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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0032200 |
| Transcript ID | LotjaGi6g1v0032200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit; TAIR: AT1G61570.1 translocase of the inner mitochondrial membrane 13; Swiss-Prot: sp|Q9XGY5|TIM13_ORYSJ Mitochondrial import inner membrane translocase subunit Tim13; TrEMBL-Plants: tr|I3T032|I3T032_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0032200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:6046140..6048044) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTCGTTCTCGCATTCGCCGAGTGGATCACCGAGTAAAGTATCCGCGCAAGATCTCCAAAACCAGTTGAAAAGTCA ACTTGCGATGGAGTATGCTCAACAATTTCTTGAGGTATCCTATCCACCTATTTCCCCTATTTTTCTTACCATTCACGAAC ATCATTCTTTGCTTACATGCATATTTACTGTACAAACGAAACCCTAGCTAGCAACTCATTAAACTACTCCTCTGTTGTCG CTAGAATGCTATTGCTTACAATTAGGTCGCAGTGAATGCATTATGAATGCGAGCGAGGGGCGTAAAAATTGGAAGGAGAA GACAGTGATGTGAAGGAGTGTGAAACTGAGTAAGTTGTTGGAGAGGAGAATGGTGTAATGATTGAGGGGAGGAAATTAAA TGTGGATAAGATGGAGGAAGGGGAATCATAACAAATTATTGGGATGAATCAGAGTGGGCATTATGGTCTAGTATTTAAGT TTTGGTTTGTTGATTTATGTGTTTTTGATGTTTAGTGGTTGCAATAAGGTTTGAATAACCAACCCCTCACCGTTAGTGAT GTTCGCTTGAAACGAAGATTTTTCCCCTCGAGTTCTATCAAAATAGGACTGTATTTGACAAAAAAATCTAGGGTTTTATC AGTTCAGTGTTGTTGTAAGTTCAAACTGATCAGTGTACTGACCTCCCTGATGAAAATAGTAATAGTTTGCCTTTTGCAAC TGTTACTGTAGATTGTGGAAAAACACTTTTTTTTATTGGTTTGAGTCCAACTCATTCTTTACAGTTAATACATTTTGAGT TTTGAGTGCGGGTGAGGGGCACGTGAATTGTAAGGAAATGACAGTTATGGGGGGATTGTGAAACAGAGTATGTTGTTTTG GGGAGGATTATGGCGTGTAGCTGTACTTGTCTTTTTTTGTGTGTTCTGGTATCTAGTTCTGGTTTCTTTAATAATTTTCT TTTTTATGTAAAATGGTAGCAATGGGGGTTGAATGACTACACCCCATACCACTAGCCAAATCCGAGTGGCTTATAGTGTT TTCCCCTCAAGTTCTATCATATTTCACAGTACTAATACAAGTCCCTCTAATAGCAGGACCATATTGGACAGAAAAATTAG AGTTTGATCAATTTAGTTTGGTTCAAATCATCAGTTCAAGTCGGTAGTTTTTTTTTCCTCACCTCTAATAAAATAGAATA CCAACCACTGATCAATGGAATAGTTCATGAGAGGATGATAGAATACCAACCACTGATCAGTTAGGTGATGTGACATACTG ACCTCTGTGAGAGGATGATGAAATGGTAATAGTCTGTGTCTTGCTACTGTTATTTTTTACTGTGAAAAAACACTTGTTTT CCAATGTAAGATTAATGATGGATTTCTCATCATATGGGAAGAGATGCAGTTAATACACTTAGTTATTGATGTGTTTCTTG CACATGAATAATTAATTAGTGATGATAAGCTCTGGATAACTGATCCTTTTGAATATTGGTAAGTCTCAAGTTAAATTTGA TTTCTCTTACCATTTAAAGGTTAACCCCAGCCTCTTGTAAATTCTTGCAAAATGTACTATCAGACAAGTGAAGCATAAGC TAGGGTAAGACTGTAAGAACCCTACATATTCTGCTCTGGTGGTGTTATACTGACATAAGTCAAGAACAACATAGGGGATT ATTGTGTACTGATATTGCTCGCTGTTTTGTATGGCATAATTACACTTAATATTCCAATTGCCTTCCATTTTGCAGACAGT GAGAGGGAAGTGTTTCGAGAAGTGTATCACAAAACCTGGTTCAAGCCTCAGCGGGAGTGAAAGCAGTTGCATCTCAAGGT GTGTGGACCGATACATTGAGGCCACAGGCATAATTAGCAAAGCGTTATTTAGTGGTCAAAAATGA
CDS sequence (LotjaGi6g1v0032200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCGTTCTCGCATTCGCCGAGTGGATCACCGAGTAAAGTATCCGCGCAAGATCTCCAAAACCAGTTGAAAAGTCA ACTTGCGATGGAGTATGCTCAACAATTTCTTGAGACAGTGAGAGGGAAGTGTTTCGAGAAGTGTATCACAAAACCTGGTT CAAGCCTCAGCGGGAGTGAAAGCAGTTGCATCTCAAGGTGTGTGGACCGATACATTGAGGCCACAGGCATAATTAGCAAA GCGTTATTTAGTGGTCAAAAATGA
Protein sequence (LotjaGi6g1v0032200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSFSHSPSGSPSKVSAQDLQNQLKSQLAMEYAQQFLETVRGKCFEKCITKPGSSLSGSESSCISRCVDRYIEATGIISK ALFSGQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 84 | 84 | 2.3E-35 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 84 | 84 | 2.3E-35 | ||
| Pfam | 22 | 82 | 61 | 1.8E-21 | ||
| Gene3D | 29 | 87 | 59 | 2.2E-19 | ||
| SUPERFAMILY | 30 | 83 | 54 | 2.88E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mitochondrial intermembrane space | The region between the inner and outer lipid bilayers of the mitochondrial envelope. | ||
| Biological process | Chaperone-mediated protein transport | The directed movement of proteins into, out of or within a cell, or between cells, mediated by chaperone molecules that bind to the transported proteins. |
Expression pattern of LotjaGi6g1v0032200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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