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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0052000 |
| Transcript ID | LotjaGi6g1v0052000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|A0A072UXE2|A0A072UXE2_MEDTR MADS-box transcription factor family protein; Found in the gene: LotjaGi6g1v0052000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9278064..9278995) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGACATTCTTTCTTGCTCTAATTTCTTCGTCTTTTCCAGATCCCTACCATGACCAGAAAGAAGGTGAAACTTGTGTT CATGATCAATCTTTTGAAGAGGAAGGCATCATTGGAGAAAAGGAAAAAAGGTTAGAGATTATTATGTTTGCTTTAATTTA TATAGACCATGAAATTAACCTTGTTATTTTACAATTTATAAAAAATTTAGTTACTCTTTTCTTACATTTTCAAGATTCCC TTTTTTTGACTCTTAATGTGTGTCTTGGTAGGTATTAAGAAAAAGATTGATGAAATTACCACCCTTTGTGGGATTGAAGC ATGTGTCATATTCTTTAGTCCAAAGGATCCTCAGCCAGAAGTTTTTCCAACCTCATTGGAAGCACATAAGGTGTTATCTA GGTTCAAGGAAACTCTTGAGTATCAAAAAAATATGTTGTATCAGGAGAGCTTCTTGAAGGAAAAGATTTCAATAGCGCAA GAGAAACTAACGAGACAACTGATTGAAAATAGGAAGAAAGAGATTGAACTTCGCATGTTTGAGTACCTGAGTGCTGGTCA AATTTTTGGTAATGTTAGCATGACTGATCTCAATGATATATCATGCTTGATTGATCAAAAATTGAAGGAAACTGAACAAA AGATCAATCAGATCCAAGCTGGAGAAGAGTCTGTGACTGGAGCAGAAATTGCGAGTGGAGGTCTTGTGAATGGAGCTTGA TTAATTCGTCCTAGGTATTGGTTTATTGTTGGGAAGGCGTTAACTTGTGCTGGGAGTGTATGGTTCCATGTAATTGATGC TTTTGGGATGTTTTTCTTGGGTTGTAACATTTTGGTTGAGTACTCTTTTTCCTTCATTAGGTTTTTTTTCCATTGGGTTT TTTCTAGTAAGGTTTTGATGGAGCTCATTCTTTGGTTGGCCATCCAAACCGG
CDS sequence (LotjaGi6g1v0052000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAGAAAGAAGGTGAAACTTGTGTTCATGATCAATCTTTTGAAGAGGAAGGCATCATTGGAGAAAAGGAAAAAAGG TATTAAGAAAAAGATTGATGAAATTACCACCCTTTGTGGGATTGAAGCATGTGTCATATTCTTTAGTCCAAAGGATCCTC AGCCAGAAGTTTTTCCAACCTCATTGGAAGCACATAAGGTGTTATCTAGGTTCAAGGAAACTCTTGAGTATCAAAAAAAT ATGTTGTATCAGGAGAGCTTCTTGAAGGAAAAGATTTCAATAGCGCAAGAGAAACTAACGAGACAACTGATTGAAAATAG GAAGAAAGAGATTGAACTTCGCATGTTTGAGTACCTGAGTGCTGGTCAAATTTTTGGTAATGTTAGCATGACTGATCTCA ATGATATATCATGCTTGATTGATCAAAAATTGAAGGAAACTGAACAAAAGATCAATCAGATCCAAGCTGGAGAAGAGTCT GTGACTGGAGCAGAAATTGCGAGTGGAGGTCTTGTGAATGGAGCTTGA
Protein sequence (LotjaGi6g1v0052000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRKKVKLVFMINLLKRKASLEKRKKGIKKKIDEITTLCGIEACVIFFSPKDPQPEVFPTSLEAHKVLSRFKETLEYQKN MLYQESFLKEKISIAQEKLTRQLIENRKKEIELRMFEYLSAGQIFGNVSMTDLNDISCLIDQKLKETEQKINQIQAGEES VTGAEIASGGLVNGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 78 | 78 | 2.62E-17 | ||
| ProSiteProfiles | 1 | 51 | 51 | 14.045 | ||
| SMART | 1 | 60 | 60 | 4.1E-13 | ||
| PRINTS | 3 | 23 | 21 | 7.9E-6 | ||
| PANTHER | 3 | 153 | 151 | 4.8E-43 | – | |
| PANTHER | 3 | 153 | 151 | 4.8E-43 | – | |
| Coils | 11 | 38 | 28 | - | – | |
| Gene3D | 15 | 94 | 80 | 1.8E-9 | ||
| Pfam | 16 | 51 | 36 | 1.1E-11 | ||
| PRINTS | 23 | 38 | 16 | 7.9E-6 | ||
| PRINTS | 38 | 59 | 22 | 7.9E-6 | ||
| Coils | 94 | 114 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0052000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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