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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0090100 |
| Transcript ID | LotjaGi6g1v0090100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein mizu-kussei 1; TAIR: AT5G65340.1 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617); Swiss-Prot: sp|O22227|MIZ1_ARATH Protein MIZU-KUSSEI 1; TrEMBL-Plants: tr|G7J372|G7J372_MEDTR DUF617 family protein; Found in the gene: LotjaGi6g1v0090100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:19335896..19337212) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGTACAACAACCAAGAAACAAATCTAACACCAAGTTACGGCAAAACACATGGCCTACATCGCCACGGTTGGTGGAAG AAGCATGACCAGCAGCGTGACCACAGTGGACTGTCAGAAACAAGTTCGATCATGGCGGCTCCTTCGTTCCCTCATGGAAC TTCTAATCCCCACTTGCAATATTTGCACCTTCCAAGAAGAACAAAATCAAGACGCCAATGAAAAGCGTCTTCACAAACCA TCAACAATGATGGTTTCGGGAGAGGCTCTCATGACCTCCACAACTATCACCGGCACTCTTCTTGGATCCCGCAAGGGAAA AGTCAGCTTCTGTATCCAGGCCAACGCTAACTCTACCGACCCGATTCTCTTCTTAGAGCTTTCGATTCCAACGAGCGTTT TAGCGAAGGAAATGAGAGGAGGGACGCTCAGGATCGTGCTAGAGAGTGCTAGTACTACTACTACTTCTACTACTACTCTA TTTTCGACGCCTCTGTGGACCATGTATTGCAATGGGAGAAGGGTTGGGTATGCGGTTAACCGCAGGCCTTCAAATGCTGA CTTTGAAGCGTTGACCGTGATGCGTTCCGTTGATGTTGGTACTGGTGTAATAAATCATGGCAAGGAATTTCATCATGAAG AGAATGATCAGGAGCTTACGTACCTCAGAGCAAACTTTCAAAGGGTTCGTGGCGGCTCCTCCACCTCCAGTTCCTCCTCC CACTGTGAATCGTTCCATTTGATTGATCCTGAAGGATTCATTGGCCAAGAGCTTAGTATTTTCTTTTTGAAATGCAGAAC ATCAAATAGAATAAGATAAGTTGCATACCTGTTGCATATGTCTTTAGAAGCTGCATAGATTCTTTAGTAATTAAGCGACT GCAAGTGATTAGGGTTAATTCTCTGTATCTCACATTCTCTTTCACAGCTATCAATGAGGCGAGTTGTGGAGCTGTTAGTA TTTGATTCAGTGACTGCAGAGGGGACCTAGTCAAACTTGTTATAACTTATAACCCTAGTCTTTACCCATTATGAGCCAAG GGTTACGACACACACTTTAACCCACACCAGCTACTCAGGCCAGATTAAAAAGTATTACTTAATTAATAAAAGAGCTCAAT GCACCTCGTCAGAATTATGAATTAACCAATTTTTCACAAACAAAATAACAATTGATTGCAGCCCAGAAAACGTTAGATAA ATCAGACATTCTTCCACTTGGGAAAAATCAATTGTATGATTTTATTTTTAAAAAATATGTTTAAAAACAACTCTCGGGTT ATGACTAATTTCTTAAAATGTGGTAACACATAATTCC
CDS sequence (LotjaGi6g1v0090100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTACATCGCCACGGTTGGTGGAAGAAGCATGACCAGCAGCGTGACCACAGTGGACTGTCAGAAACAAGTTCGATC ATGGCGGCTCCTTCGTTCCCTCATGGAACTTCTAATCCCCACTTGCAATATTTGCACCTTCCAAGAAGAACAAAATCAAG ACGCCAATGAAAAGCGTCTTCACAAACCATCAACAATGATGGTTTCGGGAGAGGCTCTCATGACCTCCACAACTATCACC GGCACTCTTCTTGGATCCCGCAAGGGAAAAGTCAGCTTCTGTATCCAGGCCAACGCTAACTCTACCGACCCGATTCTCTT CTTAGAGCTTTCGATTCCAACGAGCGTTTTAGCGAAGGAAATGAGAGGAGGGACGCTCAGGATCGTGCTAGAGAGTGCTA GTACTACTACTACTTCTACTACTACTCTATTTTCGACGCCTCTGTGGACCATGTATTGCAATGGGAGAAGGGTTGGGTAT GCGGTTAACCGCAGGCCTTCAAATGCTGACTTTGAAGCGTTGACCGTGATGCGTTCCGTTGATGTTGGTACTGGTGTAAT AAATCATGGCAAGGAATTTCATCATGAAGAGAATGATCAGGAGCTTACGTACCTCAGAGCAAACTTTCAAAGGGTTCGTG GCGGCTCCTCCACCTCCAGTTCCTCCTCCCACTGTGAATCGTTCCATTTGATTGATCCTGAAGGATTCATTGGCCAAGAG CTTAGTATTTTCTTTTTGAAATGCAGAACATCAAATAGAATAAGATAA
Protein sequence (LotjaGi6g1v0090100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYIATVGGRSMTSSVTTVDCQKQVRSWRLLRSLMELLIPTCNICTFQEEQNQDANEKRLHKPSTMMVSGEALMTSTTIT GTLLGSRKGKVSFCIQANANSTDPILFLELSIPTSVLAKEMRGGTLRIVLESASTTTTSTTTLFSTPLWTMYCNGRRVGY AVNRRPSNADFEALTVMRSVDVGTGVINHGKEFHHEENDQELTYLRANFQRVRGGSSTSSSSSHCESFHLIDPEGFIGQE LSIFFLKCRTSNRIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 247 | 236 | 4.8E-98 | – | |
| PANTHER | 12 | 247 | 236 | 4.8E-98 | – | |
| Pfam | 79 | 246 | 168 | 5.0E-54 | ||
| TIGRFAM | 79 | 247 | 169 | 1.8E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Hydrotropism | Growth or movement in a sessile organism toward or away from water, as of the roots of a plant. |
Expression pattern of LotjaGi6g1v0090100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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