Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0062300 |
| Transcript ID | LotjaGi6g1v0062300.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin/actin-like family protein; TAIR: AT3G12380.2 actin-related protein 5; Swiss-Prot: sp|Q940Z2|ARP5_ARATH Actin-related protein 5; TrEMBL-Plants: tr|V7D1K9|V7D1K9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0062300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11330810..11335288) extracted from Lotus japonicus Gifu genome v1.2.
ATAGGTACTTGTGCTTTATCAACCCTCCAAAAAAAAAATCATCTGTTACAGCTTACAAAAAATCTTAGTACAAACATAAG TGTTGGCTAATGGCTATTGGCTAGCTTGTTACCTTATGCCCAATCTTTACCACCAGTTCTTCTTAAATGGAAAATCAATT TCTATGTGAAGCCTACAAGACCTTGTTTCATGTCTTGTCACTAAGTTATTATAATATGGGCCCCATAACGGGTGCATGTT TACCTCTATTTACATGTAAATTTATTGACAAAGTTATCTGTGCTTCTCTGCCATGGCAGCCTTTGGGGTTGATGCAGCAT TCAGCTATAAATATAATCAGCAACAAGGTGTTTGTGATAAAGATGGTCTTGCTTTGTGTCCTGGATTCACTACAACCCAT GTGATTCCGGTATGCTTTTTATGTTACTTATTTCATTCAGGGATTTTGTATGTGAAGGAAATAAGCTTATTACTTTCTAT TGCAGATTATTATAGCTATCTGTCCTCACGAACTTTGTCATATTTATAGATTTTATATTGTTTTGTGTGTTATCATCACT ATTGTGATTATAATAGCTAATACTATTATTCTGTTTGTGGATTACTTTTTACCTTTCATTGACTATCTCTGAGGACGCAC TGTACTGTAATGAAAACAAATCTCTTGTTCTGCACCATGCTTGTCCTTTTGCTTAGTAATAGTTACATGTCCTTTTTTCA ATCTGTATATGCCAGACTTCCTACTCTCGATCACCAATGATGGTGTTGATCAATATAATTGCTTTCAAGATATTTTGATA ACAATACTGATATAATGATAGCTTAACCCGATTTTATATCTGTCCTTGTAAAAGAGGGTGTGAACAGTTGAATGTAAAAC TGTTCCTACTTTTCTTCTGTAAAGGATGGTATGATAGGAATGAACCTACTACTAGGGGAGAGTCTATGAGAGGAGAAAGA GGAAAAATGTAGGGGATAAAAAACCCTAATAGTGAGTGTCATGGGTTGCTATTGTAAGAATAACTAACTAACCTAAAGAT TTAAGTGGGTTAGTCTGCAGTTTAGGACGGATAAATAGAGAATGGCGCCTCTTTGTAAACTGCTCAGTTTTGTTGATTGG GACCCTTGAGGAGAGAAATGAGGCTCTCAAAACTAGTGGTCATTGTGCAAACGACCCCAATAAAGATAGTTATCCTCCAA ATCATCATTCTTCTCAATTGCACTGCAGCACCAATACCACCACTAGCTCCTTCTCTGACTTGAATGTCTTCATCTAAATC CACATTAGAACTTTGGTCATTGGTCATTGTTCTCCTTACAATCTAATCATCATCAGAAAAGACATCCTCAATGTCATAGT TTGCTTATTTCCTGGCTTCCTTCTTCTTGCCCAATCTTGCGTTCGCCATCAGAATTACTGCATCATTCATGGTTTTTTTG CTTTAAACAGTTTCTTTTCTTGGTGTGGACTTGAACATTTACAAAATCAATTAGCACATAATATGATAGATAAAGAATGA AGTACAATTTTTCAGAAATATGAAATCTTACCACCTTAAAGGATCAGAAATATTAAATCAAGATAGCACTTCCGGCAAAG GGTCCTACTGACTTGCAACCTCACCTCACCTGCGATCTTGATTGGAGACTCGTGGACTCGTAAGATTGCACATCTTACTT TAATATCCAGATTTGACAGCATTGATAATGCTCATTATTAGTACCGGTTTCTACATGGCTATGTGAAAAAGAATAAGCAT GAGAAACTCCTAAAAAATGGCAATTTTTTTAATATTTAAATAAATATGCAGTATTAGCAATTGTCAGTTCTGCTGGATAG CAGCGTTGTTGATAGGATTTAGATAGCCTACCAATTGTAACGTGTTTATAATTATTTTTTTTGTGTATTTCCAGTTTGTA GAAGGGGAGCCTATTTATAAAGGATGCTGCCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTTAAGCAACTGCT TTCACTTAAATATCCTTATCATATGTGAGTATAACATCTTCCTGGTTTTTGTTATCAAACTGACTGCTAAATCAATAGTA TTTCTTAGGTTTTATTAAATTCTCAATATAGGGCTAGGTTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGT TACATTGCACAGGACTATGCATCTGAAGCTCGATTGTTTCAGGTTAGAAATAATTCTTATTTTTCATATTGGTTCCTCCA ATTCTTCTAAGATTTCATTAATTGTCTAACAGAAAGGAGCCAAGGAGGCTGAAGAAAAAACCAGATGCTGGCAGCTCCCC TGGGTTCCACCGCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAGAGAGAAACAAGGTCA AAGGTTGCGAGAAATGGCTGAGGCAAAGAGGTCATCTAGAATAAATGAATTGGAAAATGAATTGCGTGGTTTGGAATTTC TTTTAAATCAACTTGACCATGTTGAAGAAAGTGGTGTTCCAGCTTTCCTAGCAGAGACTGGCTATGTCTCTAGGCAGGAA ATAGAATCTGCCCGTAGTAAAGTTGTGCAATCCTTGCGGAAAACAAAAGGTGAACCAAAGAATGAACAAGCTGAAACTGA AAAGGCTGACTCCAGCAATAATGAGAAGTATACTCTTATAAACATTCCTGATGACATGCTGACCCCAGAGCAGGTCAGTT TTTTTTTTAATTTTTTTTGTCACATGCATCATTAGATTGAACTCCCATTCTTCCCGACCTTTGATTGTAATTGTAACTTT TTGTTTGGAGCCACTTTTTCTGACAACCATTATATCCAAATCAATGTTTTGAATGTTATTCTCTGTGCCTTATGAAGTTG ACAATATTCATTGGGTGTGCTCTGTTGATAGCTCATCGAAAAGAAGAAACAGTTATCACTCAAATCCATGTCTGACGGGA GGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAACTCGAAAGAGAAAGGAAACAACAGCTAGAGGAGGAGAAACGCCTG TATGTTTCATACTGAAATATATTAAATTTAATTAAAGTTGCTTTGCTAGATATTTATGAGTGAAAGATTTTTCCATCACA TTCAACTTCGTAAGATGTGAAAAATGAAGTGGTTTTACTTTTAACTGTCAACAGAACAGTGTAAATTCACGAATCTCAAT TATATGTTTGAACGAAGGGAATTTTTCTCCTTCCAGCAAATATCTGTTTGTGAGGCCCAAAATGGGGAAACATATTGACC TGAAATGAAATCCGTCACCTTTCTAATTTAAGGTTACTAAGTATCTTAACAAGGGAGAGAATTTTATCTACAGTGCTACC AGCCTTAACTAATTTATAGGACAAGGCTTTTTGTACAAAGCATGATTGCTTTTTTTGGTTACTCGTTAATAGTAATAATA CTGTTATTATGGTTTAAATATTTCTGATAATCTGATTGCTTTTTCCCCCTCCCACTGTAGAGAAAACCCGGAGCTTTACT TGGAACAATTACATGCGAGATACAAAGACCTTTCAGAGAGAGTTGACCAAAGAAAACGACTCAAGACAAATGGTGGCAAT ACAAATGGAAATAGTTTATCCGGTGGTGTTGGTCGTGGTGAGAGACTGAATGCTGCCCAAAGGGAGAGGATGCGGCTCCT AACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGA TGAGCAGAGATAATGATGATGATGACGAGGGACCAGATGAGGATGACACAGAGCTAGCTCGCATCTCTTTGAGGCTCCAG GTTAGGCTGCATCTTTTGTTATGTTAAACTTTCCAAATTCCAATTATATTCTACAGTCTGTTTGCATGGTTTTAGATCAC CTTGTATTGTATATGCTATTGGTGACTCACAAAAATCTTGCTGGTGCTTTGGTAGGACTTAGATCCAACATTTGTACCCA AGGTGGAAACCAGTAGCTCCCAACCTGCTGAGGCTCCACGTCCTCGTCCTCTTACTAAAGAAGATTTTCAGATTGTTTTT GGGGTTGAAAGGTTCAGATGCCCTGAAATTTTGTTCAATCCAAACTGGATTGGGGTTGATCAGGCAGGACTAGACGAAAT GGCCGGGGTCTCATTAAGAAGGTTATCATATAAGGATGAAATACTGGAAGAGAGACTGACTAGTTCGATACTCGTGACTG GTGGAAGTTCTCTTTACCCTGGCATCGTTGAACGTCTCGAAGCTGGAATTCGGATGATTAGACCCTGCGGATCGCGTATA AAAATAGTTAGAGCTCTGGATCCAGTTATGGATGCATGGCGTGGGGCTTCTGCTTATGCATCAAACCCAGGATTCCATAC ACAAACTTTCAGTAGGGAGGACTATGATGAAAAGGGTGAAGACTGGCTTCGCGGTTATCAACTGCAATATTCGTTGTAA
CDS sequence (LotjaGi6g1v0062300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGGTTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCACAGGACTATGCATCTGAAGC TCGATTGTTTCAGAAAGGAGCCAAGGAGGCTGAAGAAAAAACCAGATGCTGGCAGCTCCCCTGGGTTCCACCGCCAACTG AGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAGAGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCT GAGGCAAAGAGGTCATCTAGAATAAATGAATTGGAAAATGAATTGCGTGGTTTGGAATTTCTTTTAAATCAACTTGACCA TGTTGAAGAAAGTGGTGTTCCAGCTTTCCTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAATAGAATCTGCCCGTAGTA AAGTTGTGCAATCCTTGCGGAAAACAAAAGGTGAACCAAAGAATGAACAAGCTGAAACTGAAAAGGCTGACTCCAGCAAT AATGAGAAGTATACTCTTATAAACATTCCTGATGACATGCTGACCCCAGAGCAGCTCATCGAAAAGAAGAAACAGTTATC ACTCAAATCCATGTCTGACGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAACTCGAAAGAGAAAGGAAACAAC AGCTAGAGGAGGAGAAACGCCTAGAAAACCCGGAGCTTTACTTGGAACAATTACATGCGAGATACAAAGACCTTTCAGAG AGAGTTGACCAAAGAAAACGACTCAAGACAAATGGTGGCAATACAAATGGAAATAGTTTATCCGGTGGTGTTGGTCGTGG TGAGAGACTGAATGCTGCCCAAAGGGAGAGGATGCGGCTCCTAACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATA CATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGCAGAGATAATGATGATGATGACGAGGGACCAGAT GAGGATGACACAGAGCTAGCTCGCATCTCTTTGAGGCTCCAGGACTTAGATCCAACATTTGTACCCAAGGTGGAAACCAG TAGCTCCCAACCTGCTGAGGCTCCACGTCCTCGTCCTCTTACTAAAGAAGATTTTCAGATTGTTTTTGGGGTTGAAAGGT TCAGATGCCCTGAAATTTTGTTCAATCCAAACTGGATTGGGGTTGATCAGGCAGGACTAGACGAAATGGCCGGGGTCTCA TTAAGAAGGTTATCATATAAGGATGAAATACTGGAAGAGAGACTGACTAGTTCGATACTCGTGACTGGTGGAAGTTCTCT TTACCCTGGCATCGTTGAACGTCTCGAAGCTGGAATTCGGATGATTAGACCCTGCGGATCGCGTATAAAAATAGTTAGAG CTCTGGATCCAGTTATGGATGCATGGCGTGGGGCTTCTGCTTATGCATCAAACCCAGGATTCCATACACAAACTTTCAGT AGGGAGGACTATGATGAAAAGGGTGAAGACTGGCTTCGCGGTTATCAACTGCAATATTCGTTGTAA
Protein sequence (LotjaGi6g1v0062300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARFTWEKVEDLKMEHCYIAQDYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIREKQGQRLREMA EAKRSSRINELENELRGLEFLLNQLDHVEESGVPAFLAETGYVSRQEIESARSKVVQSLRKTKGEPKNEQAETEKADSSN NEKYTLINIPDDMLTPEQLIEKKKQLSLKSMSDGRQRLKQKRYEEELERERKQQLEEEKRLENPELYLEQLHARYKDLSE RVDQRKRLKTNGGNTNGNSLSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEGPD EDDTELARISLRLQDLDPTFVPKVETSSSQPAEAPRPRPLTKEDFQIVFGVERFRCPEILFNPNWIGVDQAGLDEMAGVS LRRLSYKDEILEERLTSSILVTGGSSLYPGIVERLEAGIRMIRPCGSRIKIVRALDPVMDAWRGASAYASNPGFHTQTFS REDYDEKGEDWLRGYQLQYSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 4 | 493 | 490 | 5.41E-38 | ||
| SMART | 49 | 497 | 449 | 4.5E-6 | ||
| Coils | 88 | 108 | 21 | - | – | |
| MobiDBLite | 137 | 159 | 23 | - | – | |
| MobiDBLite | 137 | 161 | 25 | - | – | |
| PANTHER | 161 | 495 | 335 | 2.9E-33 | ||
| PANTHER | 161 | 495 | 335 | 2.9E-33 | ||
| MobiDBLite | 185 | 205 | 21 | - | – | |
| Coils | 198 | 224 | 27 | - | – | |
| Coils | 228 | 248 | 21 | - | – | |
| MobiDBLite | 340 | 359 | 20 | - | – | |
| Gene3D | 353 | 390 | 38 | 5.4E-28 | – | |
| Pfam | 366 | 492 | 127 | 7.8E-28 | ||
| Gene3D | 391 | 460 | 70 | 5.4E-28 | – | |
| Gene3D | 461 | 489 | 29 | 5.4E-28 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0062300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…