Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0022600.2

Overview

Field Value
Gene ID LotjaGi6g1v0022600
Transcript ID LotjaGi6g1v0022600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Chalcone reductase; TAIR: AT1G59960.1 NAD(P)-linked oxidoreductase superfamily protein; Swiss-Prot: sp|P26690|6DCS_SOYBN NAD(P)H-dependent 6'-deoxychalcone synthase; TrEMBL-Plants: tr|I3SGT1|I3SGT1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0022600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:4236674..4237940) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCCGCCATCACCACCACAGTGCCTCAAGTAGTTCTCCAATCCTCCACCGGGCAACGGAGGATGCCGGTGATGGGGCT CGGCACCGCGCCGGAAGCAGCCAGTAAGGTTAGCACAAAAGATGCAGTCCTTGAGGCCATCAAGCAGGGTTACAGGCATT TTGATGCTGCTGCTGCATATGGAGTTGAGAAGTCTGTTGGAGAAGCCATTGCAGAAGCACTTCAACTTGGACTCATTGCT TCCAGAGATGAACTCTTTGTTACTTCCAAACTGTGGGTCACTGACAACCATCCTCATCTCATTGTTCCTGCTCTTCAGAA ATCTCTAAGGTGAGTGATCATCACATCACAAATGCTTTCATTTTAATCTATATTTCTTTCTACATGAATTAATGTTCATG TTACTATCCATATATGCAGGACACTTCAACTTGAATACTTAGACCTCTTTTTGATCCACTGGCCTATTACTACTCAACCA GGAGGAGTCAAATACCCAATTGAAGTATCAGAGATTGTGGAATTTGACATGAAGGGTGTGTGGTCATCCATGGAGGAATG CCAGAGACTTGGACTCACCAAGGCCATTGGAATCAGCAACTTCTCTATCAAGAAGCTTGAAAAATTGCTCTCTTTTGCTA CCATCACACCTGCAGTCAATCAAGTAATTAATTAATAATTAGCTTAACATTACTTCACTTGAATTTGAAAGAAATCATCG ATTAGCTGTTAGATCTAATTAATTAATTAATCCAAACAGGTGGAAGTTAACCTTGGTTGGCAACAAGTGAAACTTAGAGA GTTTTGCAAGGAAAAGGGTATTGTCATAACTGCTTTCTCACCACTGAGGAAGGGTGCAAGCAGGGGAGAAAATCTAGTGA TGGACAATGACATACTCAAAGAATTGGCAGATGCTCATGGCAAGACTATAGCTCAGGTATCTTTTATACTGTTGAAAAGT CTCACATTGGTCGGAGATATGTTCTTTATAAGTCCTTATGTGTTTTAATGTAATTACTGCTCAGAAAATTAATCTCTAAA CATTATTTTTACAGATTTGTCTTCGATGGTTATATGAACAAGGATTAACTTTTGTGGCCAAGAGCTATGACAAGGAGAGG ATGAACCAGAACTTGCAGATCTTTGATTGGTCATTGACTGAGGATGATTACAAGAAAATCAGTGAAATCCATCAAGATAG GCTCATCAAAGGACCAACCAAGCCTCTTCTTAATGATCTCTGGGATGAGGAATGAATGGACACTCAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0022600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGCCATCACCACCACAGTGCCTCAAGTAGTTCTCCAATCCTCCACCGGGCAACGGAGGATGCCGGTGATGGGGCT CGGCACCGCGCCGGAAGCAGCCAGTAAGGTTAGCACAAAAGATGCAGTCCTTGAGGCCATCAAGCAGGGTTACAGGCATT TTGATGCTGCTGCTGCATATGGAGTTGAGAAGTCTGTTGGAGAAGCCATTGCAGAAGCACTTCAACTTGGACTCATTGCT TCCAGAGATGAACTCTTTGTTACTTCCAAACTGTGGTCAGAGATTGTGGAATTTGACATGAAGGGTGTGTGGTCATCCAT GGAGGAATGCCAGAGACTTGGACTCACCAAGGCCATTGGAATCAGCAACTTCTCTATCAAGAAGCTTGAAAAATTGCTCT CTTTTGCTACCATCACACCTGCAGTCAATCAAGTGGAAGTTAACCTTGGTTGGCAACAAGTGAAACTTAGAGAGTTTTGC AAGGAAAAGGGTATTGTCATAACTGCTTTCTCACCACTGAGGAAGGGTGCAAGCAGGGGAGAAAATCTAGTGATGGACAA TGACATACTCAAAGAATTGGCAGATGCTCATGGCAAGACTATAGCTCAGATTTGTCTTCGATGGTTATATGAACAAGGAT TAACTTTTGTGGCCAAGAGCTATGACAAGGAGAGGATGAACCAGAACTTGCAGATCTTTGATTGGTCATTGACTGAGGAT GATTACAAGAAAATCAGTGAAATCCATCAAGATAGGCTCATCAAAGGACCAACCAAGCCTCTTCTTAATGATCTCTGGGA TGAGGAATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0022600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAITTTVPQVVLQSSTGQRRMPVMGLGTAPEAASKVSTKDAVLEAIKQGYRHFDAAAAYGVEKSVGEAIAEALQLGLIA SRDELFVTSKLWSEIVEFDMKGVWSSMEECQRLGLTKAIGISNFSIKKLEKLLSFATITPAVNQVEVNLGWQQVKLREFC KEKGIVITAFSPLRKGASRGENLVMDNDILKELADAHGKTIAQICLRWLYEQGLTFVAKSYDKERMNQNLQIFDWSLTED DYKKISEIHQDRLIKGPTKPLLNDLWDEE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.20.20.100
4 94 91 2.5E-25
IPR036812
PANTHER
PTHR11732:SF431
5 92 88 8.3E-153 –
PANTHER
PTHR11732
5 92 88 8.3E-153
IPR020471
PIRSF
PIRSF000097
7 101 95 4.0E-22
IPR020471
SUPERFAMILY
SSF51430
20 257 238 4.32E-64
IPR036812
CDD
cd06660
21 248 228 3.25289E-62
IPR023210
Pfam
PF00248
26 91 66 1.9E-5
IPR023210
PRINTS
PR00069
46 70 25 8.0E-19
IPR020471
ProSitePatterns
PS00798
50 67 18 -
IPR018170
PANTHER
PTHR11732:SF431
93 268 176 8.3E-153 –
PIRSF
PIRSF000097
93 261 169 3.2E-41
IPR020471
PANTHER
PTHR11732
93 268 176 8.3E-153
IPR020471
Gene3D
G3DSA:3.20.20.100
95 268 174 5.8E-65
IPR036812
Pfam
PF00248
99 248 150 9.4E-27
IPR023210
ProSitePatterns
PS00062
107 124 18 -
IPR018170
PRINTS
PR00069
184 208 25 8.0E-19
IPR020471
ProSitePatterns
PS00063
217 232 16 -
IPR018170

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0022600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…