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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0062300 |
| Transcript ID | LotjaGi6g1v0062300.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin/actin-like family protein; TAIR: AT3G12380.2 actin-related protein 5; Swiss-Prot: sp|Q940Z2|ARP5_ARATH Actin-related protein 5; TrEMBL-Plants: tr|V7D1K9|V7D1K9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0062300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11330544..11336768) extracted from Lotus japonicus Gifu genome v1.2.
GCTTTTTATATTTATGTGGATCCTGCCTGATAATCAGCAAACAGAAGGGCAATTGTTCGGATACTGGATAATTAGTTTTG AACATTATATAATGCAGGAGAAACTGTCACTATTGTTGGTGATCATGATCCAGCTTTACTGAAATACTTTGACTGCACTC GCTCTGGACCTCGCTCAGCATTTGACAGCAATGTTGTTTACCAGTTTGAAATTATGGAATATGTAAGTTTCCCCTCGTTC TATTTTTGTGAGTGCGGGAGGAATAGGTTTTTTAGCCTTTTGGATACATTTTTGATGTGTTTATGACTTGATTCCCCATG ATCATGTGCTAGTCTGATTACATTGGTTCTGCTACATATGTTATATGCGTGTGAAGTTGCGTCTAGTTCATGCAGTAGTC TATTTCGGTGGTGGCATGTCAGAATTCGGGGTTGTATGTGTGAGAAAGGGTGGTGGCTCCGCTTGTATTGTTGTTATAAG ATACATTTGTACTAATGACATATCTATGCTGTTTAGTTGTTGATTTAGCCAAATTCAACACCAGTAATTTGGAGTAACTT CAACCTAGGGATTCACATTTTGAAACCTTAGGATCTTCTACTCTAAAATGAAAAAAAAAATGATTCCAAGTTCCAAAACA TCTTCTTTCCTATGTATGGATATCTTGCTTCTGAATCTCACTGGTGTGTGGTTATAGATTGCTTAAGAGTTTGAACATGA CTGTAAATCTTGTACTTCGATTTTTCTTTCATGAGTCTAGAGTCTAGACCCTTACATTTCTTCATGGTTTTACATTTTTG TACTTCCTTAGAACTATCACACAGGCGATGGTGCCTTACACCAGGCAGTGCTATTGCTAAGGTTCCTTATCGTAGTATGA AGTAGATGGATGAATCTTTTCGTAGTGTGAATTATATGGGTGAATTGAGGTGAGATAGTGTGGTTTGATAGGTCAAAGTT TAAAGGTCACAAGAGGACATGGAATCATAGCCTTGTAACAACTAACTTAGAGAGGCGGTGTAACATATTAACATGTTATG GAAATACGTACATGTATGTATAAAAGTTTAAAGTGTATGCTGCATTGATTTTGAAGATCATCTCAAGGAAGGCACTACTG ACATTTTATTTCATCCCTAGATTCTGGACTTTGCATTTGACCGGATGGGTGCAACAGGATCAAAGGTATGGCCATGAGTG GAAGTGTTTTTCATTTTTCTTTCTAGAGCATTTTGTATGTTATTGTTGCTACTATGACATTTTAGGGATATTAAACTCTG GTACTAGTATTGGTGTGCTAGTAAATTCAATTTTTCATGCACTTCTAGGATTTAAATTATTCACTCAATCTTCTATATTT TTATGTTTAATGCCAGCGCAGATTGATCATCCTGTACTGATCACAGAATGTGTGTGCAACCCAGTTCAGTCTCGTAGTAA AATGGGAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGGTACTTGTGCTTTATCAACCCTCCAAAAAAAAAATC ATCTGTTACAGCTTACAAAAAATCTTAGTACAAACATAAGTGTTGGCTAATGGCTATTGGCTAGCTTGTTACCTTATGCC CAATCTTTACCACCAGTTCTTCTTAAATGGAAAATCAATTTCTATGTGAAGCCTACAAGACCTTGTTTCATGTCTTGTCA CTAAGTTATTATAATATGGGCCCCATAACGGGTGCATGTTTACCTCTATTTACATGTAAATTTATTGACAAAGTTATCTG TGCTTCTCTGCCATGGCAGCCTTTGGGGTTGATGCAGCATTCAGCTATAAATATAATCAGCAACAAGGTGTTTGTGATAA AGATGGTCTTGCTTTGTGTCCTGGATTCACTACAACCCATGTGATTCCGGTATGCTTTTTATGTTACTTATTTCATTCAG GGATTTTGTATGTGAAGGAAATAAGCTTATTACTTTCTATTGCAGATTATTATAGCTATCTGTCCTCACGAACTTTGTCA TATTTATAGATTTTATATTGTTTTGTGTGTTATCATCACTATTGTGATTATAATAGCTAATACTATTATTCTGTTTGTGG ATTACTTTTTACCTTTCATTGACTATCTCTGAGGACGCACTGTACTGTAATGAAAACAAATCTCTTGTTCTGCACCATGC TTGTCCTTTTGCTTAGTAATAGTTACATGTCCTTTTTTCAATCTGTATATGCCAGACTTCCTACTCTCGATCACCAATGA TGGTGTTGATCAATATAATTGCTTTCAAGATATTTTGATAACAATACTGATATAATGATAGCTTAACCCGATTTTATATC TGTCCTTGTAAAAGAGGGTGTGAACAGTTGAATGTAAAACTGTTCCTACTTTTCTTCTGTAAAGGATGGTATGATAGGAA TGAACCTACTACTAGGGGAGAGTCTATGAGAGGAGAAAGAGGAAAAATGTAGGGGATAAAAAACCCTAATAGTGAGTGTC ATGGGTTGCTATTGTAAGAATAACTAACTAACCTAAAGATTTAAGTGGGTTAGTCTGCAGTTTAGGACGGATAAATAGAG AATGGCGCCTCTTTGTAAACTGCTCAGTTTTGTTGATTGGGACCCTTGAGGAGAGAAATGAGGCTCTCAAAACTAGTGGT CATTGTGCAAACGACCCCAATAAAGATAGTTATCCTCCAAATCATCATTCTTCTCAATTGCACTGCAGCACCAATACCAC CACTAGCTCCTTCTCTGACTTGAATGTCTTCATCTAAATCCACATTAGAACTTTGGTCATTGGTCATTGTTCTCCTTACA ATCTAATCATCATCAGAAAAGACATCCTCAATGTCATAGTTTGCTTATTTCCTGGCTTCCTTCTTCTTGCCCAATCTTGC GTTCGCCATCAGAATTACTGCATCATTCATGGTTTTTTTGCTTTAAACAGTTTCTTTTCTTGGTGTGGACTTGAACATTT ACAAAATCAATTAGCACATAATATGATAGATAAAGAATGAAGTACAATTTTTCAGAAATATGAAATCTTACCACCTTAAA GGATCAGAAATATTAAATCAAGATAGCACTTCCGGCAAAGGGTCCTACTGACTTGCAACCTCACCTCACCTGCGATCTTG ATTGGAGACTCGTGGACTCGTAAGATTGCACATCTTACTTTAATATCCAGATTTGACAGCATTGATAATGCTCATTATTA GTACCGGTTTCTACATGGCTATGTGAAAAAGAATAAGCATGAGAAACTCCTAAAAAATGGCAATTTTTTTAATATTTAAA TAAATATGCAGTATTAGCAATTGTCAGTTCTGCTGGATAGCAGCGTTGTTGATAGGATTTAGATAGCCTACCAATTGTAA CGTGTTTATAATTATTTTTTTTGTGTATTTCCAGTTTGTAGAAGGGGAGCCTATTTATAAAGGATGCTGCCGTACTAATA TTGGTGGATTCCATGTGACTGATTATTTTAAGCAACTGCTTTCACTTAAATATCCTTATCATATGTGAGTATAACATCTT CCTGGTTTTTGTTATCAAACTGACTGCTAAATCAATAGTATTTCTTAGGTTTTATTAAATTCTCAATATAGGGCTAGGTT TACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCACAGGACTATGCATCTGAAGCTCGATTGTTTC AGGTTAGAAATAATTCTTATTTTTCATATTGGTTCCTCCAATTCTTCTAAGATTTCATTAATTGTCTAACAGAAAGGAGC CAAGGAGGCTGAAGAAAAAACCAGATGCTGGCAGCTCCCCTGGGTTCCACCGCCAACTGAGGAGCCTCCTTCTGAGGAAG AGATTGCAAGAAAGGCAGCAATAAGAGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCAAAGAGGTCATCTAGA ATAAATGAATTGGAAAATGAATTGCGTGGTTTGGAATTTCTTTTAAATCAACTTGACCATGTTGAAGAAAGTGGTGTTCC AGCTTTCCTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAATAGAATCTGCCCGTAGTAAAGTTGTGCAATCCTTGCGGA AAACAAAAGGTGAACCAAAGAATGAACAAGCTGAAACTGAAAAGGCTGACTCCAGCAATAATGAGAAGTATACTCTTATA AACATTCCTGATGACATGCTGACCCCAGAGCAGGTCAGTTTTTTTTTTAATTTTTTTTGTCACATGCATCATTAGATTGA ACTCCCATTCTTCCCGACCTTTGATTGTAATTGTAACTTTTTGTTTGGAGCCACTTTTTCTGACAACCATTATATCCAAA TCAATGTTTTGAATGTTATTCTCTGTGCCTTATGAAGTTGACAATATTCATTGGGTGTGCTCTGTTGATAGCTCATCGAA AAGAAGAAACAGTTATCACTCAAATCCATGTCTGACGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAACTCGA AAGAGAAAGGAAACAACAGCTAGAGGAGGAGAAACGCCTGTATGTTTCATACTGAAATATATTAAATTTAATTAAAGTTG CTTTGCTAGATATTTATGAGTGAAAGATTTTTCCATCACATTCAACTTCGTAAGATGTGAAAAATGAAGTGGTTTTACTT TTAACTGTCAACAGAACAGTGTAAATTCACGAATCTCAATTATATGTTTGAACGAAGGGAATTTTTCTCCTTCCAGCAAA TATCTGTTTGTGAGGCCCAAAATGGGGAAACATATTGACCTGAAATGAAATCCGTCACCTTTCTAATTTAAGGTTACTAA GTATCTTAACAAGGGAGAGAATTTTATCTACAGTGCTACCAGCCTTAACTAATTTATAGGACAAGGCTTTTTGTACAAAG CATGATTGCTTTTTTTGGTTACTCGTTAATAGTAATAATACTGTTATTATGGTTTAAATATTTCTGATAATCTGATTGCT TTTTCCCCCTCCCACTGTAGAGAAAACCCGGAGCTTTACTTGGAACAATTACATGCGAGATACAAAGACCTTTCAGAGAG AGTTGACCAAAGAAAACGACTCAAGACAAATGGTGGCAATACAAATGGAAATAGTTTATCCGGTGGTGTTGGTCGTGGTG AGAGACTGAATGCTGCCCAAAGGGAGAGGATGCGGCTCCTAACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATACA TTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGCAGAGATAATGATGATGATGACGAGGGACCAGATGA GGATGACACAGAGCTAGCTCGCATCTCTTTGAGGCTCCAGGTTAGGCTGCATCTTTTGTTATGTTAAACTTTCCAAATTC CAATTATATTCTACAGTCTGTTTGCATGGTTTTAGATCACCTTGTATTGTATATGCTATTGGTGACTCACAAAAATCTTG CTGGTGCTTTGGTAGGACTTAGATCCAACATTTGTACCCAAGGTGGAAACCAGTAGCTCCCAACCTGCTGAGGCTCCACG TCCTCGTCCTCTTACTAAAGAAGATTTTCAGATTGTTTTTGGGGTTGAAAGGTTCAGATGCCCTGAAATTTTGTTCAATC CAAACTGGATTGGGGTTGATCAGGCAGGACTAGACGAAATGGCCGGGGTCTCATTAAGAAGGTTATCATATAAGGATGAA ATACTGGAAGAGAGACTGACTAGTTCGATACTCGTGACTGGTGGAAGTTCTCTTTACCCTGGCATCGTTGAACGTCTCGA AGCTGGAATTCGGATGATTAGACCCTGCGGATCGCGTATAAAAATAGTTAGAGCTCTGGATCCAGTTATGGATGCATGGC GTGGGGCTTCTGCTTATGCATCAAACCCAGGATTCCATACACAAACTTTCAGTAGGGAGGACTATGATGAAAAGGGTGAA GACTGGCTTCGCGGTTATCAACTGCAATATTCGTTGTAATTGACTTGTAATCCAAGACTGTATATTTTCTTGAACATCAT ACCTTAATTTAGACATATCGGTAATCTAACTTGCTGCTTGGTAATCTAACTTGCTGCTCATACTGTCGCTGATGCTAGAA GCAGCTATTGATATTTTCACTTTTCAGCTGATGAATAGCACCTACATAGTTTTCATTCTCCTCGTTTAAATCTCTGATCT GCATAATTTTCTGGATAAAGAAATGTATATATTATTTTTTTTTGGTACAAGAAGGAAACAGAAAT
CDS sequence (LotjaGi6g1v0062300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGGGTTGATGCAGCATTCAGCTATAAATATAA TCAGCAACAAGGTGTTTGTGATAAAGATGGTCTTGCTTTGTGTCCTGGATTCACTACAACCCATGTGATTCCGTTTGTAG AAGGGGAGCCTATTTATAAAGGATGCTGCCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTTAAGCAACTGCTT TCACTTAAATATCCTTATCATATGGCTAGGTTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGC ACAGGACTATGCATCTGAAGCTCGATTGTTTCAGAAAGGAGCCAAGGAGGCTGAAGAAAAAACCAGATGCTGGCAGCTCC CCTGGGTTCCACCGCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAGAGAGAAACAAGGT CAAAGGTTGCGAGAAATGGCTGAGGCAAAGAGGTCATCTAGAATAAATGAATTGGAAAATGAATTGCGTGGTTTGGAATT TCTTTTAAATCAACTTGACCATGTTGAAGAAAGTGGTGTTCCAGCTTTCCTAGCAGAGACTGGCTATGTCTCTAGGCAGG AAATAGAATCTGCCCGTAGTAAAGTTGTGCAATCCTTGCGGAAAACAAAAGGTGAACCAAAGAATGAACAAGCTGAAACT GAAAAGGCTGACTCCAGCAATAATGAGAAGTATACTCTTATAAACATTCCTGATGACATGCTGACCCCAGAGCAGCTCAT CGAAAAGAAGAAACAGTTATCACTCAAATCCATGTCTGACGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAAC TCGAAAGAGAAAGGAAACAACAGCTAGAGGAGGAGAAACGCCTAGAAAACCCGGAGCTTTACTTGGAACAATTACATGCG AGATACAAAGACCTTTCAGAGAGAGTTGACCAAAGAAAACGACTCAAGACAAATGGTGGCAATACAAATGGAAATAGTTT ATCCGGTGGTGTTGGTCGTGGTGAGAGACTGAATGCTGCCCAAAGGGAGAGGATGCGGCTCCTAACAACTGCTGCCTTTG ATCGTGGTAAGGGCGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGCAGAGATAATGAT GATGATGACGAGGGACCAGATGAGGATGACACAGAGCTAGCTCGCATCTCTTTGAGGCTCCAGGACTTAGATCCAACATT TGTACCCAAGGTGGAAACCAGTAGCTCCCAACCTGCTGAGGCTCCACGTCCTCGTCCTCTTACTAAAGAAGATTTTCAGA TTGTTTTTGGGGTTGAAAGGTTCAGATGCCCTGAAATTTTGTTCAATCCAAACTGGATTGGGGTTGATCAGGCAGGACTA GACGAAATGGCCGGGGTCTCATTAAGAAGGTTATCATATAAGGATGAAATACTGGAAGAGAGACTGACTAGTTCGATACT CGTGACTGGTGGAAGTTCTCTTTACCCTGGCATCGTTGAACGTCTCGAAGCTGGAATTCGGATGATTAGACCCTGCGGAT CGCGTATAAAAATAGTTAGAGCTCTGGATCCAGTTATGGATGCATGGCGTGGGGCTTCTGCTTATGCATCAAACCCAGGA TTCCATACACAAACTTTCAGTAGGGAGGACTATGATGAAAAGGGTGAAGACTGGCTTCGCGGTTATCAACTGCAATATTC GTTGTAA
Protein sequence (LotjaGi6g1v0062300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELLFETYGVPSIAFGVDAAFSYKYNQQQGVCDKDGLALCPGFTTTHVIPFVEGEPIYKGCCRTNIGGFHVTDYFKQLL SLKYPYHMARFTWEKVEDLKMEHCYIAQDYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIREKQG QRLREMAEAKRSSRINELENELRGLEFLLNQLDHVEESGVPAFLAETGYVSRQEIESARSKVVQSLRKTKGEPKNEQAET EKADSSNNEKYTLINIPDDMLTPEQLIEKKKQLSLKSMSDGRQRLKQKRYEEELERERKQQLEEEKRLENPELYLEQLHA RYKDLSERVDQRKRLKTNGGNTNGNSLSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDND DDDEGPDEDDTELARISLRLQDLDPTFVPKVETSSSQPAEAPRPRPLTKEDFQIVFGVERFRCPEILFNPNWIGVDQAGL DEMAGVSLRRLSYKDEILEERLTSSILVTGGSSLYPGIVERLEAGIRMIRPCGSRIKIVRALDPVMDAWRGASAYASNPG FHTQTFSREDYDEKGEDWLRGYQLQYSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 16 | 16 | 7.0E-22 | – | |
| PANTHER | 1 | 582 | 582 | 4.5E-74 | ||
| PANTHER | 1 | 582 | 582 | 4.5E-74 | ||
| Pfam | 3 | 102 | 100 | 2.1E-9 | ||
| Gene3D | 18 | 72 | 55 | 7.0E-22 | – | |
| SUPERFAMILY | 37 | 580 | 544 | 6.76E-54 | ||
| Gene3D | 73 | 126 | 54 | 7.0E-22 | – | |
| SMART | 136 | 584 | 449 | 4.5E-6 | ||
| Coils | 175 | 195 | 21 | - | – | |
| MobiDBLite | 224 | 246 | 23 | - | – | |
| MobiDBLite | 224 | 247 | 24 | - | – | |
| MobiDBLite | 272 | 292 | 21 | - | – | |
| Coils | 285 | 311 | 27 | - | – | |
| Coils | 315 | 335 | 21 | - | – | |
| MobiDBLite | 427 | 446 | 20 | - | – | |
| Gene3D | 440 | 477 | 38 | 7.3E-28 | – | |
| Pfam | 453 | 579 | 127 | 1.5E-27 | ||
| Gene3D | 478 | 547 | 70 | 7.3E-28 | – | |
| Gene3D | 548 | 576 | 29 | 7.3E-28 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0062300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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