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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0050600 |
| Transcript ID | LotjaGi6g1v0050600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oxidative stress 3, putative isoform 1; TAIR: AT5G56550.1 oxidative stress 3; Swiss-Prot: sp|Q73L97|RLME_TREDE Ribosomal RNA large subunit methyltransferase E; TrEMBL-Plants: tr|C6SY88|C6SY88_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0050600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9071347..9074132) extracted from Lotus japonicus Gifu genome v1.2.
CTTACTATGACTATTTCTTTCCAAGGAAGAATATTATCAACAAACAATAAAGTAATACATGATTATTAAAAAACACGTTT TAATCTTATCCACCACATCATACCTTTTCCTTCTTCGTATAAATATTCTAACACCTTCCATTCCATTTATATGTGTTCAT TCTATAAGTGCTACCCAGATATAAATTGTTACGTGTGGTTGATTGAAAATTGAAGAAAAACACATAGTGTTATCTGAAGA ACAGATAAGAGAATGGAGCAGAAGTGTGATATTGTTGGTTCTTTTTCTTTCTCTTCATCTTCATCCTCTGGAATTTCAAG TGGCTCATCATCATCAATGGAGTCTGATTCTTTTGATGAAGTAACCTCCCCTGCATCACCATCTTCTTCCTCTTCCTCTA CCACTGATCTGCTTGCATCTGACCCATTGAGTGACATGTCTTCTCTGCTTCAACAACTTCCCATGAAGTAAGCATCTTTT TCTTGTGGGTTTTTTTTTTTTGTCATTTCTTTTGAGATATTTATTTCTAGGGTTTCATTTTTTTTCTCCTGAATTTGCTA AAGTTTGTGTCTTTTTTGATGATCTTACAGGAGAGGGCTTTCAAAATTCTACCAGGGGAAGTCACAGTCTTTCACTTCAT TAGCAAAAGTGGAAAGCTTGGAGGATCTTGCTAAGGCAGAGAACCCTCAGAACAAGAGATTGAAATCATGCAAAAGCTAT GGAGGAGGGTTGAGTCCAAGTGCCATGTCAAGGCATGTATCTAAGAGGGGTTCATGTTTTTCTTCCATGAGTGCAAGAAG GAGCAGTGGTAACTTCATGGGTAGTAGGCCACCAATCCCTCCTCATAGATCTACCAGCACAACAACTATACCTAATCAAA GGGTGTTGTTTGCTTGAGAGGGATCATTTGATTTTAAATTTTTTGTTGAGTTGAGTTTTTCTTTTATTATTTGCGGAGTA TCATGCGATCTAGATTAAGGTAACATGGATGGATGCACCTAATTAGTCTCAATTTTCCCCTACAATTTTGGGATTGTAAT TGGCATGTGCAATTCTGATTGACAAATTTTTGGAAGCGAAAAAGTTTTGGAATTTTTTTTTCATTTGACAATTTTAGAGG TAAATCATAAATGTTGTGTATCATAATTTGAAATGACTCAGCATCATGATCTCCCATAGGCAAAATCTGAATCAGCATAC CGTCACCCAAAAGACTCGGATCAGAATAACCACATGTGCCAAATGATTTTGGTCAAAGAGAGATTAGATTAAGCATAAAG TCAAACAAGACTTATAAATCAAAGGGTAATTAAGTGAGGGATGCCTATGCGTGGCTCAACGTTTAGCACCGGAATGTTTC TGAGGAGAGGAAGTTGGGTTGGATTTGAAAAACTGAAGATGCTTGAGAAAGTTAAAACATTTGTTTGACTTATTATACAT GAATCAATCCAGGTGAATGCGCATAGGTTTAAGTGTAAAATGGCCCCTTCTGCTTCTTGTGGGAGGGAATAAAAATTGGT GTACACTATTTGGGTGTAGACCACTACAGAGATAAGAAGATATGAGAGATAAGTGATAATTGTGATAAATGATGTGATGT GACCGGAAGAAAGAGATAGAGAAAAAAAAGGTGTCCCAAGGTGTCTGCACTATTTGGTGGTCTATGAATCATTACTGTGC GCGAGGTGCTCTAATTTGGTTGTAAACGATATCCATTATCTATGGGATTGTCCACATTTGAGAGAACTCTGATTGAGAAT GAGAGTGTTGACTTGGGCGAATTTACAGCACTCTGACTTGAAAGTTTGGGTTAGCACGCTAGCTCGCAACATGCATTATT TGAACTTCGTTGCTTGCATTTGGGGAGTGGCAAAATTGCGTAATAATATGGTGTTCGAGACTCAGACTTGACCTTTACAA ATTGCCTGGTGCAACATGCCAACATCTGCCATGTTCACAGTGATTTTGCTTGTTATATGAGGTCGTAGAGGCAGGTCTTG GATGGTGGTCTTTTGAGTCACATTTGGCTTCCCCCGCCGGCGGACTTTGTGAAGCTCAATTCGGATGGCGGCTTCTGTGA AGAGGTTGATACTATGGGTGGTGAGGGCCTTATTCTTGATGGTTGTGGTAAGTGGCTATTTGGCTTCCTTAGCTTCATAG AGGCTGGGATCCTTTTCTTGCTGAAGTCTATGCTCTTTGTGATGGACTGACCCTTGCTTGAAACTGCAAGTTTAAGAAGG TGGTTTGTGAGGTGGATTGTGCAAATCTAATTACTACATTGGAGGATGAAAGTATTATGAGATTTTATAGCATACTAGAT GCTTATGAATATGAAACAACTTTTCATGAAGAATTAGATGACCAGTCTGACTCTCATTCACCGTGATAGTAATGATGCGG CAAATTGATTAGCAAAAAACGGTGCTAACTCCCCTTCGTCCGACATTACAGTTGTGGATAGGCCATATGTTGAATTAGAG TTCATTCTGTTTAATGATTCTTTTGTTTCCCTTAGTTTGTTTATTGTTTGTTTTGTTATCTTTTTGAATCACCAAGAAAA GGATTATTATGATTAGGGATAATAATTTTCACCTGCATATGAGGATTCCTACGAGGATTGCCGAATTTGGGAATCCGATC TTGAGAAAATTTTCCTCGTGGGAAGGGGGTGGGGACAAAAATTGTGACACCCGAGCCGATGAGGGCGGAGAGTAGTATAT TGAGCCGATGGGGACAAAAATTATGAGGCACAGATAATGAGCGGCTCCTGGCAAGCTTCTAGGCGG
CDS sequence (LotjaGi6g1v0050600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAGAAGTGTGATATTGTTGGTTCTTTTTCTTTCTCTTCATCTTCATCCTCTGGAATTTCAAGTGGCTCATCATC ATCAATGGAGTCTGATTCTTTTGATGAAGTAACCTCCCCTGCATCACCATCTTCTTCCTCTTCCTCTACCACTGATCTGC TTGCATCTGACCCATTGAGTGACATGTCTTCTCTGCTTCAACAACTTCCCATGAAGAGAGGGCTTTCAAAATTCTACCAG GGGAAGTCACAGTCTTTCACTTCATTAGCAAAAGTGGAAAGCTTGGAGGATCTTGCTAAGGCAGAGAACCCTCAGAACAA GAGATTGAAATCATGCAAAAGCTATGGAGGAGGGTTGAGTCCAAGTGCCATGTCAAGGCATGTATCTAAGAGGGGTTCAT GTTTTTCTTCCATGAGTGCAAGAAGGAGCAGTGGTAACTTCATGGGTAGTAGGCCACCAATCCCTCCTCATAGATCTACC AGCACAACAACTATACCTAATCAAAGGGTGTTGTTTGCTTGA
Protein sequence (LotjaGi6g1v0050600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQKCDIVGSFSFSSSSSSGISSGSSSSMESDSFDEVTSPASPSSSSSSTTDLLASDPLSDMSSLLQQLPMKRGLSKFYQ GKSQSFTSLAKVESLEDLAKAENPQNKRLKSCKSYGGGLSPSAMSRHVSKRGSCFSSMSARRSSGNFMGSRPPIPPHRST STTTIPNQRVLFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 59 | 59 | - | – | |
| MobiDBLite | 8 | 59 | 52 | - | – | |
| PANTHER | 9 | 153 | 145 | 6.7E-42 | – | |
| PANTHER | 9 | 153 | 145 | 6.7E-42 | – | |
| MobiDBLite | 108 | 166 | 59 | - | – | |
| MobiDBLite | 126 | 146 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0050600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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