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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0057600 |
| Transcript ID | LotjaGi6g1v0057600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A1J7GM44|A0A1J7GM44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0057600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10549337..10550896) extracted from Lotus japonicus Gifu genome v1.2.
CGAACAAATTTGCACAGCGATGGCTGCATCATCTTCTGAAGAAAGACCTGTGAAGGAAGCCAAACGAGAGAACACACAGG AGAAACCAAACTGGTTTGAACTAATTCCTAAGAACTCGCTACTAAGATTCTAAACAAGCTTGGTGCCTTTGAAATTTTCA CCACTGCATGCTTTGCGTGTACTTTATGGTGGAAAATATGCAATGACCCTCTTATGTGGCGTACCATTGACTTGACCAAC CACCCTCGCGTACCTTTGTTACCATGCTATTGAACGAAGTCACGGTCATTTAGAAGATATTAGTATATTGAGGATATCGC CACTAGTAACGTCCTCAAATGCATTGCTGATAGGTAATTTCATAGTTTTTCTCTTTTTATTTGCTTAATTGCATGTTTCA TGATTTCTGATACTGATTTTTAATGTTTTTCTCTTAATTGGTGCTTTTTTTTTAATTTATTTATAAAGAGCATATGAAAT TTGAGTTAGGATTCAAAATCAGCATTTGGCTTGGAAGTTTCATAATTTTGTTTAAATATGTTTCTTTGCATCTGTTTTAT GTTATATATATATATATATATATATATATATATATAGTGGAAGTTGCCTACGACGGATGCGGCTTTTGAAATGTTGGGAA GTTTCATATAAACAATTGAGAGAGACAATAAAGAAGCTTCCGCTATTGGAGGAGTTTGAAATTTCATACAGAGTCCTATC TGCGGATACGTTGAAACTCATGGGCAAATATTGCCCACATTTGAAAGTGCTGAAATTTAACAAGGTGGAAGACAAAGACT TGGAGTGTGATGATGAAGCGTTTGCTATTGCAAAAACTATGCCTGAGCTACGTCATCTCCAACTCCTGGGAAATAGACTT ACTAATAAAGGCTTGCTTGCCATTCTTGATGGATGCCCTAATCTTGAATCTCTTGATCTGCGTGTTTGTTCCAAACTCAA TTTGAGCGCAAGTTTGAGAGAAAGGTGTCGTAAGCAGATCAGAAATTTACGTTTTCCAGAAGACTTGAGTGGAGTTTCCA ACTACGTTCACGGTGTTGATCCCTATGAATATTACTGTGGATGTGACATTGACATCGCCATTGAAATGACATATCTAAAA CGTCTTTGTAACGAGTATTATGCATTTCAAGATTCTAGTTTGACTGAGTATTATGGTCAATTATGACTCAGTATTCTGCA TTTCGAGATTCTTCTTAATTCTTAATTCTATTGTTCTTTTCTTTTTATAGTGTCCTAGTAGCAGTTGATAGACTTTGCTA AGATGACTTAAGTATTTTGTTTTTGGTGCCGGATCTCTTTGGTTTCCAATGTTTTTTTTTATTTAATGTTTGGAGGTTCT ATTTTTCCCTCTCTCATGCATTGTGCTCAAGGCAGTTATTTATTCCATAAGAAATTTGGATTGCTGTAGTTGGGGAAATC TTAAATTCACACCATCATTGGAGTTTGAGCCATTAGATCAAATTTATGATAACTCAGATTTTGAGTTTACCTGTGTTGTT CGACCCTTACAGAACCTATTAGCTGTCGAGCCTATCAAAC
CDS sequence (LotjaGi6g1v0057600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGCTTTTGAAATGTTGGGAAGTTTCATATAAACAATTGAGAGAGACAATAAAGAAGCTTCCGCTATTGGAGGAGTT TGAAATTTCATACAGAGTCCTATCTGCGGATACGTTGAAACTCATGGGCAAATATTGCCCACATTTGAAAGTGCTGAAAT TTAACAAGGTGGAAGACAAAGACTTGGAGTGTGATGATGAAGCGTTTGCTATTGCAAAAACTATGCCTGAGCTACGTCAT CTCCAACTCCTGGGAAATAGACTTACTAATAAAGGCTTGCTTGCCATTCTTGATGGATGCCCTAATCTTGAATCTCTTGA TCTGCGTGTTTGTTCCAAACTCAATTTGAGCGCAAGTTTGAGAGAAAGGTGTCGTAAGCAGATCAGAAATTTACGTTTTC CAGAAGACTTGAGTGGAGTTTCCAACTACGTTCACGGTGTTGATCCCTATGAATATTACTGTGGATGTGACATTGACATC GCCATTGAAATGACATATCTAAAACGTCTTTGTAACGAGTATTATGCATTTCAAGATTCTAGTTTGACTGAGTATTATGG TCAATTATGA
Protein sequence (LotjaGi6g1v0057600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLLKCWEVSYKQLRETIKKLPLLEEFEISYRVLSADTLKLMGKYCPHLKVLKFNKVEDKDLECDDEAFAIAKTMPELRH LQLLGNRLTNKGLLAILDGCPNLESLDLRVCSKLNLSASLRERCRKQIRNLRFPEDLSGVSNYVHGVDPYEYYCGCDIDI AIEMTYLKRLCNEYYAFQDSSLTEYYGQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 150 | 149 | 5.4E-44 | – | |
| PANTHER | 2 | 150 | 149 | 5.4E-44 | – | |
| Gene3D | 2 | 144 | 143 | 3.2E-19 | ||
| SUPERFAMILY | 6 | 115 | 110 | 1.75E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0057600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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