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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0040400 |
| Transcript ID | LotjaGi6g1v0040400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT4G13850.1 glycine-rich RNA-binding protein 2; Swiss-Prot: sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial; TrEMBL-Plants: tr|I3T3M6|I3T3M6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0040400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7825627..7829278) extracted from Lotus japonicus Gifu genome v1.2.
TGGAACTCATTTCGGTGGCTTATAACGTCGAGTGTGATATTCGAGCTTAAACCCTAGCCGCTTCTTCACTCTCTCTTCTG CTAGGTTTAAGGTACACCATTTCTCTCTTCTGCAATCTTCTAGTTTCTGTTATTGAAGATCGCTTTTGATTTTATGCATT CTTCTCTGTATGTTTTTATACTTTGTTGTTCGTTTGAATTTACCCTAATTTTTGTTGATTTGTGGTTTGATTAGCCATGG CTTCCTTTGTGCCTTTTAGGGTTTCTGGGTTTTCATTTCTTTGTTATTCCGTTAGATATCATGATTGTAAATCTTGTTAT TTCAAACGTGTGTTGATGTTTTGTGATCTGTTAGTTTTGTTTTGTTTTTTCTGAGGTTTATGTGGCTGGGTCAGTGACAG GGGAAATGATGCTTTGATAATTATTTGTTCCTCTGTTGTGGCTGATGATTTTGTTTTTACGCTGTTCCTGTTTTTTTAAT GTTTTTCTGATTGCCATTTTTATGTGTTTTCTGATAAATACTGGTTGATGCTAGTTGTAAGCTATTGGGTTTTTTCTGGG TTGTACACTTTTGCGTCAGTGTTAAGGGAAAGATGATGCTATGTGACAATTATGTGTTCTATGTTAAAGTTGCTGATTCC AATGTTATGATTTTTTTGTCATCTGCCATAATTTTTGTGTTTTCTATGTCTGCCTAGTGGAGTTGAAAATGCCTCAATTT GTTTTTGGTTTTTCCATGTGTCTTGAACTAAGTTGATTTTATAAGCATGTCATGGTGATTTATTTTCATTCTTAGTGATT GTGATAGATACTGATGTTGTTCTTGGTATCAGGTTCCTGCAACAGTCATAATGGCATTTTTGAACAAGGTTGGAAACGTT TTGAGGCAGGGTGCTGCTCAGAGAAGCCAAGCACCTGTGGCATCCATGCTTAATTACATTCGCTGCATGTCTTCAAGCAA GCTTTTCATTGGAGGTATTCACTTTGACTTTTGTTTACAAGGTAGTTGTTGTTGGATACAAACCACATGTCGACACTGAC TTTCTTTTTTGTTTCATGATTTGGCTTTTGCTTCTTTAGGCCTTTCTTATGGAGTTGATGATAAGTCTCTTGAGGATGCA TTTTCAAGCTTTGGAACGGTTGCAGAGGGTGAGTTCGGCTTGTGCTATATTGTAGTTATGCGGTTTAATCTTAGACCCCT GTTTGCTTCATTCTATCACATGTTATCCTACAAAATAGATCTTATGTTCAGTTTTAAAACTAATGTTTTCTGTTTTTATT TTAGTTCTTAAAAACGCAGGGCATTTGACTTTGTAAACTATTTTGTGTGATTAGTTTTTTCCCTCTTCAAAAACTGGTTT GAAAAAATTAATATTGAGTGTAGTTTTTAAATTGTTTTATTTGAGAAGTGAATCTTTCTCAGAAATTCTCCTGGATATGA TTCTTATGACCATAGCAGGCATGACATCTTGATCTCACTGTCAGTTATGAAAATATACTTGGAACTGATCCATTCATGTG AATATAAATCTAGGTTTTACTATTTTAAAACTGGAATAAGCATTTAAAGAGGTGGGTGGTGAGATTTCATGCCTTCACCC AAAGAAGACTTCATGGCCATGTTTTAGTTTTGATATACTAATGGTTGTGGCTCTGTTTCACAGCAAGGGTTATCGTTGAT AGAGATACTGGAAGATCAAGGGGATTTGGATTTGTCAGCTTTGACAGTGAGGAGTCAGCATCTTCTGCACTATCTTCTAT GGATGGACAGGTTGGACCCCTTTCTGTTTACATTGATTGAACTTCTTTATAATCAGTTCTAGTTGATTGACACCCTTTAA TTTGTTAGGATCTTAATGGGCGAAACATTCGCGTGTCCTATGCAAATGATAGACCTGCTGGACCTCGGGGTGGTGGCAAT CATGGTACTGGTGGCGGTTATGGTACTGGTGGCGGTTATGGTGATCGTAATTCCGGAGGTGGTTGGTGATCCAATCATTT TAAACCATTATATGTCTCTTTTTCGTATGTTGAGTTTTTAGTCCTAAAAATCCATTTCAGGATGCTGCTGAAGTGACAAA TTAGTATTTAGTGACATGTTACATTGGTCCTGTTATTTACATTTCTTGGGTTATGTTATTCTGTTAAATTTTATTGAGCA TTTGTTTCGGTATATAATTGTCTTGATGAACGTGTTAATTATCACCCTCAGCTGAAGGGCAGTTGGGTTTTAAAAAATCT TTTTCCAAGGCTCTATCTTGTTTTTAGAATTTATGAACAGCAAAACTAACTGGACCACCCCTCTTCAGCTCTTCTATGAC CAAGACAGTAGATATTATACTACCTAAGGATTATTAACCAAACTATTGAGTGAATTGAATTGAACAGTAGTTTCAGGATT GTTTTTGGAGTATGATTAGTGTGGTTTTCTCTTTACACAACTCTACTGCCCATTGACTTCAGAAATTTTAGTCCCAAAAA CACGGTTTGGGATATGGTGATTTTTTTCATGTGATGGAAGGATCCATTTTTATGGTTTAAGTCAAAAAATTTGTATTTTT TTGGGCATGTTCTCTGTTTCCTTTTTTTTATGTGGTTGCATGTTCTCCTCATACTAGACTCTGGGTTGTGTTACCCTTAA AAATAGATTTGGGTTTCTTGCTTTTCTCTTCAGTGTTCAGCACTTTTTGGTACTAACCAGATATCCATTCCTACTTCAAC ATGTCCAAATATTTTTTGGGCCCCCAAAACTAATTCTTAACTTGCATGTCCAATTTAGTTTCGTGGGCTTGAATCTCAAA ACTAATAAAATAGCGTATTGGTCTTTATGCATGACCCATAGATTTTTTTAACAGGTAATTGTTAGTTGTTAATAATGTTA GTAAATTAGACATCCTCATAGTTCGAATCCTGGACCCTTCACCCTTCAATTTACCCAACCCTTATGTCCCAAGCTCTTGC TACTTGTTCTATCCTTTAAGAACATGACCATAATGATCAAAATTTGTGCTTAAATTCTTCTATTTCTTCATTTATTTCAC CACCAAAGTTTTGAAGCAAATGTAAGTTTGTAACCAGTGTTGTTAAACTTGAACCGGTGACTGACTCGGCTGGGGTACTG GTCAATGAGTCATTGGTTGAACCACTGAGCCATTTGTTGAGCCATTTGTTAAATCGGTTAACTTGATAAAATTAATAAAA TATATAATTAATTCGAAAGCTTATATTTGTTATTACAAAATTGTACTAGAATTACATAAATAAGTGTTAGATAAGTTAAT GATTTTACCATACTTTATAGGGGTGTAATTGGATCGAATTAGTTCGGATTTAGGGTGTTTTGATGTTTGAACCAATCAAA TATGGTCGGTTTAGGTTGGTTTAAATTTAGGGTGTTTAGATGTTTGAACCAATGTTAGTGGTTAGTTGTTAGTAATCAGA GTAAGGAATGAAACCTTGATGAGAAGTACTCATCCCTCATATGGAACAAGAAAAGTTTGAGCTTCTTATGACACATCTCA GCTGGTGCACATGACATCTCATTTTTGCAATACTTTTAAATCATTTTTATCTTATAACATATGTCATTAATATAATGATT TTTATCTTATATACCAAGAAATTATTTAATAAATTGTACAATACTCTCTCTC
CDS sequence (LotjaGi6g1v0040400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTTTTGAACAAGGTTGGAAACGTTTTGAGGCAGGGTGCTGCTCAGAGAAGCCAAGCACCTGTGGCATCCATGCT TAATTACATTCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCTTATGGAGTTGATGATAAGTCTCTTGAGG ATGCATTTTCAAGCTTTGGAACGGTTGCAGAGGCAAGGGTTATCGTTGATAGAGATACTGGAAGATCAAGGGGATTTGGA TTTGTCAGCTTTGACAGTGAGGAGTCAGCATCTTCTGCACTATCTTCTATGGATGGACAGGATCTTAATGGGCGAAACAT TCGCGTGTCCTATGCAAATGATAGACCTGCTGGACCTCGGGGTGGTGGCAATCATGGTACTGGTGGCGGTTATGGTACTG GTGGCGGTTATGGTGATCGTAATTCCGGAGGTGGTTGGTGA
Protein sequence (LotjaGi6g1v0040400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFLNKVGNVLRQGAAQRSQAPVASMLNYIRCMSSSKLFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFG FVSFDSEESASSALSSMDGQDLNGRNIRVSYANDRPAGPRGGGNHGTGGGYGTGGGYGDRNSGGGW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 10 | 132 | 123 | 1.2E-32 | ||
| PANTHER | 17 | 145 | 129 | 4.9E-46 | – | |
| PANTHER | 17 | 145 | 129 | 4.9E-46 | – | |
| SUPERFAMILY | 33 | 144 | 112 | 6.72E-36 | ||
| ProSiteProfiles | 36 | 114 | 79 | 22.333 | ||
| SMART | 37 | 110 | 74 | 4.0E-29 | ||
| Pfam | 38 | 108 | 71 | 3.6E-23 | ||
| MobiDBLite | 110 | 146 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0040400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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