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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0010600 |
| Transcript ID | LotjaGi6g1v0010600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cortactin-binding protein 2; TAIR: AT4G13540.1 golgin family A protein; Swiss-Prot: sp|Q5T1M5|FKB15_HUMAN FK506-binding protein 15; TrEMBL-Plants: tr|A0A151U2S2|A0A151U2S2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0010600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1970296..1971948) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTGGTGCTTTTTCAATCAATATCAGGAGCCTAGCCTTTACTCAACTTTTATGCCGTCCATACCCATTTCATTATTTC ATTATTATCATTTCATCTATCACTATAAGATCAAAATACAACACCCATCATCATACATTGATAGTTCATGTAAGTGGCTC CAAAGATGGGTGGTACTGTTAGCAAGGGTGAGAGGAAGTGTTCTGAAAAACATGTGATGAATTTGAAAGAGAAAGTGAGA CTTCTTCAGGAGGAAATAAAGGAGATGATGTATGAGAGGGAGAAGGAGAGTAGGAGCTATGAGAGGGACATAATGGTGTT CACTTTTAAGGAGGCAGACTGGAAGCAAGAGGTGAAGAGGGTGAAAGAGGAAGTGAAGCAGCTGAGGAATTTGGTGGAAG AGAAGGAAGAGAAGATAAGGGAGATGGAAGAGCTTGGAATGTTGGAGAAGAATGGTGAGAAAGAGTGGGAGTTAATGGGA ACTAAGCTCTTGGTTCAACAAATGAAGGAAGAGAGAGCAAGGAGAGATGAAGCTGTGGAGAAGTGGAAGCAACTTTATCT TGCAATTAAGACAGAGCTGGATGATCTCATTCAGAGAACATATGATGGTCTCTCTCTCACTCACTACTTTTTTTTTTATG TAGTAAGCAAATCATAATTTGTATGACTAGTATTTTGGTGATTTGCCTGTGCCTTCTTATGCTATCAATGCCCCTTGAAA AGTAGTTTGTCCAGGTGGGGTTCTATGCCACAGTTCCTAAAAAAATCAGTTAACTGCTTGTTTGGATGCATGGTATATTT TTCACGTTTGAAGGAGAATTGATTCTGGAAAATTTGATCGTAAATCCAAACAGGATATATAAGTTATAGTTTTGGTGATT ATTTTACTTTTTATTTTTATGTAAGATAATTACATAAGGTTGAGTTAGAATCAAATGTGTGTGTTGTTTTGATTTGGTTG AGCTAATTTGTTATTGGGCTATATGTTCACAGGGGATGGTCTGTATTGGAAAGCAGAGGAAAATGACATCCAAATGGAAA ACCTGAAGAAAGAACTTTATGACAAGGAAGAAACCATCAAAGCCTTAAAAGCCCAACTAGTTTCAATGGAGAAAGAAAAG TACAAAAAGGAAAGAGAGTTTGACTTGTTGAGGCAAAGTTTGAGGATCATGAATGGAAAGAAGAATTCAATTCAAAGTAA AGAGAAGCACTTGAAAAGCAAATTGAGAATTTAAGATGTAGATGTGGTGCGGATCAAAAAAAAAAGATGCATATGTGGTG GTGCTTAAGGACTAGATTCCACATCCAAAATCAAACAATGTTATGTATTAACTGGGTTGGTTTGTATCCTGTAACAGCAC CTATTTTCCTTTTCTTTTCCTTCCTTCTTTTGCAGAAAAATAAGCAAGGCAATACTTCCATAGTAGAATTTTTTTTTCTT GGACCTGGAAAAAGAAAGAAAAAATGAAGGAAGATTAGCAATTTTTCTTCTTGGACTAGCACTTAGCTTAGTTACTGAAT ATGCCATGTCTAAAGACTAGTGAAGGAAAGAAAGAAAGAATATAGCTTTATTCTTCTTTTCATTGTGTAGATTCAAACAA CGTTTTGTTTCAAAAGCTTTTTTGTTCTACTCTTTATATTTGGCATATATCAC
CDS sequence (LotjaGi6g1v0010600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGTACTGTTAGCAAGGGTGAGAGGAAGTGTTCTGAAAAACATGTGATGAATTTGAAAGAGAAAGTGAGACTTCT TCAGGAGGAAATAAAGGAGATGATGTATGAGAGGGAGAAGGAGAGTAGGAGCTATGAGAGGGACATAATGGTGTTCACTT TTAAGGAGGCAGACTGGAAGCAAGAGGTGAAGAGGGTGAAAGAGGAAGTGAAGCAGCTGAGGAATTTGGTGGAAGAGAAG GAAGAGAAGATAAGGGAGATGGAAGAGCTTGGAATGTTGGAGAAGAATGGTGAGAAAGAGTGGGAGTTAATGGGAACTAA GCTCTTGGTTCAACAAATGAAGGAAGAGAGAGCAAGGAGAGATGAAGCTGTGGAGAAGTGGAAGCAACTTTATCTTGCAA TTAAGACAGAGCTGGATGATCTCATTCAGAGAACATATGATGGGGATGGTCTGTATTGGAAAGCAGAGGAAAATGACATC CAAATGGAAAACCTGAAGAAAGAACTTTATGACAAGGAAGAAACCATCAAAGCCTTAAAAGCCCAACTAGTTTCAATGGA GAAAGAAAAGTACAAAAAGGAAAGAGAGTTTGACTTGTTGAGGCAAAGTTTGAGGATCATGAATGGAAAGAAGAATTCAA TTCAAAGTAAAGAGAAGCACTTGAAAAGCAAATTGAGAATTTAA
Protein sequence (LotjaGi6g1v0010600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGTVSKGERKCSEKHVMNLKEKVRLLQEEIKEMMYEREKESRSYERDIMVFTFKEADWKQEVKRVKEEVKQLRNLVEEK EEKIREMEELGMLEKNGEKEWELMGTKLLVQQMKEERARRDEAVEKWKQLYLAIKTELDDLIQRTYDGDGLYWKAEENDI QMENLKKELYDKEETIKALKAQLVSMEKEKYKKEREFDLLRQSLRIMNGKKNSIQSKEKHLKSKLRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 223 | 223 | 4.1E-94 | – | |
| PANTHER | 1 | 223 | 223 | 4.1E-94 | – | |
| Coils | 10 | 37 | 28 | - | – | |
| Coils | 56 | 96 | 41 | - | – | |
| Coils | 155 | 196 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0010600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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