Transcript — View — Lotus Base

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LotjaGi6g1v0126900.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0126900
Transcript ID	LotjaGi6g1v0126900.1
Lotus japonicus genome version	Gifu v1.2
Description	UDP-glycosyltransferase; TAIR: AT4G27570.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp\|Q9T081\|U79B3_ARATH UDP-glycosyltransferase 79B3; TrEMBL-Plants: tr\|I1KDP9\|I1KDP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0126900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:32719427..32721906) extracted from Lotus japonicus Gifu genome v1.2.

CTTGTATTCCGAAAAGAAAAAAAGAGAGCAATTGCTTCTAAACAAAATGACTGTATCACACACCTCACAGCTTCACATAG CCATGCTTCCATGGTTTGCCACCGGTCACATGACCCCATTTCTTCATCTCTCAAACGAGTTTGCCAAAAGAGGTCACAAA GTCTCTTTTTTCCTACCCCAAAAAGCACTGCTTGAACTGCAACACATGAATTTTTACCCACACCTCATCACCTTCCACAC CCTCACCGTTCCACACGTTGATGGTCTTCCTCTTGGCATTGAGACTGCCTCTGAGATTCCCATTGGTATCAACAATCTCC TTCAAATAGCAATGGACAAGACCTCTGACCAAGTGGAGCTAGCACTGAGCAAAATCAAACCCGACTTTTTGTTCTTTGAT CATGCACATTGGATACCTGAAATAGCAAACAAGTTTGGTATCAAAACTATTTTCTACCATGTAATGTGTGCAGCCAGCAT TGCTATAAAGTTCGTGCCTGCTAAGAATGTTCCTAGGGACAGACTCATGACGTTGGAGGAGTTGGGCCAACTACCAGCTG GGTACCCTTCTTCAAAAGTTGTGCTTCTCGGTCCTGAAGCCCTACCAATGGATTACATACAAATATCATTCGGAGAAGGT ACTAATTATTCCAAAAAAATTTGAGTTATGTACATGAGTAATTATATTTCTAACACACTCATTACTCAAGATCCCACTTG GACTTAAAGCATGAACAATTCGCATGCCCACATACCATCTTGACCGTATCCATAATTTTTTCTTTGGGGCCAAAATAAAA TAAGGATTTAATTTATGCAAGTTCTTTGGAAACCACTTAAAATGGAGGGGTTCCATCCCTTTTGCTTTGATTTTCCTTGA TTTCTTTTATAACTTTTTTTAAAATTTGCAACTCAATCCTTCATAGTCTAAATAATAAACTGAAATGTATCAATCCCTAG TATTTTCAAGGGTATTGGAGCAATGCCCTTTACTTTATATGCAGTGTAAATAGTTTTACATATGCATCCAATTGCATTTC TCCATTTTCATTTTTTAAATTTTTAAAATTTAAATTTAATTATGATATGACAAATTGATGAATTCTAATTAAATTGTAAA ACATTTTTACACAGTTAGTACATAATAATTAAACTCGATAAAATAATAAAATAATTATAAAACCTTTGGAGGAGCCGAAC TAAGAAATTAAAATCACATTGTCAAGCATCCTTTAGATAGACCTCTTCCTACCGTGTGCTTGATCACTTGGTAATAGAAC TTTAATACTATGTTATAAACTAGTTATCTCAAAAGTTTAGGTTTTATTACAGGTAACATGACCTTTCATGACCGCCTCAC AATGGCGTTGAAACAAAGTGATGCCATAGCCATCCGAACCACCAGGGAGACCGAAGGTATCTTCTGTGACTACATTGCTG AACAATATCAGAAACCGGTGCTTTTGACGGGGCCTGTGTTGCCTGAGGAGACTTATAAGGGAGAGTTAGAAGCACATTGG GCTAAGTGGCTCGATGGGTTTGAGCCAAGGTCCGTCGTATTCTGTGCATTTGGGTCCCAAGTAAACTTGAAAAAAGAACA ATTCCAAGAGCTATTGCTAGGATTTGAGCTTTCAGGATTTCCTTTTTTCATCGCCTTGAAGACCCCATTAGGTTGTGTAT CTGTGGATGAGGCAATACCGGAAGGTTTTGAAGAGAGGGTGAAGGGAAGAGGAGTTGTTTCTAGGGATTGGGTTCAACAA CCATTGATTTTGAAGCACCCGTCAGTCGGGTGCTTTGTGAGTCACTGCGGATTCGGTTCTATGTGGGAATCTTTGCTTAG TGATAAACAGATAGTGCTAGTTCCTTTCCTTGCGGACCAAGCATTGAATGCCAAGCTACTTGTTGAGGAGATGGAAGTAG CAGTTTCTGTGGAAAGAGGAGGGAATTGGAGGGATTTAATCACAAAAGAAAGCTTCTGCAAAGCTATTAAGTCTGTGATG GATGAAGGAAGTGATTTGCCTGCTAGGCTGAAGGACAACCATGCCAAATTTAAGGAATTGTTGGGGGATCCAACGCTGAT GAATGGCTACATTGATAAATTTATCCAGGATCTTCAAAAGCTTCCAAAGTGATAGATACAATATTAAACTTTAAGTTTGT TTGTTAGTTATGTGTTTTTTTATAATAAAGGGGGCCAATTTGTCGATTATGTGGCTTTTGGGCCTCTTGTTGTTGGGTTT GGGTTGTCTTGGCTTTGAGCCTTTTAGGAATTTTGGGGATTTTCTTGTGGTTTGGTTGTTGGTTGCTTTTCCGTGGCAAG GTTCTGTGAGTTCTTTTGCTTCGTCTCATCTTTGAAGGATCGTACTTTTCCATTAATTATTAATAAACTCTTTTGGTCTC TTAAAAATAAAGGGGGCAAAAGCCCCACCATGTTAGTTATGTTTTTGCATAAGCTTTTGTTTATTAGAGTTTGCTCAACT

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0126900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTGTATCACACACCTCACAGCTTCACATAGCCATGCTTCCATGGTTTGCCACCGGTCACATGACCCCATTTCTTCA TCTCTCAAACGAGTTTGCCAAAAGAGGTCACAAAGTCTCTTTTTTCCTACCCCAAAAAGCACTGCTTGAACTGCAACACA TGAATTTTTACCCACACCTCATCACCTTCCACACCCTCACCGTTCCACACGTTGATGGTCTTCCTCTTGGCATTGAGACT GCCTCTGAGATTCCCATTGGTATCAACAATCTCCTTCAAATAGCAATGGACAAGACCTCTGACCAAGTGGAGCTAGCACT GAGCAAAATCAAACCCGACTTTTTGTTCTTTGATCATGCACATTGGATACCTGAAATAGCAAACAAGTTTGGTATCAAAA CTATTTTCTACCATGTAATGTGTGCAGCCAGCATTGCTATAAAGTTCGTGCCTGCTAAGAATGTTCCTAGGGACAGACTC ATGACGTTGGAGGAGTTGGGCCAACTACCAGCTGGGTACCCTTCTTCAAAAGTTGTGCTTCTCGGTCCTGAAGCCCTACC AATGGATTACATACAAATATCATTCGGAGAAGGTAACATGACCTTTCATGACCGCCTCACAATGGCGTTGAAACAAAGTG ATGCCATAGCCATCCGAACCACCAGGGAGACCGAAGGTATCTTCTGTGACTACATTGCTGAACAATATCAGAAACCGGTG CTTTTGACGGGGCCTGTGTTGCCTGAGGAGACTTATAAGGGAGAGTTAGAAGCACATTGGGCTAAGTGGCTCGATGGGTT TGAGCCAAGGTCCGTCGTATTCTGTGCATTTGGGTCCCAAGTAAACTTGAAAAAAGAACAATTCCAAGAGCTATTGCTAG GATTTGAGCTTTCAGGATTTCCTTTTTTCATCGCCTTGAAGACCCCATTAGGTTGTGTATCTGTGGATGAGGCAATACCG GAAGGTTTTGAAGAGAGGGTGAAGGGAAGAGGAGTTGTTTCTAGGGATTGGGTTCAACAACCATTGATTTTGAAGCACCC GTCAGTCGGGTGCTTTGTGAGTCACTGCGGATTCGGTTCTATGTGGGAATCTTTGCTTAGTGATAAACAGATAGTGCTAG TTCCTTTCCTTGCGGACCAAGCATTGAATGCCAAGCTACTTGTTGAGGAGATGGAAGTAGCAGTTTCTGTGGAAAGAGGA GGGAATTGGAGGGATTTAATCACAAAAGAAAGCTTCTGCAAAGCTATTAAGTCTGTGATGGATGAAGGAAGTGATTTGCC TGCTAGGCTGAAGGACAACCATGCCAAATTTAAGGAATTGTTGGGGGATCCAACGCTGATGAATGGCTACATTGATAAAT TTATCCAGGATCTTCAAAAGCTTCCAAAGTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0126900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTVSHTSQLHIAMLPWFATGHMTPFLHLSNEFAKRGHKVSFFLPQKALLELQHMNFYPHLITFHTLTVPHVDGLPLGIET ASEIPIGINNLLQIAMDKTSDQVELALSKIKPDFLFFDHAHWIPEIANKFGIKTIFYHVMCAASIAIKFVPAKNVPRDRL MTLEELGQLPAGYPSSKVVLLGPEALPMDYIQISFGEGNMTFHDRLTMALKQSDAIAIRTTRETEGIFCDYIAEQYQKPV LLTGPVLPEETYKGELEAHWAKWLDGFEPRSVVFCAFGSQVNLKKEQFQELLLGFELSGFPFFIALKTPLGCVSVDEAIP EGFEERVKGRGVVSRDWVQQPLILKHPSVGCFVSHCGFGSMWESLLSDKQIVLVPFLADQALNAKLLVEEMEVAVSVERG GNWRDLITKESFCKAIKSVMDEGSDLPARLKDNHAKFKELLGDPTLMNGYIDKFIQDLQKLPK

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SUPERFAMILY	SSF53756 View details on SSF53756 Search for proteins/transripts with this domain View external data on SSF53756	3	456	454	1.13E-86	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	3	263	261	3.3E-32	–
CDD	cd03784 View details on cd03784 Search for proteins/transripts with this domain View external data on cd03784	9	446	438	2.67448E-58	–
PANTHER	PTHR11926 View details on PTHR11926 Search for proteins/transripts with this domain View external data on PTHR11926	223	389	167	5.4E-17	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	264	441	178	2.2E-49	–
Pfam	PF00201 View details on PF00201 Search for proteins/transripts with this domain View external data on PF00201	335	422	88	3.3E-10	IPR002213 Show description in modal box View details on IPR002213 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00375 View details on PS00375 Search for proteins/transripts with this domain View external data on PS00375	337	380	44	-	IPR035595 Show description in modal box View details on IPR035595 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016758 View details of GO:0016758 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring hexosyl groups	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016757

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0126900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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