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LotjaGi6g1v0041600.2

Overview

Field	Value
Gene ID	LotjaGi6g1v0041600
Transcript ID	LotjaGi6g1v0041600.2
Related isoforms 2	LotjaGi6g1v0041600.1 LotjaGi6g1v0041600.3
Lotus japonicus genome version	Gifu v1.2
Description	Selenium binding protein; TAIR: AT4G14030.1 selenium-binding protein 1; Swiss-Prot: sp\|O23264\|SEBP1_ARATH Selenium-binding protein 1; TrEMBL-Plants: tr\|Q93VA1\|Q93VA1_LOTJA Selenium binding protein; Found in the gene: LotjaGi6g1v0041600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:7996002..7997794) extracted from Lotus japonicus Gifu genome v1.2.

ATACAGATAAGGTTCCTACATGATCCTGCTAAAGACACCGGTTTTGTTGGGAGTGCATTGTCAAGTAACATGATACGGTT TTTCAAAACCCAAGATGGATCATGGAGCCATGAGGTACTATCAAAGGATATTTAGTGTCCATTCTCTTCTTGATAGTGGT TAGTATTGATACTTCAACAAAGGTATTTCGACCAATAATACTAATAGACTATGCTTGCATTGTAGCTTGCAATACCAGTG AAACCACTGAAAGTGCAAAACTGGATTCTTCCTGAGATGCCTGGGCTTATAACAGATTTTCTGATTTCTCTTGATGACCG GTTTCTGTATTTCGTAAACTGGCTTCACGGGGATATAAGGCAGTATAACATTGAGGACCTTAAGAATCCTGTGCTGACTG GCCAACTATGGGTTGGAGGCCTTATCCAGAAAGGAAGCCCTGTAGCAGCTATAGGAGAAGATGGTAAAACTTGGCAATCT GATGTTCCAGAGATTCAGGTTGGTGCTATTTCACTTTTCAATTTCATATTCCTATTTTCAAACTCATTGCATAACATGTT TGGGTTTAATTAGTTGGATGAATGTAAACAAATTTCTTAACAATTTTTAAGGTTTTGCTTTCAAGAGTGTAGTGAAAATT GAGAAGAGTGAAATGTGACTCTAATTGTTAGTGCAGAGTGCCCATTGCCTTCAAAGAGAAAAATTGTGCTTGGATAATAT TTCATAGCAAAGAATATGGATGAATATAAGGATCCAATTTCAGGCACCGGACTTGAGTCCCACATTAGAAGTATGAGATT TTGGCGTGGGGTTTATTAGGCTTTGGGATCTCCAAATGTAGAGACTAGCTTTTTGCAGAATGTTTCTTCCAATTTTTTTA TCAAATTGTATGAGAGCCTTCAACCAGGTAGTTTCACTTCACCCAGCCTTCAACCAGAAAAGTGTGTTGGGTTTAGCTCT CCAACTAAAAAGACTACTTTTGTGTATTTACTTGGACTTGTACACTATTTTTAATCCATTAAAGAGAGTAAAACTAGACT TGGTATGTTAATATGAAACGGTAGTTGCTTCATGTTCACCTTGTGTAGAAGCATATATTGCTTCACACTTGTTCCAGTTT TTACCTCATGCACACCATATGAATTTCACATTAATGTAGCATGTTCACTTTGTGTTATTTATTCAACTCTTGTGCCATGT TAGATCTATTTTCCCCCAGATAGCACAGTGATGTATTGAATAAACTCATTCACAACTGACTAAACATTCATGTAAATCCA GAATAAGGTCTCACTACTCTGTAGCATGTCATTTCCTCTAGTGCAGTTGAAATACTTGATTTTGTGGCTGCAATTTCAGT TGTAGACTGTAATTTAAAACCACTCTCTCCATGAGTAGAACTAAGTTAACTGGTATCAAATGAACAAAGACAAAAAAGTG GGAAGCCGAAAAAGAATAAGCTTATTTGTGCTCCTCTGTTGCATGTACTGAATTCTTATTATACTTTTCAGGGACAAAAG CTGAGAGGGGGCCCTCAGATGATTCAACTGAGCTTGGATGGGAAGAGGCTGTATGTTACTAACTCACTGTTTAGTGCTTG GGATAAACAATTTTATCCAGGGCTTGTAGAGAAAGGATCCCATATATTGCAGATTGATGTTGACACTGAGAAAGGTGGCC TGAAAATCAACCCCAACTTCTTTGTTGACTTTGGAGCTGAGCCTGATGGTCCTGCCCTTGCCCATGAGATGAGATATCCT GGTGGTGACTGCACTTCAGATATATGGATTTAA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0041600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATACGGTTTTTCAAAACCCAAGATGGATCATGGAGCCATGAGCTTGCAATACCAGTGAAACCACTGAAAGTGCAAAA CTGGATTCTTCCTGAGATGCCTGGGCTTATAACAGATTTTCTGATTTCTCTTGATGACCGGTTTCTGTATTTCGTAAACT GGCTTCACGGGGATATAAGGCAGTATAACATTGAGGACCTTAAGAATCCTGTGCTGACTGGCCAACTATGGGTTGGAGGC CTTATCCAGAAAGGAAGCCCTGTAGCAGCTATAGGAGAAGATGGTAAAACTTGGCAATCTGATGTTCCAGAGATTCAGGG ACAAAAGCTGAGAGGGGGCCCTCAGATGATTCAACTGAGCTTGGATGGGAAGAGGCTGTATGTTACTAACTCACTGTTTA GTGCTTGGGATAAACAATTTTATCCAGGGCTTGTAGAGAAAGGATCCCATATATTGCAGATTGATGTTGACACTGAGAAA GGTGGCCTGAAAATCAACCCCAACTTCTTTGTTGACTTTGGAGCTGAGCCTGATGGTCCTGCCCTTGCCCATGAGATGAG ATATCCTGGTGGTGACTGCACTTCAGATATATGGATTTAA

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Protein sequence (LotjaGi6g1v0041600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIRFFKTQDGSWSHELAIPVKPLKVQNWILPEMPGLITDFLISLDDRFLYFVNWLHGDIRQYNIEDLKNPVLTGQLWVGG LIQKGSPVAAIGEDGKTWQSDVPEIQGQKLRGGPQMIQLSLDGKRLYVTNSLFSAWDKQFYPGLVEKGSHILQIDVDTEK GGLKINPNFFVDFGAEPDGPALAHEMRYPGGDCTSDIWI

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR23300:SF11 View details on PTHR23300:SF11 Search for proteins/transripts with this domain View external data on PTHR23300:SF11	1	199	199	4.7E-120	–
PANTHER	PTHR23300 View details on PTHR23300 Search for proteins/transripts with this domain View external data on PTHR23300	1	199	199	4.7E-120	IPR008826 Show description in modal box View details on IPR008826 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05694 View details on PF05694 Search for proteins/transripts with this domain View external data on PF05694	1	199	199	2.1E-86	IPR008826 Show description in modal box View details on IPR008826 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF75011 View details on SSF75011 Search for proteins/transripts with this domain View external data on SSF75011	2	131	130	6.15E-10	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008430 View details of GO:0008430 AmiGO InterPro QuickGO	Molecular function	Selenium binding	Interacting selectively and non-covalently with selenium (Se).	Subterm of View details of GO:0005488

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0041600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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