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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0039400 |
| Transcript ID | LotjaGi6g1v0039400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small subunit processome component 20 like; TAIR: AT4G30990.1 ARM repeat superfamily protein; Swiss-Prot: sp|O75691|UTP20_HUMAN Small subunit processome component 20 homolog; TrEMBL-Plants: tr|A0A151SQB7|A0A151SQB7_CAJCA U3 small nucleolar RNA-associated protein 20; Found in the gene: LotjaGi6g1v0039400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7621057..7625204) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACTCCGTCACACGCTCAAGCTGTCAAGTCTCTCAACAAATCCCCTGGTCGCCGTCGCTTTGTTGTAAGCTCAAC CGATTTATGCTATATAGCAACACTGCTTAAACCCTAAACCCTGTTTATTGTATTAATTGCTTTTTTATTTAATTGAATGT TGTGCAGTTTAAGTCATTCTCTGAGAGAGTTGATGATATCGATATCGACGTCTATCGAAGCCTCCACAAGCTCAAACCTG AGCCATCTGAGGGTTCCTCTTTTTTCAGAGACTGCCTTATTGAATGGAGGGTATGAATTTTTATTGTGCTCTGCTGCGCG CTGCAATTGTATATTTGTATGTAATTGATTCTCATAGGATAAAAGTTGTGTGCCGCTCGCTCCCTTTGTAACAAAAGAAA AAAAGTGCTAACTATTAGCTTGCTTTTTATTAGTATGTATGTACAAGTGAGAGAAATTGACTGTTTTATGAGAAAAAGGA TCATACACCGACGGTGTTTACACCGTCAACCAATCAGATTTCAAGGATGTGCCACATCAATTAATTAATGAAATTAAATA AAAAGAGAGATTTTCTCACATCCTTGAAATCTGATTGGTTGACAGTGTAAAAAATCTTTACACCGTCAGTGTACAGACAT TAAACATTCAGTTACGAGAGTAGGGAAATTATATGTATGCAGATTATGATGGAGTTAGTTATGCAACTGCCTAGCTAACT TCTAACATACTAACTAATAACTAACTGAGCTAGGATCCACTACAACTGTCTGTAGAAAACTACTTCATCTCCATCTTTGT AGCCCCAGGTATTAATTATTTTCTGTAATTGTCAAAATCCAGGAATTGAACACCGCAGAGGATTTCATCTCACTGTATGA AGAAATTATGCCTTGGACACAATCATTGCCCCTGGTGCTGTTGCACAAGGAAACATTGATATCAATGCTTCTTTCTAGGT TGCACATGGAAGCAAGGCTATCCCTTGACGCGATTCTCAGGTATGCTATTATTTTAAGTATTGTTTTGTTTTGCTTGATT ATGGAATTTAGTGTGACGTGTTACATGGCGAATTGTTAATGTTAAATCATATTCTATGCTTTGAAAACCATAACTTGTGT GGACAGAACAAGTATTTTGCCTCCTTGACAATATTGGCACATTCCGACTTTTCTGTCAGGGCTAGTTATTGTTTGTAACT TCATATGCAGACTGTGATTGAATACCGTTGTGAAAATCTGTTGAGCTTTAGTAGTAATAGTGTCCAAATTTGGCCATAGG AGTATGCTTCTCTAATTAGAGTTCTATATAATTGATGGGTGGTTGTTTATCTTTTTCTTTCTTTCAGTATTTATTTTTGG CTTTCTACTTTTTTGCAACTGTTGCAAATGAATCTCAAGGCTCCCTTTTATTTACAGGTTAATTGCAGCTTTAGCCAGAG ATCTCCTAGAGGAATTTGTTCCGTAAGTTGCTTCTCACTTTTGCTAGATGTTGCCATGTTGGCTCTTTTGGTTTCCATTT ATTTCATTTGTCAAATTTCTTCCAAGCTTAATTTGATGGTTTTCATATGGGTATGTACATGGGTTTTGCTAGGCTGTTTC CGAGAATTGTTGATGCTTTAGTATCTCTTCTAGAAAGTGGTGCTGATAGGGAGCCAGATATCATTGAGCAGGTATAACCT ATCATATTGGCATGTTAGGAGATGTTCTTTTCTCATTTGGCTGTTTCCATTTTTCAATGTGGATAATGAAAATGTTTGTT TTTTTGCAGATCTTCACATCATGGTCATATATTATGATGTATCTGCAGAAATATTTAGTACACAACCCATCAGATGTGCT CAAGTGAGTAGTGGAGTCTGGATTTTGTATTTTTTTTCCCACATGAAGTTAATTATTGTGCAAACCGTGAATTGGATGTG TATGGCTTTACCTGTTCCTCTTTGTTAAATCTCAAAGATTAATTTGCAGATAAGGACTTACTTTTTACACTAAGTTTATC TCATTTGTTGGGTGAGGTAGCTGACAACAATCTTCCCTTATAATTCTTGATATGAGCAGCCTGCAAACCATAATTTCTAT AAAACAAAATGAGGCTTTCATTTAAGTTTTTTTCATATCAAGGTAGTGAAATATTAATGTAGTCCAATGGGACACAGGAA ACATGAAATTGTTTAATTTAAGCCTTCAGAGTCATAAAATGACAACAAAGTCTGAGAATTGAATGAAAAACAAAATTAAA ATAACATCACTGGGGGATGGTAGTGTAAAACGATGCTGGCCTACCAAGAAATGTGCAGGTATGTAAACCTTACAGGCAAT GTTAGCAAAATCTATAGCAAAATCGTAAAATCCTAAGATTTTACGATTTTGCAGCACTGTTCCGATTCAAAACGCATGCA AAATCTTTTTTTGGTGGAATCTCGTAGAATCTTAGATTTTAATCGTAAAATCGTAAAATCCTATTGAATCTCACGATTCT AGTATTTTTTTAATTTTTGAAGCTGGTTCCTAAAATTGGGGAAACTAGAGAGTTTTTTGACTTTGTGGAAAAAACAACCC ACCACCCAGCATTTAGGGGATTTCGAAATTGAAGCTCTAATTGATTGTAGTTGCCAAATTTGAATGGTTAATTGATAAGA ATTAATAACTGATCATATATTTCGAAAAATCAACCCATGTGACCCAACCTTCATGCCTCTAATTGCCTATTTAATTCACT CATAGTAGAGTGAATTGAATCACGCATTCAGGCTCTGTTTTCTGTAGTCTCTATCTAGGTCTCTTCCGCTTATGTTTTCT CTTCATTCTTCAACATCTTTGTTTTCCTTCATTCTTCAACGTCTTTGTTTCATCTTTTAATTTTATGTTCTAGTACTCTT ATGATTTTGGATTGAGATTATGACTTATATGGATGTTAATCTGATGAATTTTTATTCCAATTTTTGTTAAATGATGTGAC TTACAAGATATCAATGCTATTTTTTTGTTTTTCTATTTATGGTAGAATCTTACGATTCAATTTACGATTATACAATTATA CGATTTTGAACCCCCTCTCCGATTCTACGTAGAATCTAGCTTTTCACAACATTGCTTACAGGACTTGGACCTTGAAATAT AATGTTAGTAAGTGTCAAAATAAGTATGGAATGATGGTTCTGACCTAGTAGCGGGTTTTTTCTGGAGATGATTCAAGAAA GCTTGAAGAAGGGAAGAGAGAATGGGGAAGGGATTTTCTATCAAGGGATGTTGAACCCTTTACCTAAAAACTTGCTAGCG AATTTCCTAACCAAATGAGCTAGACTCACTAGATAACTGATTGTGTATGTTTTTGCCAACTTTGTGGTACTGAATTATGA GTTTGTTCTAATTTTGAAGTTGTTTTTCTTGACTTTGATTCTTCAAGGGTCACAGCGAAATTGAGGTATTACAAAAAGGA ATATGTTCAACAATTCATGGCAGAGGCTATGTCATTTGTTCTGAGAAATGCCCCGGATGAGCAGCTCAAAAGAGGTAATG GTTGTGGCTATGTATTTCCCCTCTTCTATCTTGTCTTTTATACTTTTGTCAATTTCACTAAAATTCTAGGACTTGTGGAA TAAATTGCTTCTGGGTTTAATATTTGTTCTTACTTCGCTCTGAAATAATGCTTTTATTTGCTTGGGTCTCTGCAAAAGTT CTAATGTTGTTTCATGGGACAGGAATTAAAAGAGTCTTTGCTGAGGCAGCAAAGAAGCCATCTCCATACCGAGAGTATGG TGTTGAAGCATTGCTTTATAATATTATGAAAGGTTACTCATCAAGATTTCATTCAAAAGCAGAGCGGGTATTGCAAATAT TGACAAGTGAAGCAATTTATCCTTTTGATGATAAAGTTGACCAAGGCAAGTCTGTTTGCTAGTTAAAAAAATTCATTTTT GATTCATTTTATTTCTCAAGATTTTGATCATTGGCTGAAATGCTAATTGTGTGATTGTTGCTCCACCTATACTTGGTATT AGTAATATATAAAGATGAAATGTTTTTTAGAGTCTAAAGAGAGTTGAGAATAAACCTAATGAGTTTTCTGTTATAGAATA TGTGGGTATGGACATCATAAATATATAGATAGCATGCAGCTGTGGGTTAGAATGACTGACCCTAACTA
CDS sequence (LotjaGi6g1v0039400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACTCCGTCACACGCTCAAGCTGTCAAGTCTCTCAACAAATCCCCTGGTCGCCGTCGCTTTGTTTTTAAGTCATT CTCTGAGAGAGTTGATGATATCGATATCGACGTCTATCGAAGCCTCCACAAGCTCAAACCTGAGCCATCTGAGGGTTCCT CTTTTTTCAGAGACTGCCTTATTGAATGGAGGGAATTGAACACCGCAGAGGATTTCATCTCACTGTATGAAGAAATTATG CCTTGGACACAATCATTGCCCCTGGTGCTGTTGCACAAGGAAACATTGATATCAATGCTTCTTTCTAGGTTGCACATGGA AGCAAGGCTATCCCTTGACGCGATTCTCAGGTTAATTGCAGCTTTAGCCAGAGATCTCCTAGAGGAATTTGTTCCGCTGT TTCCGAGAATTGTTGATGCTTTAGTATCTCTTCTAGAAAGTGGTGCTGATAGGGAGCCAGATATCATTGAGCAGATCTTC ACATCATGGTCATATATTATGATGTATCTGCAGAAATATTTAGTACACAACCCATCAGATGTGCTCAAGGTCACAGCGAA ATTGAGGTATTACAAAAAGGAATATGTTCAACAATTCATGGCAGAGGCTATGTCATTTGTTCTGAGAAATGCCCCGGATG AGCAGCTCAAAAGAGGAATTAAAAGAGTCTTTGCTGAGGCAGCAAAGAAGCCATCTCCATACCGAGAGTATGGTGTTGAA GCATTGCTTTATAATATTATGAAAGGTTACTCATCAAGATTTCATTCAAAAGCAGAGCGGGTATTGCAAATATTGACAAG TGAAGCAATTTATCCTTTTGATGATAAAGTTGACCAAGGCAAATAG
Protein sequence (LotjaGi6g1v0039400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPSHAQAVKSLNKSPGRRRFVFKSFSERVDDIDIDVYRSLHKLKPEPSEGSSFFRDCLIEWRELNTAEDFISLYEEIM PWTQSLPLVLLHKETLISMLLSRLHMEARLSLDAILRLIAALARDLLEEFVPLFPRIVDALVSLLESGADREPDIIEQIF TSWSYIMMYLQKYLVHNPSDVLKVTAKLRYYKKEYVQQFMAEAMSFVLRNAPDEQLKRGIKRVFAEAAKKPSPYREYGVE ALLYNIMKGYSSRFHSKAERVLQILTSEAIYPFDDKVDQGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 270 | 270 | 1.1E-102 | – | |
| SUPERFAMILY | 91 | 267 | 177 | 1.15E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0039400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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