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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0099900 |
| Transcript ID | LotjaGi6g1v0099900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor GT-1; TAIR: AT1G13450.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FX53|TGT1_ARATH Trihelix transcription factor GT-1; TrEMBL-Plants: tr|K7LS14|K7LS14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0099900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21679566..21683976) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATTTATCAGAAAAACCTCGTCCCATTGATTTCTACAAACAGGAAGGGACACGAGACATGATGATAGAGGTGGTATC CAACGCTGAACTTCCACCGCCGCAACACCACCAGCCACCGCCGATGATCCTCGGTGAGAGCAGCGGCGAGGACCCGGAAC TGGAGATCAAGGCTCCGAAGAAGCGCGCTGAGACATGGATTCAAGACGAGACGAGAAGCCTTATTGGGCTTCGTCGCGAG ATGGATGCGCTTTTCAACACTTCGAAATCGAACAAGCATTTGTGGGAACAGATTTCGGCGAAGATGAGGGAAAAGGGTTT CGATCGGTCACCCACCATGTGTACTGATAAGTGGAGGAACCTGTTGAAGGAGTTCAAGAAGGCTAAGCACCATGATAGAG GTGGGAGTGGCTCTGCTAAGATGTCTTATTACAAAGAGATTGATGAGATCCTGAGAGAGAGGAGCAAGTGTGTGCAGTAT AAGAGCCATACTCCTCCTTCCAAAGTTGACTCCTTTATGCAGTTTGCTGATAAAGGTAAATTCATTTCATTTCTTTCTGT TTTCTCTCTTGTGCAATCATATGCTTGTTTGAATTCCCTTAATGTGTCATGCTGCAGAACTTGAAATTGCATATGTTGGA GTTTACTCACTTTAGATGTAATGGTGGTTGTAAGGTTCAAACTTTGTTTGGCACAATGCAATGCATCAAAATTTAATTCT ATGCTTATTGTAGAACCATACACTGGTCTTTGTGTAGGGTGTAATCAAATGCCTTGATAGTAATTAGTTACACCCTACAC AAAAGACCAGTGTTCTCTCAATGCAATGCATCGAACATGTTCGGTAAACAAAGACCAAACAAAGTTCGGTAAACAAATAT CTTGGGAAAATAATTGTTTTGTTTTCAAGTGTTCTATCAAGAAGCTTTTGATTAAAAGCGTTTATTGGCCCCAAAATATG CTAATTCAATCATGTTATTAACAAATTGCGTATGATGAACCTGCATCTAAGTTTGTTAGTAAGTGGGAACACTTGACATC TAATGCAGATGCATAGGCTGTTTGTGTAAAAGAAATTGTTTGTGCATCTTTAGTCAAAACCGAACAGTCTGTCGTTTACC AGCTCTGACAAATTTGTTGTGAAAAGAAGCACTAATTCGCTGTCTTTCTCAATCATTCTTGCTCTGGAATATTTGGCTTT GCTTCTGGTTTTACAGAGCGGATACAATCCGACAAAACATGTAACTGGAAAACCTGATTGTCATAGTTGTTACCGTTAAA TGAACTACATATCCCTTATCCCCACAAATTTTGTCTCAAAAAAGTGCATCCTGGTCAAAATTGCTGATTTGACATGCATT AATTGGTTTTTACACATTTCATTTTCACTCTTATTGCCTTGTAAAACAGAAATATGACGGAGTAATTGCCGTGTATAACT TTAGGAAGTTTCCTCGCAAAATACATTTATGTTTTGGTTGATACTCTTCCCTTAAGTTGTGAGCCTCAGTCTATATCGAT TGATCTTAGGATTGATTATGATAGATGTGTTATTTATCTCTATCATGGTAGTTAGTATCGCATGTATTTCGCTATACGAT GCGGAATCAACCCAGAACGATGCGACTTGTGCTTATGTATCTTTTTGTGTCTGAATCACACACCCTATCGCCTGAATCGT ATCTCCTGGGTGTATTGTCCGATTCGAGCAGCTACACAGAGCAGCCAAATTCAGGGTCGGGTCACGCGACCCGGTTTCCA TTTTGGCCTTTCTTTTGTTTCTTTTGCAATTTTTCTTTTAAAACCTGTTCAGATACTCGTGCAGTATTTCTAAACCCTTT GGCCCCATTAACCATTATAGAAACCCTAAGGCACTGCCCTGCTCCTATCTTTCATGCGCACGAGAAAATTCTGGTCTCCC ACCTCTATTTTTTTCAGTGTTCGGCCACCGCCCTCTCTTGTTCATCGCACCTTGAAGTCCCTTACGCGTGCAACAGTAAT TTTTTTCCCTTTCCTATTCTCATTTGGTACGGTTTGGTTATTTGGTTCATCACACCTTGCTTAGCCTCATTTGGTACGGT TTCAACATTCATAATGGGACAGCCAGAGGAAGAAAGTAGAGAGAGCCAAAGACATCACACATTCATAACTGGTTTGATTT ATATTATGATTATTTAATATTTACTAGGATCCAAGTATAAGCAAAGTAAATTGCATTTTGTCATTTTATTGATATTTTTT AGAGGTGTTGAACACTTGAACTTTGTGTAACCAGCAACTATTTTTCTTCTTTTGGCTTCGATTTTTAATTATTTTGAAGT ATATTTATATGGTATATCAGATTGTTATTCAATTCATGACTTAATTATTTTGTATCTGTATCTTACGATACATTAAACGA TACGTTTCACAATTCAAAAATTAGGGTCTTCCAATACACGATACGTATCTCAATTTGATAACAATTATCTCTATGCATTT GATTTTTGAAGCACAATATCTTATCACACTCTTGTGAAGCCACAGTAACTTTTCCTAGGTTATCATTTGCAAATGTCATT TGGATGTCTGCCAGTTATAATATCACTCATTTTGACTTTGGGAACAGTTACTTGACTGGTTATGTTGCTGTGCAGGTATT GATGATACCAGCATTTCTTTTGGGCCAGTTGAAGGTATGTCATTGTAATACAACTTTCAGTTTCCCATTTTCTATTACTG ATGTTTTATCTGTTTTAGGGATATATATATCTCTGATTTTAGGGAGAATGGGGATGTTGTTGTTGTTATTGTTAGTAGAT TGTGGACAGAGAACATTCTCTGTAGGAGAGACTTTATCTCTAGGACAGCAAGTAAAATTGCTGTATATATGTTATTTCTG TTCTGTTTGATACATATTTCATCAGTTAACTTCTGGTGTTGTATCACATGCATTGCATGCCAAATTAACCCCTACTATGA CAGCTTTTAACCATTCAGATATTGCTTTGTCTTGTAATTGTTTCCATATAATGAATGGGTAGAGTGGGATAAATAATGAA ATGCTACTTTAAATAGCTGGTTCAAATGAGAATTCAAATGCTGTACTATGTAGGGATTTTCTGCTTATTGTGTTTTACTA GGAATTCACTCTGTTGATGTGCAACCTGGTAGTTATTACTTCATATTGTGGTAAAGTATTTTTGCTTTGTACTGCTGATA GTTTATCAGTTTCTCTAAAATATTGTCTAGTTCATCAAGTGTATGCATGACGAGGTAAGTATTTGTTCATATAGTGGGAG GTAGTATTCATAATCATACTGCTTACTGCTTACAATTGATTAGTTTTCTTAAAATTCAAATGTCTGCATTTTGCAGCAGT TAAATAGCCACAGTCGGTATGTGATACTAGTTATCACTATTTTAGCATTTTGGAAATTGAAAATGAAACTCTGACCAACT CGGGAGAGTGTTCATTGATAAGAATTTTGATATGTCTGATCTCATTTAGATGTTTATATTCCTTCTTTCCAAAGTGGTAG TTGCCACTTCATGGCTCTCATAATTCTCATCTATTTGGCATTTAGCTGCTGGAAGACCAACACTCAATCTTGAGAGAAGT TTAGATCATGATGGACATCCTCTTGCCATTACCGCAGCTGAGGCTGTTGTGGCAAGTGGAGTCCCTCCTTGGAATTGGAG AGAAACAGAAACTCCTGGAAATGGTAAGCTGCTGATGCTTTCTCCCCACTTTTTTCTTATAGCTTAATTGCTTTCTTATT TCTGATACCAATTCTTCCTATTTTTTGCAGGTGGTGAAAGTCAGTCATGTGGAAGGGTTATTTCAGTCAAGTGGTGTGAT TATACGAGACGAATAGGTATTGACGGCACCCCAGAAGCCATCAAGGAGGCAATTAGGGCTGCTTTTCGGTTGAGAACTAG ACGTGCATTCTGGTTAGAGGATGAGGACCAGATTATCAGAAGTATTGATCGTGACATGCCTATAGGCAATTACACTCTTC ACCTTGATGAAGGTATGGCTGTTTATTCTTCTACCTAATTTGTGCAAAATTTTATGGTTTTTTTCTTTTCTTTTACTGTC TAGGAGCTTGTGTAGTTAGGTTCTTGCTGAGCTTGTGGAACCTACATGGTGACTAATTATTAAACATGCTTCCTTCTCTT CCTCTTCCTTTATTGGAAGTGTGGTTAAACAGTAAATTATCATTGCAGGAATGGCTATTAAAGTATGCCTTTACGATGAG CCTGACCATATTGCTGTGCATACTGAAGAGAAGATATTTTACACCGAAGATGATTACCGCGATTTTCTGACGCGTCGTGG CTGGACTTGTCTAAGAGAATTTGACGGCTATAGAAACATTGACAATATGGATGATCTTCGACCTGGTGCCATATATCGTG GGGTGAGTTGA
CDS sequence (LotjaGi6g1v0099900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTTATCAGAAAAACCTCGTCCCATTGATTTCTACAAACAGGAAGGGACACGAGACATGATGATAGAGGTGGTATC CAACGCTGAACTTCCACCGCCGCAACACCACCAGCCACCGCCGATGATCCTCGGTGAGAGCAGCGGCGAGGACCCGGAAC TGGAGATCAAGGCTCCGAAGAAGCGCGCTGAGACATGGATTCAAGACGAGACGAGAAGCCTTATTGGGCTTCGTCGCGAG ATGGATGCGCTTTTCAACACTTCGAAATCGAACAAGCATTTGTGGGAACAGATTTCGGCGAAGATGAGGGAAAAGGGTTT CGATCGGTCACCCACCATGTGTACTGATAAGTGGAGGAACCTGTTGAAGGAGTTCAAGAAGGCTAAGCACCATGATAGAG GTGGGAGTGGCTCTGCTAAGATGTCTTATTACAAAGAGATTGATGAGATCCTGAGAGAGAGGAGCAAGTGTGTGCAGTAT AAGAGCCATACTCCTCCTTCCAAAGTTGACTCCTTTATGCAGTTTGCTGATAAAGGTATTGATGATACCAGCATTTCTTT TGGGCCAGTTGAAGGTGGTGAAAGTCAGTCATGTGGAAGGGTTATTTCAGTCAAGTGGTGTGATTATACGAGACGAATAG GTATTGACGGCACCCCAGAAGCCATCAAGGAGGCAATTAGGGCTGCTTTTCGGTTGAGAACTAGACGTGCATTCTGGTTA GAGGATGAGGACCAGATTATCAGAAGTATTGATCGTGACATGCCTATAGGCAATTACACTCTTCACCTTGATGAAGGAAT GGCTATTAAAGTATGCCTTTACGATGAGCCTGACCATATTGCTGTGCATACTGAAGAGAAGATATTTTACACCGAAGATG ATTACCGCGATTTTCTGACGCGTCGTGGCTGGACTTGTCTAAGAGAATTTGACGGCTATAGAAACATTGACAATATGGAT GATCTTCGACCTGGTGCCATATATCGTGGGGTGAGTTGA
Protein sequence (LotjaGi6g1v0099900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLSEKPRPIDFYKQEGTRDMMIEVVSNAELPPPQHHQPPPMILGESSGEDPELEIKAPKKRAETWIQDETRSLIGLRRE MDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGGSGSAKMSYYKEIDEILRERSKCVQY KSHTPPSKVDSFMQFADKGIDDTSISFGPVEGGESQSCGRVISVKWCDYTRRIGIDGTPEAIKEAIRAAFRLRTRRAFWL EDEDQIIRSIDRDMPIGNYTLHLDEGMAIKVCLYDEPDHIAVHTEEKIFYTEDDYRDFLTRRGWTCLREFDGYRNIDNMD DLRPGAIYRGVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 192 | 165 | 9.9E-161 | – | |
| PANTHER | 28 | 192 | 165 | 9.9E-161 | – | |
| ProSiteProfiles | 58 | 122 | 65 | 8.351 | ||
| CDD | 64 | 129 | 66 | 1.78174E-28 | – | |
| Pfam | 65 | 150 | 86 | 1.3E-20 | – | |
| Gene3D | 66 | 128 | 63 | 3.7E-25 | – | |
| PANTHER | 194 | 332 | 139 | 9.9E-161 | – | |
| PANTHER | 194 | 332 | 139 | 9.9E-161 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0099900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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