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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0105200 |
| Transcript ID | LotjaGi6g1v0105200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor bHLH93-like protein; TAIR: AT3G56220.1 transcription regulator; Swiss-Prot: sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1; TrEMBL-Plants: tr|A0A151UA19|A0A151UA19_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0105200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:23244430..23245949) extracted from Lotus japonicus Gifu genome v1.2.
CAAATTATTCAGATTTCTTTGTATAAAGTTTTCTTGTGTGAGAGAGAGTGAGAAAATGGTCTCCAGGGGTCACAAGAGAA CAGCCATGTACAGGAACCTACAACTTCTTCGTTCAATCTCATGCTCTCATTCGGTGATTACTCTGAAACATCTTTATTTT CTCTGTTTGCATGCAGTTTCTCCTCATTTTTAATTTCTGGATGAACTTTTGTTACATGCAAAATTAATCCATTTTAAAAG CAAAAAAGCTTAATTTCCATTCAATTTCTATCAGTCTCTTCCTCTTATCAAATACATTTGTTCCCATTAACCAAAACATG ATCTAAGGAGACTTCTCCACTTGATGTTAACATTTGAATAGAAACACTCACTTTGAAATATCAATCCTTTTCTTGCTTAT GATTTTGCCTCTAAATGCATATTAATATGCTTCATGAACTGAAGATCACATTGAGATATGGTGGAATGATTTCCATGTTT ATACAGCGGCGCCGTAAAGCCTCAGTTTTATTGGATGTATCAGAGTATATACAAGGTTTAAAGCAAAAGCTGCAAGAATT GAACCAGTTACAAGTTGCAAAAGCTCAGAAAATCATTGATTATGATCCAATGCCTAAGGTAATCAACTATACTTCACATT ATTAAATTCAGTTGAAAGGGAATTCAGAATTCTTCTAGCCAGATAATTTTAAATTCAGTGAAGTGAGGGAACTTCAGCCG TTCGATCAAAGATACCATTAAGATATAAAGATATTATTTCAAAGGTTTAATAATCTCTTTAAGTCTGAGTCGTCTCATTA GTCAAATGATTGAGAACCCCTGACTGCATCGAATGCAGAATTTCATGACTACAATGAACTGGGTTCAAGATTCTTCTGCC TAGTAGCCTAATAGTAGATAATGATCATAATTGATTAATTTTTCATTGTTATTAATGATTTTGCAGCTTAAAGTTGAACC ACAAGAAGAAGGCTTTGTGATTAAGGTGCTGAGTGAAAGGAGTTGTCAAGGGTTGCTGGTGTTCATATTAGAAGCCTTTG AAGAGCTGGGTCTTGATGTGCTCCATGCTCGGGTTTCTTGTGCAGACATCTTCTCTCTAGAAGCTGTTGGAAACAAAGTA ATGAATGATGTGACATACACACTCACATGCATAATTATCAATTAAGGAAACCAGTTCCTTTCATTTGTACTGAATGAATG ATGAAACATTTTTGGTGAAGCCACTGACACGATTAATTGCTTTATGGATGTTTCAGGAGAACAATCAAGATACTCGTCCT TTGGATGCACATATGGTTGAAAAAGTAGTGTCTCAAGCTATTCAAAATTGGAAGGAAGTTACACAGAAATTATGATCAGA AAAAACTACTGTCCCCAATTAGAAATCTTGTGTTTACTTGATCAGTTTACTCTTTCTTTGTTACCAAAATGTTTCATATT AGATATAAATAGATCCATGTAGAAGTTTGACTTTCTGATGAATATCTTATTTAAATGATTCTAGAAAAACTTATATTAAA
CDS sequence (LotjaGi6g1v0105200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCTCCAGGGGTCACAAGAGAACAGCCATGTACAGGAACCTACAACTTCTTCGTTCAATCTCATGCTCTCATTCGCG GCGCCGTAAAGCCTCAGTTTTATTGGATGTATCAGAGTATATACAAGGTTTAAAGCAAAAGCTGCAAGAATTGAACCAGT TACAAGTTGCAAAAGCTCAGAAAATCATTGATTATGATCCAATGCCTAAGCTTAAAGTTGAACCACAAGAAGAAGGCTTT GTGATTAAGGTGCTGAGTGAAAGGAGTTGTCAAGGGTTGCTGGTGTTCATATTAGAAGCCTTTGAAGAGCTGGGTCTTGA TGTGCTCCATGCTCGGGTTTCTTGTGCAGACATCTTCTCTCTAGAAGCTGTTGGAAACAAAGAGAACAATCAAGATACTC GTCCTTTGGATGCACATATGGTTGAAAAAGTAGTGTCTCAAGCTATTCAAAATTGGAAGGAAGTTACACAGAAATTATGA
Protein sequence (LotjaGi6g1v0105200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSRGHKRTAMYRNLQLLRSISCSHSRRRKASVLLDVSEYIQGLKQKLQELNQLQVAKAQKIIDYDPMPKLKVEPQEEGF VIKVLSERSCQGLLVFILEAFEELGLDVLHARVSCADIFSLEAVGNKENNQDTRPLDAHMVEKVVSQAIQNWKEVTQKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 157 | 157 | 2.6E-78 | – | |
| PANTHER | 1 | 157 | 157 | 2.6E-78 | – | |
| Coils | 34 | 61 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0105200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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