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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0035600 |
Transcript ID | LotjaGi6g1v0035600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Serine/arginine rich splicing factor, putative; TAIR: AT3G13570.1 SC35-like splicing factor 30A; Swiss-Prot: sp|Q9LHP2|SL30A_ARATH Serine/arginine-rich SC35-like splicing factor SCL30A; TrEMBL-Plants: tr|F6GUK3|F6GUK3_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0035600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:6843206..6845905) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGATCTGGTGGCGGCGTTGTATAGTTCACCTAACGCACGCTCTCAATTCCAGACAAAGAAACATGAGAGGAAGGAGT TACACTCCATCTCCGCCACCACCACCGCCACGCGGTTACGGCAGAAGAGGCGGCGGTGGCGGAGGGAGAAGCCCCAGCCC TAGAGGCGGAGGCCGCTATGGCCCCCGCCCTCGAGATCTCCCTACCAGCCTTCTCGTTCGTAACCTTCGCCATGATTGCA GGCACGTTTCTTCTCTCATCTCATCTCATCTTCTCTGTTCAATTCTTCTTCGTTTCGTTTCAAATTGACAAAACCTAATT CAAAATCGTGTTATCGTGCAGGCCTGAAGATCTTCGCAGACCATTTGGTCAATTCGGTCCTCTTAAGGACATTTACCTGC CTAAGGATTACTACACTGGGTGAGTAGTAGTAGTAGTAGCAGTAGATTAAGCACTAGTCAATTCGATTCTCTATTCAATT TTTCATTGATTATCCACTTTTTTCAATTTGAAACATGAACAATTTTTATTTAGGGTTTTGCTTGAATTTCATTGATTTGA GACTGCAACTATTGTAATTAGCAAGTTTCTTAGGTTTTAGCAGTGATTTTGAGTTTTGAAGACATGTATCAAGTAAGTAC AAGATGTTATTGGTAGTGAAGATGTCAAGAACAAGAATTGACTTTGATTACAAATTATGAAGATGTTGCAAGTCTTGAAG ATTGATCTTATAACTGACACAAAGGTCAGCAGCCTAGTGCTTGCTTTATTATCCTGTCCTTACGATTAGGGGCTATTTCG GCAGCATCTTATTAACTGAACTTTTTAATTCTCAGCATGCTGTTCTAATATCAATCTGGGTTTGTTAATCTGATTGTCCG ACCGTGCTCACTGTTTTTTTATGGTGTTTTGGATTTTCCTTTGTTTGCCCGCTTTCCTTCCTTTTGCAGACAACCCCGCG GTTTCGGTTTTGTCCAGTTTGTAGATCCTGCTGATGCCGCTGATGCAAAGTATCATATGGATGGTCAAATTCTTCTCGGT CGTGAGCTGACTGTTGTCTTTGCTGAGGAAAACAGAAAGAAGCCAACTGAGATGAGGCATAGAGAGAGAAGGTAGGATTT TCTTTACTTATGCTGCGGATTATGGATTTAACCTTAGTTGAATAACTGCGATATACATGCACTTTTGATCTATATATGCT CATTAACAGAGATGAGCTGAGCTCTGATTAGGTTTTGTTAATTATATAAATGAAAGTGATTTGCTCACATTGAATTTGTT GTTTGAAAAGTATTTTTATATTGTTGGCACTTGGCACTGCAGCCTTTTCCTCTAGTAAGTCGAACCATATATGGCTACAA GCAAACTATCGTTGTCAATTTTATTAGGTCCTAAATTTGATTCGATGAGATCATTTTAATAGCCTTGTTTCCTCTGAAAT CTATGATTTACTTGTGTTCAGATGATTCATTTTGTTTCTTTTTACAAATACCAAGATATGTTGCGTGACCTTTATTTCCA TGGTGCATATGTTTAAATTTCTGTTTTTTGAAGCTATTTCTGGTTGTTGTATTCTAATTGTCTATTTTTAATGTCAATTC TCTAGTCGGGGTCGGTCTTATGATCGAAGAAGATCTCCTCCTCGTTATTCTCGTTCACCCCGCTACTCCCGATCTCCACC ACCACGCCACAGATCTCGCTCTCGCAGTCGTGACTATTATTCCCCTCCTCCTAAACGCAGGGATTCAAGGTATGTAGTCA CTGGCCAGTAATAATTATTAACAGTTCATTTTTATTGCATGTAATTTTATAAACAATACTATTCCTTTTGATTCAGCTCT TTTTTGGTTTGTATATACGGTGACAAGGAGCTGGTATTGTTAGTTGATTGTAGTTTAGGCCAATGCAATCTGTTCTGCAG CATGTGTTACTTTGTACCATGAACTATGATACAAATGTGATTTGTTCTGGCAAAGAAATAGTGGATGTTGTTTGCGTTTA GGTTTTTATTGATAAGACCTTCTCAGTTCTCAATAACTAGCTTCTCTGGGGGTGGTAAGAGTAATGAATATTACTTTGTT TCCTGGCACTCATATGATACCCTACCTGTTCTGCAGATCTGTGTCACCTGAGGAGAGAAGGTACAGTCGAGAACGATCGT ACACACCACGTAGCAGGGAGAGGTCATACTCACGCTCTCCACCCTATAATGGAGGCTCAAGAAGCCGCAGTCGTAGTCCA GCTAAAGTCGCAGTCCACAGCAGAAGCCCAAGTCCGATCCACGGTGATGTTAGGGAGTCAGCCCGCATTAGGTCCCCTAG TCAGTGAGAATTGAGTAACTTGCAATGGACTACTAGATGTTAGATTTTATTTGAATGTTCAGCAAATTACTTGATATTGT TTGATATAAACATTGCATCAGTTTTTAGTTGGATGTCTTTGAATTTCATCTCTATTTCCATCTAGTTTTAGTTGTGGACA TTGGTATGGAATTTGCTGCTATCTTTATGTCTTGGTGTTTGTCTTTTAACAATGGAAGAGTAGACTTAAATTGCTCTGTT GTCTGAAAATTACTCTGTAATTGCATTTCTATACTTGTGTAGACTGAAGAGCTGTGAATGGGATTAAAATGACGGGTAAA AAATATGCTTAGTTCCCTGTAAAATAGTGTTAATATTTGACTTTAGTTCTTGATTTTTTA
CDS sequence (LotjaGi6g1v0035600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGGAAGGAGTTACACTCCATCTCCGCCACCACCACCGCCACGCGGTTACGGCAGAAGAGGCGGCGGTGGCGGAGG GAGAAGCCCCAGCCCTAGAGGCGGAGGCCGCTATGGCCCCCGCCCTCGAGATCTCCCTACCAGCCTTCTCGTTCGTAACC TTCGCCATGATTGCAGGCCTGAAGATCTTCGCAGACCATTTGGTCAATTCGGTCCTCTTAAGGACATTTACCTGCCTAAG GATTACTACACTGGACAACCCCGCGGTTTCGGTTTTGTCCAGTTTGTAGATCCTGCTGATGCCGCTGATGCAAAGTATCA TATGGATGGTCAAATTCTTCTCGGTCGTGAGCTGACTGTTGTCTTTGCTGAGGAAAACAGAAAGAAGCCAACTGAGATGA GGCATAGAGAGAGAAGTCGGGGTCGGTCTTATGATCGAAGAAGATCTCCTCCTCGTTATTCTCGTTCACCCCGCTACTCC CGATCTCCACCACCACGCCACAGATCTCGCTCTCGCAGTCGTGACTATTATTCCCCTCCTCCTAAACGCAGGGATTCAAG ATCTGTGTCACCTGAGGAGAGAAGGTACAGTCGAGAACGATCGTACACACCACGTAGCAGGGAGAGGTCATACTCACGCT CTCCACCCTATAATGGAGGCTCAAGAAGCCGCAGTCGTAGTCCAGCTAAAGTCGCAGTCCACAGCAGAAGCCCAAGTCCG ATCCACGGTGATGTTAGGGAGTCAGCCCGCATTAGGTCCCCTAGTCAGTGA
Protein sequence (LotjaGi6g1v0035600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGRSYTPSPPPPPPRGYGRRGGGGGGRSPSPRGGGRYGPRPRDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPK DYYTGQPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRHRERSRGRSYDRRRSPPRYSRSPRYS RSPPPRHRSRSRSRDYYSPPPKRRDSRSVSPEERRYSRERSYTPRSRERSYSRSPPYNGGSRSRSRSPAKVAVHSRSPSP IHGDVRESARIRSPSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 46 | 46 | - | – | |
MobiDBLite | 1 | 18 | 18 | - | – | |
PANTHER | 21 | 223 | 203 | 5.2E-88 | – | |
PANTHER | 21 | 223 | 203 | 5.2E-88 | – | |
Gene3D | 41 | 156 | 116 | 3.0E-27 | ||
ProSiteProfiles | 47 | 125 | 79 | 17.387 | ||
SUPERFAMILY | 47 | 152 | 106 | 9.0E-29 | ||
SMART | 48 | 121 | 74 | 1.7E-21 | ||
Pfam | 49 | 118 | 70 | 6.0E-20 | ||
MobiDBLite | 125 | 152 | 28 | - | – | |
MobiDBLite | 125 | 256 | 132 | - | – | |
MobiDBLite | 169 | 207 | 39 | - | – | |
MobiDBLite | 208 | 232 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0035600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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