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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0053200 |
| Transcript ID | LotjaGi6g1v0053200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TPX2 (Targeting protein for Xklp2) family protein; TAIR: AT5G37478.1 TPX2 (targeting protein for Xklp2) protein family; Swiss-Prot: sp|F4I2H7|TPX2_ARATH Protein TPX2; TrEMBL-Plants: tr|K7MPV9|K7MPV9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0053200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9484954..9488073) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATTTCAGACAGTCACCAACCTCCAAACTTCATCTTTTCCCACTCTTTATATAGTCCCACTCAGCTCAATAACAGC TACACACACATCACACTTAATTAAACATGGAGAGAGCAAACAAATCTGCTTTGAAGGTTGGGGTGCTTATAGTTTCTTTA ACTGTTGTTTTGTTCTGTTCCCTCTCAGTGGTAGAATAGTGTATTAGCGTGTACTAAATTTTCACTTTTTTTGCATTTCT CTTAATTTTCATTGGTGGAAGTTTGTGAAGAACACTTCACACTCTGCAGCTCAATGGAGCAGTGCTAATTCTAGAGGAAT GGTGAGATGTTTAACTTCTTTTTTACCTTCACCTATAATCCTTCAAAAGCCACTCCTTGTTTTGTTTTGTTTTGTTTTGT TGTCACATTAGTTAGTTGCATATAAAAACTGAACTTCAATTCCTCAGAATGGTGGAGGAATATGAGTTTAAAATTTACGT TTTGTATCATTGTATAGGACAAAGATACTTCTTCCTGCACTTGTTTTTAGTTCCATTTCATCTTAAAGGTTAAAACTTCA AAGTTCATTATGAAACTCACAAAATCGCGTCCGAAATATTGATTACTGGCGATGTTATTAAGCACATGTTTGTATACATG GTAGAAAGCTACAATGAAGCTAAAACCACTGTGAACAGCCACAGAAACTAAGTAAAATTACTTCTGTCCATCATAATTTT GGCTCACCATAATTTTTCACCGTGTGTCCAAACATACACTTAAATTACAACTCTTGCATACTTGACTAGATGGGCATACA ACCATTCTTATATGATACAAAAAAAACACACACATATATATAGCAAGTTGGATTACCAACTTGTAGCTTTAATCCATATG CATAAGGATTATTCTTTTGTGTGTGCCTGCCACTACTCATTGTGCCATCATCATTACTGTGTAACACAGGCACACAAATA TGAAATTAATATTTTACATATATAAAATCCATTTAAGACATGCATGCACATTTGTGAGGAGCATGAGTGAACCATTTCAC CTTAACAATATTATCGTTGAAGTCCACCTAACAATTTGTCCATGCAACTTTTCCAATGTTATCATTTCTCAGAATTGACT AAATTTCAAATATGTTAAAAAAACTTGATAAAATATTATACTGCAATAAATGAGAGACTTAAAAAAAAACATCATTAGTG ATTATTTTGGACCACCATACTTTTTCACTGAGATTAGACTCGGGAACAATGCAGTCCTTTTCCATAACTTACATCAAAGA GCATCACCGCACAATGGACCCCATAATGATCACACTAGTACTCTTTGTCTCTTACTTATTTCATTATATTAGAATGTTTT ATCACTCCCCTGTCTGTTTCTTGTCCATTATTCAATACATCATTGATTCTTTAAAAACTCTTTTAGCTTATTATACATGA TTGCCACCTAAATTAGCATAATTGGATGTTTCACAGACAAAAGATGTACTCAAAGACAGGTTCGATGACAAGACCAAGGT AATTAATTTACATGGTGTATAGCAATATCTTCTTTAGAATTTGGTAATGGATTTTTGTTTCTTTAATTCTAGGCTTCACC AAAGTCTCCTCCAAAGTCTCCTCCAAGAGAAAATACTAAACCGCAAGAATTCAAACTCCACACTCAAGAAAGAGCTGTGA AACGTGCAATGTTCAACTATGCAGTAAGAAATGTGAATGATCTGTTTCTGTTTCAGAAATGTCACGTCTTGTGATTAATG AATGTGGTTAATTTTGCATAGGTGACAACAAAATTCTATATCATGGAGCTGCAAAAGAAGCAAGAGGAGAAGTTACAAAA GGTAGTAGGCATATATAATATAATACTCCATCCGTTCCTATTTATCTCTTTAGGAGGAAGAGAAGATTCACACAAATTAA AAAAGCAATTAATTGTGTTGATTTTCATAAAAGTATTATTTGTTTTCCTATATCACCCTTTAGAATGCATTTTATCTTTC TTCATTTATTGTTTCTTTAAGTGCATTTCTTGGAAAAACATCAATTAATGCTCTCTTGAAACTCTAAGTGGACATATATA TAGGAACACAAAATTTTCTTTAAAGTTAACAGTTAATAAGGAACGGAGGGAGTATTAATGAAGTTACATGATTCTAATTA TGAGAATGGAATATTTTAGAGAAAATTAATGAAATTCATTCATGAGCAGATGATTGAAGAGGAAGAGATACGTATGCTGA GGAAGGACATGGTTCCCAGAGCTCAATTGATGCCTTATTTTGATAAACCATTCCTCCCACAAAGGTAAGAACAACAATAT ATATAGGTGAAATTGCATAGGACATATGCATGTTAAGATGGAAAGAAATCTTTAAAGTAGCTACATTTGGAAGCTAGGAG AAGGAAAAAGTCCCTACATGGAATTGGAATTATATCCCACTGAATGAATACCTGCTTGGAAATCCTTCTAGCTATAACTC AATTCTATAGAGAAAATCTTTTGAGTAGCTTTTGGGCGTCAGAATTAAGTCCTAAGAAAAATAAGTTGATCCAAATATGC TATAAGTGACATTTTGTAGAAATTTAGTAATGACATCAGAATAGTTCATTTATGTAGAATTGGGACGTATCAAAAACTTC ATACACTGCTTTAAAAAATATATATCAGTATTTATAATTTGAAGAACTACAATATCAAATTTGACATGCAGGCCAAACAA GACTGTTCCAAGACAATCATGCCTCCACATGATGAGTGGGAAGTGCTGGAGCTGCGCCACTGGAAATGAACTCTACAACT TACACCACTGTGGTGCTCAAGCACTTAAGCCGATTAAGTAAAAGCTCTTTTACAGTTGTGGGACGGAGCCTGCAAAATGT TCTCATCCTTGCATTTCATGCATGTTGTACACTATCCATAGAAGAGAAAGCAGAGTGTTGTACTATACCACCATGTGATA AACTAGCTACAACTTAGGAGGGGAGATTTTCATTGTCACAAATAAAAGATCAATCGAGTTTCTTTTTGGTGTTCTTCGAT TTTGGGATTTTGGATACCATGCCATTGCCTTGTACTTGTACCAATTTTCAAAGAAAAGAATAGAATCATTTTCTTCTATA
CDS sequence (LotjaGi6g1v0053200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGAGCAAACAAATCTGCTTTGAAGTTTGTGAAGAACACTTCACACTCTGCAGCTCAATGGAGCAGTGCTAATTC TAGAGGAATGACAAAAGATGTACTCAAAGACAGGTTCGATGACAAGACCAAGGCTTCACCAAAGTCTCCTCCAAAGTCTC CTCCAAGAGAAAATACTAAACCGCAAGAATTCAAACTCCACACTCAAGAAAGAGCTGTGAAACGTGCAATGTTCAACTAT GCAGTGACAACAAAATTCTATATCATGGAGCTGCAAAAGAAGCAAGAGGAGAAGTTACAAAAGATGATTGAAGAGGAAGA GATACGTATGCTGAGGAAGGACATGGTTCCCAGAGCTCAATTGATGCCTTATTTTGATAAACCATTCCTCCCACAAAGGC CAAACAAGACTGTTCCAAGACAATCATGCCTCCACATGATGAGTGGGAAGTGCTGGAGCTGCGCCACTGGAAATGAACTC TACAACTTACACCACTGTGGTGCTCAAGCACTTAAGCCGATTAAGTAA
Protein sequence (LotjaGi6g1v0053200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERANKSALKFVKNTSHSAAQWSSANSRGMTKDVLKDRFDDKTKASPKSPPKSPPRENTKPQEFKLHTQERAVKRAMFNY AVTTKFYIMELQKKQEEKLQKMIEEEEIRMLRKDMVPRAQLMPYFDKPFLPQRPNKTVPRQSCLHMMSGKCWSCATGNEL YNLHHCGAQALKPIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 66 | 66 | - | – | |
| MobiDBLite | 9 | 30 | 22 | - | – | |
| MobiDBLite | 31 | 47 | 17 | - | – | |
| PANTHER | 43 | 157 | 115 | 1.6E-48 | – | |
| PANTHER | 43 | 157 | 115 | 1.6E-48 | ||
| Pfam | 66 | 122 | 57 | 9.4E-17 | ||
| Coils | 88 | 114 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Spindle | The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Activation of protein kinase activity | Any process that initiates the activity of an inactive protein kinase. | ||
| Biological process | Regulation of mitotic spindle organization | Any process that modulates the rate, frequency or extent of the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle. |
Expression pattern of LotjaGi6g1v0053200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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