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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0062300 |
| Transcript ID | LotjaGi6g1v0062300.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin/actin-like family protein; TAIR: AT3G12380.1 actin-related protein 5; Swiss-Prot: sp|Q940Z2|ARP5_ARATH Actin-related protein 5; TrEMBL-Plants: tr|K7M5B7|K7M5B7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0062300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11330810..11337379) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTTTCATCTCCAAAATTCAGCGCCAAACCGATTACCATCTCTTCAGTTCCACCACTCCCATCGTCATCGACAATGG CGCTTCCTATTTCCGTATTGGGTACTCTCTCAAACCCTAATTCACCTCAAAAATTGATACTATTTTCTGGGTTTGCGCTT TTTCTCCAATTTTTCCAAATCAGTTTGTGATGGGTGTGTGGATTTTAACTTCAAGTTCGTTCCTCTTGGTGAATTGCACA GGTGGGCAGGAGAGACTGAACCCCGTGTTGTTTTCCGCAACATTGTCCAAAGGCCACGCCATAAAGCCACTGGTATCATG TTTTGTCATGTGTTTGTTTCATTGTTTGTGTTTGCCTGAAAACTTTCTTTGTTCTCAAGAGAAACTGTTTAGTTAAGATT GTACTTGTTTTTAGGTGTGTAATTGTGTCAATGAGCTTATAATCTCATAAGAAGTTTCCTAGCAGTTTGTCACTAGTTCA ATTCCAGTGGCTTTTAAGGATTGTAGTTGTTATGCTAGTTCTTTGTTGCCTTTCTGTTTCTGCATTAGATTAATTTGATT TCTTTTTGAAGAATAAGAGGACCAGGATTATTTATTATTTCTGAATTATTAGCTTTTTATATTTATGTGGATCCTGCCTG ATAATCAGCAAACAGAAGGGCAATTGTTCGGATACTGGATAATTAGTTTTGAACATTATATAATGCAGGAGAAACTGTCA CTATTGTTGGTGATCATGATCCAGCTTTACTGAAATACTTTGACTGCACTCGCTCTGGACCTCGCTCAGCATTTGACAGC AATGTTGTTTACCAGTTTGAAATTATGGAATATGTAAGTTTCCCCTCGTTCTATTTTTGTGAGTGCGGGAGGAATAGGTT TTTTAGCCTTTTGGATACATTTTTGATGTGTTTATGACTTGATTCCCCATGATCATGTGCTAGTCTGATTACATTGGTTC TGCTACATATGTTATATGCGTGTGAAGTTGCGTCTAGTTCATGCAGTAGTCTATTTCGGTGGTGGCATGTCAGAATTCGG GGTTGTATGTGTGAGAAAGGGTGGTGGCTCCGCTTGTATTGTTGTTATAAGATACATTTGTACTAATGACATATCTATGC TGTTTAGTTGTTGATTTAGCCAAATTCAACACCAGTAATTTGGAGTAACTTCAACCTAGGGATTCACATTTTGAAACCTT AGGATCTTCTACTCTAAAATGAAAAAAAAAATGATTCCAAGTTCCAAAACATCTTCTTTCCTATGTATGGATATCTTGCT TCTGAATCTCACTGGTGTGTGGTTATAGATTGCTTAAGAGTTTGAACATGACTGTAAATCTTGTACTTCGATTTTTCTTT CATGAGTCTAGAGTCTAGACCCTTACATTTCTTCATGGTTTTACATTTTTGTACTTCCTTAGAACTATCACACAGGCGAT GGTGCCTTACACCAGGCAGTGCTATTGCTAAGGTTCCTTATCGTAGTATGAAGTAGATGGATGAATCTTTTCGTAGTGTG AATTATATGGGTGAATTGAGGTGAGATAGTGTGGTTTGATAGGTCAAAGTTTAAAGGTCACAAGAGGACATGGAATCATA GCCTTGTAACAACTAACTTAGAGAGGCGGTGTAACATATTAACATGTTATGGAAATACGTACATGTATGTATAAAAGTTT AAAGTGTATGCTGCATTGATTTTGAAGATCATCTCAAGGAAGGCACTACTGACATTTTATTTCATCCCTAGATTCTGGAC TTTGCATTTGACCGGATGGGTGCAACAGGATCAAAGGTATGGCCATGAGTGGAAGTGTTTTTCATTTTTCTTTCTAGAGC ATTTTGTATGTTATTGTTGCTACTATGACATTTTAGGGATATTAAACTCTGGTACTAGTATTGGTGTGCTAGTAAATTCA ATTTTTCATGCACTTCTAGGATTTAAATTATTCACTCAATCTTCTATATTTTTATGTTTAATGCCAGCGCAGATTGATCA TCCTGTACTGATCACAGAATGTGTGTGCAACCCAGTTCAGTCTCGTAGTAAAATGGGAGAACTTCTTTTTGAGACTTATG GAGTTCCATCTATAGGTACTTGTGCTTTATCAACCCTCCAAAAAAAAAATCATCTGTTACAGCTTACAAAAAATCTTAGT ACAAACATAAGTGTTGGCTAATGGCTATTGGCTAGCTTGTTACCTTATGCCCAATCTTTACCACCAGTTCTTCTTAAATG GAAAATCAATTTCTATGTGAAGCCTACAAGACCTTGTTTCATGTCTTGTCACTAAGTTATTATAATATGGGCCCCATAAC GGGTGCATGTTTACCTCTATTTACATGTAAATTTATTGACAAAGTTATCTGTGCTTCTCTGCCATGGCAGCCTTTGGGGT TGATGCAGCATTCAGCTATAAATATAATCAGCAACAAGGTGTTTGTGATAAAGATGGTCTTGCTTTGTGTCCTGGATTCA CTACAACCCATGTGATTCCGGTATGCTTTTTATGTTACTTATTTCATTCAGGGATTTTGTATGTGAAGGAAATAAGCTTA TTACTTTCTATTGCAGATTATTATAGCTATCTGTCCTCACGAACTTTGTCATATTTATAGATTTTATATTGTTTTGTGTG TTATCATCACTATTGTGATTATAATAGCTAATACTATTATTCTGTTTGTGGATTACTTTTTACCTTTCATTGACTATCTC TGAGGACGCACTGTACTGTAATGAAAACAAATCTCTTGTTCTGCACCATGCTTGTCCTTTTGCTTAGTAATAGTTACATG TCCTTTTTTCAATCTGTATATGCCAGACTTCCTACTCTCGATCACCAATGATGGTGTTGATCAATATAATTGCTTTCAAG ATATTTTGATAACAATACTGATATAATGATAGCTTAACCCGATTTTATATCTGTCCTTGTAAAAGAGGGTGTGAACAGTT GAATGTAAAACTGTTCCTACTTTTCTTCTGTAAAGGATGGTATGATAGGAATGAACCTACTACTAGGGGAGAGTCTATGA GAGGAGAAAGAGGAAAAATGTAGGGGATAAAAAACCCTAATAGTGAGTGTCATGGGTTGCTATTGTAAGAATAACTAACT AACCTAAAGATTTAAGTGGGTTAGTCTGCAGTTTAGGACGGATAAATAGAGAATGGCGCCTCTTTGTAAACTGCTCAGTT TTGTTGATTGGGACCCTTGAGGAGAGAAATGAGGCTCTCAAAACTAGTGGTCATTGTGCAAACGACCCCAATAAAGATAG TTATCCTCCAAATCATCATTCTTCTCAATTGCACTGCAGCACCAATACCACCACTAGCTCCTTCTCTGACTTGAATGTCT TCATCTAAATCCACATTAGAACTTTGGTCATTGGTCATTGTTCTCCTTACAATCTAATCATCATCAGAAAAGACATCCTC AATGTCATAGTTTGCTTATTTCCTGGCTTCCTTCTTCTTGCCCAATCTTGCGTTCGCCATCAGAATTACTGCATCATTCA TGGTTTTTTTGCTTTAAACAGTTTCTTTTCTTGGTGTGGACTTGAACATTTACAAAATCAATTAGCACATAATATGATAG ATAAAGAATGAAGTACAATTTTTCAGAAATATGAAATCTTACCACCTTAAAGGATCAGAAATATTAAATCAAGATAGCAC TTCCGGCAAAGGGTCCTACTGACTTGCAACCTCACCTCACCTGCGATCTTGATTGGAGACTCGTGGACTCGTAAGATTGC ACATCTTACTTTAATATCCAGATTTGACAGCATTGATAATGCTCATTATTAGTACCGGTTTCTACATGGCTATGTGAAAA AGAATAAGCATGAGAAACTCCTAAAAAATGGCAATTTTTTTAATATTTAAATAAATATGCAGTATTAGCAATTGTCAGTT CTGCTGGATAGCAGCGTTGTTGATAGGATTTAGATAGCCTACCAATTGTAACGTGTTTATAATTATTTTTTTTGTGTATT TCCAGTTTGTAGAAGGGGAGCCTATTTATAAAGGATGCTGCCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTT AAGCAACTGCTTTCACTTAAATATCCTTATCATATGTGAGTATAACATCTTCCTGGTTTTTGTTATCAAACTGACTGCTA AATCAATAGTATTTCTTAGGTTTTATTAAATTCTCAATATAGGGCTAGGTTTACATGGGAAAAGGTTGAAGACCTGAAGA TGGAACATTGTTACATTGCACAGGACTATGCATCTGAAGCTCGATTGTTTCAGGTTAGAAATAATTCTTATTTTTCATAT TGGTTCCTCCAATTCTTCTAAGATTTCATTAATTGTCTAACAGAAAGGAGCCAAGGAGGCTGAAGAAAAAACCAGATGCT GGCAGCTCCCCTGGGTTCCACCGCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAGAGAG AAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCAAAGAGGTCATCTAGAATAAATGAATTGGAAAATGAATTGCGTGG TTTGGAATTTCTTTTAAATCAACTTGACCATGTTGAAGAAAGTGGTGTTCCAGCTTTCCTAGCAGAGACTGGCTATGTCT CTAGGCAGGAAATAGAATCTGCCCGTAGTAAAGTTGTGCAATCCTTGCGGAAAACAAAAGGTGAACCAAAGAATGAACAA GCTGAAACTGAAAAGGCTGACTCCAGCAATAATGAGAAGTATACTCTTATAAACATTCCTGATGACATGCTGACCCCAGA GCAGGTCAGTTTTTTTTTTAATTTTTTTTGTCACATGCATCATTAGATTGAACTCCCATTCTTCCCGACCTTTGATTGTA ATTGTAACTTTTTGTTTGGAGCCACTTTTTCTGACAACCATTATATCCAAATCAATGTTTTGAATGTTATTCTCTGTGCC TTATGAAGTTGACAATATTCATTGGGTGTGCTCTGTTGATAGCTCATCGAAAAGAAGAAACAGTTATCACTCAAATCCAT GTCTGACGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAACTCGAAAGAGAAAGGAAACAACAGCTAGAGGAGG AGAAACGCCTGTATGTTTCATACTGAAATATATTAAATTTAATTAAAGTTGCTTTGCTAGATATTTATGAGTGAAAGATT TTTCCATCACATTCAACTTCGTAAGATGTGAAAAATGAAGTGGTTTTACTTTTAACTGTCAACAGAACAGTGTAAATTCA CGAATCTCAATTATATGTTTGAACGAAGGGAATTTTTCTCCTTCCAGCAAATATCTGTTTGTGAGGCCCAAAATGGGGAA ACATATTGACCTGAAATGAAATCCGTCACCTTTCTAATTTAAGGTTACTAAGTATCTTAACAAGGGAGAGAATTTTATCT ACAGTGCTACCAGCCTTAACTAATTTATAGGACAAGGCTTTTTGTACAAAGCATGATTGCTTTTTTTGGTTACTCGTTAA TAGTAATAATACTGTTATTATGGTTTAAATATTTCTGATAATCTGATTGCTTTTTCCCCCTCCCACTGTAGAGAAAACCC GGAGCTTTACTTGGAACAATTACATGCGAGATACAAAGACCTTTCAGAGAGAGTTGACCAAAGAAAACGACTCAAGACAA ATGGTGGCAATACAAATGGAAATAGTTTATCCGGTGGTGTTGGTCGTGGTGAGAGACTGAATGCTGCCCAAAGGGAGAGG ATGCGGCTCCTAACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACT TTACAAATTGATGAGCAGAGATAATGATGATGATGACGAGGGACCAGATGAGGATGACACAGAGCTAGCTCGCATCTCTT TGAGGCTCCAGGTTAGGCTGCATCTTTTGTTATGTTAAACTTTCCAAATTCCAATTATATTCTACAGTCTGTTTGCATGG TTTTAGATCACCTTGTATTGTATATGCTATTGGTGACTCACAAAAATCTTGCTGGTGCTTTGGTAGGACTTAGATCCAAC ATTTGTACCCAAGGTGGAAACCAGTAGCTCCCAACCTGCTGAGGCTCCACGTCCTCGTCCTCTTACTAAAGAAGATTTTC AGATTGTTTTTGGGGTTGAAAGGTTCAGATGCCCTGAAATTTTGTTCAATCCAAACTGGATTGGGGTTGATCAGGCAGGA CTAGACGAAATGGCCGGGGTCTCATTAAGAAGGTTATCATATAAGGATGAAATACTGGAAGAGAGACTGACTAGTTCGAT ACTCGTGACTGGTGGAAGTTCTCTTTACCCTGGCATCGTTGAACGTCTCGAAGCTGGAATTCGGATGATTAGACCCTGCG GATCGCGTATAAAAATAGTTAGAGCTCTGGATCCAGTTATGGATGCATGGCGTGGGGCTTCTGCTTATGCATCAAACCCA GGATTCCATACACAAACTTTCAGTAGGGAGGACTATGATGAAAAGGGTGAAGACTGGCTTCGCGGTTATCAACTGCAATA TTCGTTGTAA
CDS sequence (LotjaGi6g1v0062300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTTCATCTCCAAAATTCAGCGCCAAACCGATTACCATCTCTTCAGTTCCACCACTCCCATCGTCATCGACAATGG CGCTTCCTATTTCCGTATTGGGTGGGCAGGAGAGACTGAACCCCGTGTTGTTTTCCGCAACATTGTCCAAAGGCCACGCC ATAAAGCCACTGGAGAAACTGTCACTATTGTTGGTGATCATGATCCAGCTTTACTGAAATACTTTGACTGCACTCGCTCT GGACCTCGCTCAGCATTTGACAGCAATGTTGTTTACCAGTTTGAAATTATGGAATATATTCTGGACTTTGCATTTGACCG GATGGGTGCAACAGGATCAAAGATTGATCATCCTGTACTGATCACAGAATGTGTGTGCAACCCAGTTCAGTCTCGTAGTA AAATGGGAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGGGTTGATGCAGCATTCAGCTATAAATAT AATCAGCAACAAGGTGTTTGTGATAAAGATGGTCTTGCTTTGTGTCCTGGATTCACTACAACCCATGTGATTCCGTTTGT AGAAGGGGAGCCTATTTATAAAGGATGCTGCCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTTAAGCAACTGC TTTCACTTAAATATCCTTATCATATGGCTAGGTTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATT GCACAGGACTATGCATCTGAAGCTCGATTGTTTCAGAAAGGAGCCAAGGAGGCTGAAGAAAAAACCAGATGCTGGCAGCT CCCCTGGGTTCCACCGCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAGAGAGAAACAAG GTCAAAGGTTGCGAGAAATGGCTGAGGCAAAGAGGTCATCTAGAATAAATGAATTGGAAAATGAATTGCGTGGTTTGGAA TTTCTTTTAAATCAACTTGACCATGTTGAAGAAAGTGGTGTTCCAGCTTTCCTAGCAGAGACTGGCTATGTCTCTAGGCA GGAAATAGAATCTGCCCGTAGTAAAGTTGTGCAATCCTTGCGGAAAACAAAAGGTGAACCAAAGAATGAACAAGACTTAG ATCCAACATTTGTACCCAAGGTGGAAACCAGTAGCTCCCAACCTGCTGAGGCTCCACGTCCTCGTCCTCTTACTAAAGAA GATTTTCAGATTGTTTTTGGGGTTGAAAGGTTCAGATGCCCTGAAATTTTGTTCAATCCAAACTGGATTGGGGTTGATCA GGCAGGACTAGACGAAATGGCCGGGGTCTCATTAAGAAGGTTATCATATAAGGATGAAATACTGGAAGAGAGACTGACTA GTTCGATACTCGTGACTGGTGGAAGTTCTCTTTACCCTGGCATCGTTGAACGTCTCGAAGCTGGAATTCGGATGATTAGA CCCTGCGGATCGCGTATAAAAATAGTTAGAGCTCTGGATCCAGTTATGGATGCATGGCGTGGGGCTTCTGCTTATGCATC AAACCCAGGATTCCATACACAAACTTTCAGTAGGGAGGACTATGATGAAAAGGGTGAAGACTGGCTTCGCGGTTATCAAC TGCAATATTCGTTGTAA
Protein sequence (LotjaGi6g1v0062300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPFISKIQRQTDYHLFSSTTPIVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKATGETVTIVGDHDPALLKYFDCTRS GPRSAFDSNVVYQFEIMEYILDFAFDRMGATGSKIDHPVLITECVCNPVQSRSKMGELLFETYGVPSIAFGVDAAFSYKY NQQQGVCDKDGLALCPGFTTTHVIPFVEGEPIYKGCCRTNIGGFHVTDYFKQLLSLKYPYHMARFTWEKVEDLKMEHCYI AQDYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSRINELENELRGLE FLLNQLDHVEESGVPAFLAETGYVSRQEIESARSKVVQSLRKTKGEPKNEQDLDPTFVPKVETSSSQPAEAPRPRPLTKE DFQIVFGVERFRCPEILFNPNWIGVDQAGLDEMAGVSLRRLSYKDEILEERLTSSILVTGGSSLYPGIVERLEAGIRMIR PCGSRIKIVRALDPVMDAWRGASAYASNPGFHTQTFSREDYDEKGEDWLRGYQLQYSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 17 | 169 | 153 | 1.2E-34 | – | |
| SUPERFAMILY | 18 | 159 | 142 | 4.26E-32 | ||
| Pfam | 19 | 529 | 511 | 3.5E-59 | ||
| SMART | 19 | 534 | 516 | 1.0E-43 | ||
| PANTHER | 20 | 532 | 513 | 2.6E-120 | ||
| PANTHER | 20 | 532 | 513 | 2.6E-120 | ||
| CDD | 22 | 202 | 181 | 3.01685E-8 | – | |
| SUPERFAMILY | 170 | 530 | 361 | 2.71E-54 | ||
| Gene3D | 172 | 202 | 31 | 3.5E-12 | – | |
| Gene3D | 203 | 257 | 55 | 3.5E-12 | – | |
| Coils | 309 | 329 | 21 | - | – | |
| Gene3D | 358 | 427 | 70 | 1.2E-21 | – | |
| MobiDBLite | 359 | 375 | 17 | - | – | |
| MobiDBLite | 359 | 396 | 38 | - | – | |
| Gene3D | 428 | 497 | 70 | 1.2E-21 | – | |
| Gene3D | 498 | 525 | 28 | 1.2E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0062300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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