Transcript — View — Lotus Base

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LotjaGi6g1v0081000.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0081000
Transcript ID	LotjaGi6g1v0081000.1
Lotus japonicus genome version	Gifu v1.2
Description	28S ribosomal S34, mitochondrial; TAIR: AT5G52370.1 28S ribosomal S34 protein; Swiss-Prot: sp\|P82929\|RT34_BOVIN 28S ribosomal protein S34, mitochondrial; TrEMBL-Plants: tr\|I3T7Y6\|I3T7Y6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0081000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:15532601..15536105) extracted from Lotus japonicus Gifu genome v1.2.

GGAAAGACCAAGTACAAGCCATGCATGACGTTGCATGGCTCCAACCCTAGCTCCTCCACGAGTATATAAGCAGGGCTTCT CCTCCTTGTTAAGGTAACGTATTCTTCAACCCTTCATCATAAGCTCATCACCTTCCATTACTGACTTAGGCATCGGAGTC CCTTGCAGGAGCCCCTCCCGGGAACATCCAGCTTGAAGGCTCACCACCTCCCCTCTCCACTCTCCTACCCCTGTCACCGG GTAGTTTGGTCGCTCCTCGATCACCTAAGGTTTGTCCGGTTGAAGGTTCAAATCGGTTGTGTCATCAAACCGGTCTAACT CGAAACGAACAAATCAAACTTTGGGGGGGAAGGGTGAATTGGCTTGGCAAACCGTTGGATGCGAACACAGGCCAAGGGGG GAGCATAAAAAAAGTGTCTTCCACTGGCCACCTGCTATTTAATGACAGCATGTGCACATTGTTTCTTTTATACATTTTTT TAATATACACCGACTCAAGGAGAAAACACAATGGAAATAATGATTTTTTTTGGGTTCAGCCTGATCCATCCCTTCAACCC AAAACAAAAAAAAAACTTGGCCCATCCCCCTCTTCTCACTCACCTCCTCCCTCCTCTCTCTCACGATGCCATTGAGCAGC CCCGCACCCGCACCGCCGTTACAACCGCAGCCTCCTTCCTCGCCGCCGTCACTCGTTGATTTCGCAGTCGCAGGTAAAAG CTTTGATTCCATATTTCCATTGATTCCAAACACCTCTGTTCGTTTGCTGTTTATTGTTTTACTCTTGTTGGGTATTTAAT TCCCAATTTCCCAGATTATCTATATATCCTATGTTTTACTCTCTAGCTGGTTCACAATAACATTATGGTCTTATAATTTT GTTGAAGGATTTGGGTAACAACTGGTTTTTGCTATTAATTTATGCTTTGGTTGCTGTTATTTTTGCTGGGTATACCATTG TGGTTTTATGTTTGAGATGTATATATGGATTAAAAGTAACTAATGAGAATATTAACTTTAGATCATTAAATTTCAAAGAT GACGAGGTTTTTGGTTCATAGAGAAAGTATTGAGAATGTGAATGTTATGTAAAAACCTTTAAGATATGGAAGAGGTGATC AGACTATTTGGGGCTTCTCCTTTGTGTTATTTATTGAGTGAAACTATATTTAAACTGTCCAATATTTATAGTAGTGATCT TTTGTTCTCTTTACTCTTTGGGCAGAGATAGAGAGGATTCTAACCGAAAACAATGGCAAGGGCTTTGGGTAGCACAGTTG ATGGACTTCGAAACTCTTCCTTACTCAGATTTTCACTTAGCTTTATCAGAACTCTTTCTACATCTTCTCCATCATCTACT GCTGCTGCTGCTGCTGCTGATACTAACAAACCTAAGAAATCAAAGCGAAAAAAGAAGAACTTGTTTGAGGTGGCTCAATT CTTACCTACCTGGGGAATAGGCTATCACATGGCCAAGACTCATTGGAAAGAAATTACTTATGAAATCACAAAAATAAATC TCTACAAGGTCTGTTTTATTATAATTTTGTTCTTTACATTCGTTTGTTTTCATCAGAATTCAACTATTTTCCATCCTTAT TTCACTACTATGCCCGGTATTTCCTCCTCGTTTCTCATGAACTACAGACTCTCATTTCTATTTGTCATGTTTTTTCCAGG ATGGGAAACATGGCAAGGCATGGGGCATTGCTCATAAAAATGGTTAGTTAGTCTTGTAACTTACATCAGCATTATTTTTC ACTTTTTATTGTTCTGTTTTTCATTTTATATTTAAGTTTCTTATGCTGTGCAAAGCATATATGCTAACAGGTGATTCAAT AAGAAATCATTACCTCTTTTTATTATATTCATGGGTGGATTTGCGGCACATTCTGTTGGTTGAAGGCAGTCATGAAGTTG GTGCGATGCTATTATTCAATGGGACATTAAGCTAGGCTAAGAATGCCTCTATGAATTCTCATATATCAGTTTGCCTCAAT GGGCATTTAGGACAATCGACGTGCTACCAAACTGACTATAACACTCTATTTTCCATACTCTTTTTTTTGTTGGTTGAAGT CTATGTGGGTCCCACAAAATTGGTAGTGGACACAATGTAATTTAGTGGATCCCACATTAAGTTTAATTAATAAAGGAGAG AGCGTTGAATCGTTGATAGCATTTCTCTTTAGGACAATCAATCTATGATACACTTTACGGTAGCAGAGATTTCCATAATC AGTAAAACACTAGACCAGTGAATAATGTAGGGAGTCTCTCAGTGAGGACTAATGAAGTGATTTGAGTTTCATCTGATTGT ACAATCATCATTCATCACTACTTTTTTTTAGTTGCAAATCAAAACATGTGTGCATCTATAGCATCAGTTGTGTTTTTACA ATATTTTCTGCTCTTGTCCCTGTTTCTGAGCAATATTGTTTGTCAATATTTCTGATGATACTATGTGGTGCTATGGATTC TCAAATTTACTTGAGTTTTTGTTGTTTACGGGTTCACATAAGGAGACTTTCTGTTATTTATTAGATTACGGTTGCAAAAC AAGATGTCAAGAATGAAGTCGAGTAGTTCTTCAAGAATGCTGTTATGTATATCCATTCCACCATGCAAGTGGTTGTTACA GTTCTAAAATAAATTCTGTCACTTTTGATTGAGAAATCAAGTAGGAGCTTGAACATGTTTATGATTTTGAATACTTTCTT CGGTTGTATGTTGTCCACTTTCTCTATTTCGTTCATGTTCCATGTCAAATTGTTTATATCTAGTGTAAATCTCAAATTTT TTGCTTACATGACAATTGTGTATGTGTTGCTTATGTGTGTAATTGTATATGGCATTTGATAAATTCTTGCAATGAAATTT GTCGCAATAAGCACTATGTTCCCAAAGCAAATTGGATTTTGTATGAAGGACTGCATGAGTAATGAGGCATTTTTCAGTGC TTGTTCTCTAGCTTGCTTTGATATCACAGAAATTGTTGCAGGCTTGCCAATTGCAGATCCAAAGAAGATCAGTGGAGTTC ACAAGCGTTGTTGGAAGTACCTCCCAGGTGTTGCAAAAGCATCAGAAAGCTCACCAAACTTAACAAGTCCTACAGACAGT GGCGAAAAAGTTGAAGTCCAAGCAAGTTGATGCTTTCTAGTGACTTTAGGTTCTAGGTTCAACTTGATTTTCATTTGGCA TAGTTGTTTTTGACTGTGGTAGAATTTTAGTCAACCATAAAATATACCTTCACAACCATGTAAGGTTCTCGTGCTTCTTT CTTTTAGATTTTTGATTGAAATGTGGTTTGAGAGATTTAAATTTTAGTAAATCTTTATATTCAACGAGTTGTTTGTGTTA GGTGTAGATTTGGACGTTTGAGTACGAATTTGATTCTGCAACTAAAACCTTGTTCATTGTATGGTATCCGTAAGTGATGC TCATTAAATTCATACGTATAGCATTATCAAGCACACAGTTAATAGAATTGGATTGTGGATTAGGG

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0081000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAAGGGCTTTGGGTAGCACAGTTGATGGACTTCGAAACTCTTCCTTACTCAGATTTTCACTTAGCTTTATCAGAAC TCTTTCTACATCTTCTCCATCATCTACTGCTGCTGCTGCTGCTGCTGATACTAACAAACCTAAGAAATCAAAGCGAAAAA AGAAGAACTTGTTTGAGGTGGCTCAATTCTTACCTACCTGGGGAATAGGCTATCACATGGCCAAGACTCATTGGAAAGAA ATTACTTATGAAATCACAAAAATAAATCTCTACAAGGATGGGAAACATGGCAAGGCATGGGGCATTGCTCATAAAAATGG CTTGCCAATTGCAGATCCAAAGAAGATCAGTGGAGTTCACAAGCGTTGTTGGAAGTACCTCCCAGGTGTTGCAAAAGCAT CAGAAAGCTCACCAAACTTAACAAGTCCTACAGACAGTGGCGAAAAAGTTGAAGTCCAAGCAAGTTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0081000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARALGSTVDGLRNSSLLRFSLSFIRTLSTSSPSSTAAAAAADTNKPKKSKRKKKNLFEVAQFLPTWGIGYHMAKTHWKE ITYEITKINLYKDGKHGKAWGIAHKNGLPIADPKKISGVHKRCWKYLPGVAKASESSPNLTSPTDSGEKVEVQAS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR35316 View details on PTHR35316 Search for proteins/transripts with this domain View external data on PTHR35316	1	154	154	3.0E-68	–
SignalP_GRAM_POSITIVE	SignalP-TM View details on SignalP-TM Search for proteins/transripts with this domain	1	39	39	-	–
PANTHER	PTHR35316:SF1 View details on PTHR35316:SF1 Search for proteins/transripts with this domain View external data on PTHR35316:SF1	1	154	154	3.0E-68	–
Pfam	PF16053 View details on PF16053 Search for proteins/transripts with this domain View external data on PF16053	55	128	74	6.1E-9	IPR032053 Show description in modal box View details on IPR032053 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	132	155	24	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	134	155	22	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003735 View details of GO:0003735 AmiGO InterPro QuickGO	Molecular function	Structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.	Subterm of View details of GO:0005198
GO:0005739 View details of GO:0005739 AmiGO InterPro QuickGO	Cellular component	Mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.	Subterm of View details of GO:0043231 View details of GO:0044444

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0081000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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