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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0054300 |
| Transcript ID | LotjaGi6g1v0054300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PLATZ transcription factor family protein; TAIR: AT1G31040.1 PLATZ transcription factor family protein; Swiss-Prot: sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808; TrEMBL-Plants: tr|A0A151RBZ4|A0A151RBZ4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0054300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9758493..9761148) extracted from Lotus japonicus Gifu genome v1.2.
GACCCTTTCTCTCACTCTCTCCTTTTTCTCTGTTTATTTTATGTTAGGAAAGTTCTTCCAGTTGAATCTATAATTCTTCT TTGAACATCTTTTCATTCTGAAATAAAATCAAATACTATCATCTCAATTTGAAAGAAGGAAACGATGAGTGCTTCTTCAT CCAAAAAAGTGGACAAGGTATATAATCAGAAAACCTTTCCTGTATATTTATTTTATACAAATCTAGCAGATCATTTATCT TTAGTATTTTGATTATTCTTTTGATATTTTCGCTCTTCTTTCAAAAAAAAAAGGTCAGGTAAATGAAGTATTTTTTTGGT GACAAAATTTCATGTTAGAAAAGTGACTTAGGATGATAAAAAAATTTCTAGATTTTTTCCTCTGTTTATATGCTCATCAA TGAGGTTAATGAAGAAAAAGTAATTTTACTAGAATTGGAATGGTTTCATAGATTAAATATAACAGTTCTTGTGCAAGTAG ATAGAAATTTTTATATATTTGGTATATCTACTTTGATTGTCGTCTTAGGAATTTTTCACATGTTAAAATGCTGCATTTTT CCCTTTAGTTGTGTTTTAATAATGAACATCCTAAAAAAATAATAAATAATGCTTGAAATGAAGGATCTCTAGTTATGTGT TGCTTCATCATAAACTGTTATCATCCTGATCTCTAACATCTAGTCAGTTTTACTCGCTATGTACACATCTCCATATATTT TTACATGGAATAACTTGTTATACTTTTTCTCTTCTTCTCAAGATTAGAAATGATAGTGTACCTTTAATTATTTTTGCTCT TTGTAATGCTATTTTTTGTCTCAATGGTAAACGATAACATCGATAGACAATAAAGTGAGTTTAGATATATTGATGTTAAA TGTAACAAAGTACATTAGCAACCAAAAATCACTAATATTTAAGTAGAAATACCAAATTTTACAGTACACAAAGAAATTAA AGAAAGAAAAAAAATGAAAATGATTAAATTATAGAGGGATAAGTGATGATTCATTTTAATAACTTTTGGTACAAGCTTTA CTGACATGCCATACTTTGTAGGGAGAGCAGGTGAATAAAGTCTGCAAGCCAAAATGGCTTGAGGATTTTTTAAGCAAAAC TTTCTTTGACCCATGCTCAACTCATCAATTAAATAGGAATGAGTTGAACAAGTATTGCGTAGATTGCAAGCTGTCTATTT GTCAACATTGTGCATCATCAGAAACTCATCACCAACACAGGATGCTTAAAATCTACAGACACAGTTACAAAGATGTTGTC TCTCTTGATTCAATTGAAAAGTATATAGACTGCTCACAAATTCAGGTATAACATTCTACCTTGACTTAAAGGTTTTGACT GAAAATTTCATGTGTGTTATCTAAATATACGCAATATAACTTGTGTATATGAATTAGTTTTTTTAAGGTATTATAACTTG CATAAATTCATGTGAGAATTTGAGGGATATCATTATCGCTTTGGTAAGTATTAATTAGATATCTACATTACATTGTGGAG TTGAGTATTTTTTATTCATTTCCCCTTTGGTTGTTTTACTAGGTGATACTTTTTTCATATAAGATGTAACTTACTAGATT TAGCTCATGTGGTTATTGCTCGTACTTTAAGGTTCATTCTATCACCTGACCTAGGAATAATTATGCAACTAAATGAAGCA TGTATGAATATAGAGGTAGCACAAGATATCACTAAATATTTTGCAACTCGTTTAGCTTCTTCTTCATGGACATATTTAAT ATCCTCTTGTAGGGATTTTTTACCACTATATTATTTTATTTTTTTCATGTGTTCTTGCATAATATACTGGCACATAAAAT CATATCTATCGACGACGGTCTCAAAAGTATTTTTCATATCACATCTATAAAAATTCTAATGGAATAAAGTCAAAATATTC CATTTTTTCTAGTTAACCAAACAACTTAGTACAACTCAAATAAAAATTTGGGCCTTTAAAACACGTCAACAATTCTTATT ACATTTTACATATTCTTGAAATAATTGAATATTGGATTTAGAAAGTGAAATTTAGTAACCAAAATCAGCACTATACATTT TTATTTGATTTATCTTTGGTTGCAGCCCTACAAATGCAATTCGCATATGATTATTTCTCTGAAGCCTCTTCCACACTTTG GTTCAGCAAAAAAGAGTGAAGAAACATGCCGCACCTGTAACAGGAAGTTGATGGAGCCTGACTTATATCGTTACTGCTCC ATTTCATGCAAGGTGGTGAAAATTTATGTTTTTCATCTATTTACTCCCTCTTCCATTAAATTGGACTTTGTACTTAGTGT TCTTTGACCTTTTTATCTAAACTTTCTCAGGTTGAAGCTGTTTCAAGGAAGCCTAATGATTCAAATCCTCCATTTATTTT CACTCAGAGTCTTAATCAGGGAAAATATGTGGGAACTGTTAAACCCCCGACGCAGCGTAACAAAAGAAAGGGAACACCCT GCAGAGCTCCTCTCTTCTAAAATATGAAATTTATATAAGGAATACAGTGAGTCTATTTGAAGTTTAGTAATGTAATCCTT GAATATCCTGAATTCTGGTTTTTGTTTTTGGCTTTTGCTTCCTGATTATCATGTGGCACTATATCAAGTTGTTTTACATG ATATTGTAGCTAAGTT
CDS sequence (LotjaGi6g1v0054300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCTTCTTCATCCAAAAAAGTGGACAAGGGAGAGCAGGTGAATAAAGTCTGCAAGCCAAAATGGCTTGAGGATTT TTTAAGCAAAACTTTCTTTGACCCATGCTCAACTCATCAATTAAATAGGAATGAGTTGAACAAGTATTGCGTAGATTGCA AGCTGTCTATTTGTCAACATTGTGCATCATCAGAAACTCATCACCAACACAGGATGCTTAAAATCTACAGACACAGTTAC AAAGATGTTGTCTCTCTTGATTCAATTGAAAAGTATATAGACTGCTCACAAATTCAGCCCTACAAATGCAATTCGCATAT GATTATTTCTCTGAAGCCTCTTCCACACTTTGGTTCAGCAAAAAAGAGTGAAGAAACATGCCGCACCTGTAACAGGAAGT TGATGGAGCCTGACTTATATCGTTACTGCTCCATTTCATGCAAGGTTGAAGCTGTTTCAAGGAAGCCTAATGATTCAAAT CCTCCATTTATTTTCACTCAGAGTCTTAATCAGGGAAAATATGTGGGAACTGTTAAACCCCCGACGCAGCGTAACAAAAG AAAGGGAACACCCTGCAGAGCTCCTCTCTTCTAA
Protein sequence (LotjaGi6g1v0054300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASSSKKVDKGEQVNKVCKPKWLEDFLSKTFFDPCSTHQLNRNELNKYCVDCKLSICQHCASSETHHQHRMLKIYRHSY KDVVSLDSIEKYIDCSQIQPYKCNSHMIISLKPLPHFGSAKKSEETCRTCNRKLMEPDLYRYCSISCKVEAVSRKPNDSN PPFIFTQSLNQGKYVGTVKPPTQRNKRKGTPCRAPLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 196 | 196 | 1.4E-70 | – | |
| PANTHER | 1 | 196 | 196 | 1.4E-70 | – | |
| SUPERFAMILY | 31 | 75 | 45 | 1.39E-6 | – | |
| Gene3D | 35 | 87 | 53 | 8.7E-6 | – | |
| Pfam | 35 | 75 | 41 | 2.4E-5 | ||
| ProSiteProfiles | 36 | 75 | 40 | 10.708 | ||
| Pfam | 77 | 149 | 73 | 4.8E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0054300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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