TGAAGTAGCTACTAGGAAAGGTGCTAGTTATGTTGGTTAAATTATTAAATTAACTAATTTAATAACTAATTTAAGGATTA ATAGGTGTCAAAATTGGAGCGATCATTGTTTCACGTAGGATACTGAGCACCACAATAGACTCTATGCTATGCTTCATCTT CAAATTGAATCAGAGGGATCTTCTTTGTATACCCTCTAATATTGGGCCTGTTTTTTGCTTGTGAGGGAAATTACCTTGGT ATTTGGTTTCTATTGTTTACTGGCTGGTTCTTACATGCTATTTGGGAGACAACAGCTTTGTTGGTTGCCCTGCTATAATC TTGAGCTTCTTCTTACCTTTTTGTGCAATTAGATTACTTTCTTTCTTGCATTACTCCTTAATATTTGGTTTATGCAAATT GTTCCAGTAGCCTGGACCTGGACCATTTGATATTAGATGTTATATGCTATTACAGATTTTGATATTTTCTCTGGTCCTGA AATTTATTAGAAAAATCCTAAGAATGAGTATAGGTATTAGGGTACATTGTATGAATGTGTACAGAGTTACACTTTAGTAG TTGCTGACTGTACTAACAGTCAGCACTAGGGTTGTTATAATGAGCTGGCAATTCAGTTAGGCTATGCGGTTATGCTTAGC TGTCAACTGAGTCAGTTAGAGTTTGAGTTTGTTAAGCTTGTTGAACAAGCTATAGAGTTCTATATAAGTTGTAATCAGTC TCTTGTATCATTAGCTTTTCAATCATCAATGATAAACACTTTTTACAATTCTGAGTTTATCTAACAATAGGTAAAGGATA TTATAGGGTATTGTATTTGTTCAACAGAATTTGAATAATTTCATACAAAATGCATTTTTTGTGAATCAAAAGTTTTTTTA TTTATTTTAAATATACACATTTTATAGTTTCATGTAATTTGATTTTACATGATTTAGCTTCATGCATGGCTCCGGCATGC TCATAATTACATCTCTGTCGATGAGGACATAGGGGGGGGGGGGGGGGGGGGATGAACATTGAAAGGATGAACCTCATCAT CTGTCCTTGGAGTTGATTTTATGTTCTTCTTCAATTAAATCCCGAGTATCCTTTTGATTTATTTAGGGCTGTCTTGCAGA TGTGAAGAGTATGGTAGCTGCTGGGTTGACTACCATAGCTTCATGTAATTTTGATATTATCAGCGCACGGCAAGGAAAGA AAAACATGCACATCTTATGCGTCGGGCATGGTGGGGGAAGTTTACCACTGTTTTTAGCAAGTAATATCCAAGGTGAACAT TTTTCTACTTTTGTAGTTTTTCTGGTTTTAAGCTGTAGCTTGAGATATCCAAATTAAAAGCCATTGCTTTTAAATGGAAT ATATACATACATGGAAATATATCTTCTAATGTGTTTTAATTTAGTATGATGCGGAAAATTACTTTTAAATTGCATATTAA ATAGAAATGTGCTGGAGCTGTGTGCACCAGGCTGCCCTTTCTCACATCCAGCATTATGAGGGATAAGGCTTGGACTTGTT GTCATTACTCATATTAGTCACATAGGGGCAGTTGAGCTATAGTGTCAATAGAAATGACCTGAAACTACGTATCATGTTCA TATGCACGGGCAGCACAGCCTCTGGTTTACTGAAATACATTTTTACCTGTGCCATAAAACCCTGGCTACTTCTATTGTGT GCTTGTTTATTTGACGTGCTTTTGGGAATTGCTTTACAGCGCTCTTCCCTGTTTACTTGTCTTGGTAAATTTCTGATTCA ATTGAACCTTACTTGATTTGCTGTGCTCTGTCCAGGTGCCATTGTCCATGTAGTTGAAATCGATCCCCTTGTTATCTCAG CCTCGACTCGAGCTATGGGGTTCCCGGCTTTTTCACAAATGACACAATCCGGTGACCGGGCCATTGCAAAACCTGATATC ATTGAAGAAGCTATGTGGAAAGGTGTCCATGAGAGGATTTACCTACATGAAGCAGATGCTGAGGAATTTGTTGTCAATAA TACCAATCTATATGACATGGTCTTTATTGATGCATATGATGGTGATGACATATTTCCCCACAAGTTATGGGACCCAAATT TGCCGTTCCTTAAAGCTCTTAATAGTCACCTACATCCCAAACATGGTACTGTTGTGGTGAACTTGCATTCTGACTCTGAC ACCTCGAATCACGATGGATCTATTCCATCAGGGTTTGAACCAATTTTGCCAATGGGAAAGTATGTGTCTCAAGTTTGCCG AGCATACAAGGACGTGCTTATAGGAACTGGAAGCTCTTGTGAAGAAAAAATGGGTTCTGGTATTGCTTTTACTGTTGCAG TTCCCTGGGTCTGTAATACGTCCCTAGTTGTGTGTAGAGGTTTTGGTACAGATGGGGAGTATATTAACCGGGATTTGGTT GTAAACACTCTCATATCCAAATCCCTAGAAATTGAACATATTATGGACTTGCCATTCTCATGTTTGGAATACATAAAAAG AGGTTTTGTTCTTGTTGACTAATTTATGTGCCACAATATAAATGGAGTTGATTTATTCTTCTCAAATCATTGGTGTACAA CTCGGACAAACTTGGCCTGCCAAACTGAAAAATCTGCGACTTGGGTAGTTTGATACTAAATTGGGCCTTAGACATATACT ATGTTTTTCAGCTAGCTTAAAGCTTATTTAACAAATTTAAAATTTCATTTGAA
CDS sequence (LotjaGi6g1v0009000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCGCAGAGGCAGAGATAGTTTCAGCCGTCTCCGCCGGTTCTCAGCGGCGGCACGACGCCGCTCGGAGGACGATGG TGACTGGCTCTATTCCTCCGAGTGGTGGGGCTCGTCCCCTGACGACGGCACCACCGTTCTCCGATCAACTTCCGGCAAGG GAAACGGCGTCGTCTCAGTCGTCGCACATCCCTCCTCCAGACCTAGTAGAATGCATTGGTCAAGGATGGAAAGATGGCTG CAGCAGAGATGTGAGGAGGTGCATCCTGGATATGGGGATGGAGGGATTCTGAGGGTGCTTGGATATCAATGGCGGGTGCT TCGTTTCAATGACGATACGCGCCAGAGCACTGCAAAAGTAATGCTTGCTTACAACCAAAACAATCCAGATCTTGTCTATC TTATGCAGCAACCTCATTGCTTGGCTGTTCCATATGTGAAGAGTATGGTAGCTGCTGGGTTGACTACCATAGCTTCATGT AATTTTGATATTATCAGCGCACGGCAAGGAAAGAAAAACATGCACATCTTATGCGTCGGGCATGGTGGGGGAAGTTTACC ACTGTTTTTAGCAAGTAATATCCAAGGTGCCATTGTCCATGTAGTTGAAATCGATCCCCTTGTTATCTCAGCCTCGACTC GAGCTATGGGGTTCCCGGCTTTTTCACAAATGACACAATCCGGTGACCGGGCCATTGCAAAACCTGATATCATTGAAGAA GCTATGTGGAAAGGTGTCCATGAGAGGATTTACCTACATGAAGCAGATGCTGAGGAATTTGTTGTCAATAATACCAATCT ATATGACATGGTCTTTATTGATGCATATGATGGTGATGACATATTTCCCCACAAGTTATGGGACCCAAATTTGCCGTTCC TTAAAGCTCTTAATAGTCACCTACATCCCAAACATGGTACTGTTGTGGTGAACTTGCATTCTGACTCTGACACCTCGAAT CACGATGGATCTATTCCATCAGGGTTTGAACCAATTTTGCCAATGGGAAAGTATGTGTCTCAAGTTTGCCGAGCATACAA GGACGTGCTTATAGGAACTGGAAGCTCTTGTGAAGAAAAAATGGGTTCTGGTATTGCTTTTACTGTTGCAGTTCCCTGGG TCTGTAATACGTCCCTAGTTGTGTGTAGAGGTTTTGGTACAGATGGGGAGTATATTAACCGGGATTTGGTTGTAAACACT CTCATATCCAAATCCCTAGAAATTGAACATATTATGGACTTGCCATTCTCATGTTTGGAATACATAAAAAGAGGTTTTGT TCTTGTTGACTAA
Protein sequence (LotjaGi6g1v0009000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRRGRDSFSRLRRFSAAARRRSEDDGDWLYSSEWWGSSPDDGTTVLRSTSGKGNGVVSVVAHPSSRPSRMHWSRMERWL QQRCEEVHPGYGDGGILRVLGYQWRVLRFNDDTRQSTAKVMLAYNQNNPDLVYLMQQPHCLAVPYVKSMVAAGLTTIASC NFDIISARQGKKNMHILCVGHGGGSLPLFLASNIQGAIVHVVEIDPLVISASTRAMGFPAFSQMTQSGDRAIAKPDIIEE AMWKGVHERIYLHEADAEEFVVNNTNLYDMVFIDAYDGDDIFPHKLWDPNLPFLKALNSHLHPKHGTVVVNLHSDSDTSN HDGSIPSGFEPILPMGKYVSQVCRAYKDVLIGTGSSCEEKMGSGIAFTVAVPWVCNTSLVVCRGFGTDGEYINRDLVVNT LISKSLEIEHIMDLPFSCLEYIKRGFVLVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 426 | 409 | 8.6E-188 | – | |
| PANTHER | 18 | 426 | 409 | 8.6E-188 | – | |
| Gene3D | 103 | 327 | 225 | 3.7E-35 | – | |
| SUPERFAMILY | 108 | 316 | 209 | 2.41E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0009000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…