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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0131600 |
| Transcript ID | LotjaGi6g1v0131600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0503 protein, chloroplastic; TAIR: AT5G58930.1 hypothetical protein (DUF740); Swiss-Prot: sp|Q9SS80|U503A_ARATH UPF0503 protein At3g09070, chloroplastic; TrEMBL-Plants: tr|A0A0L9VBY3|A0A0L9VBY3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0131600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:37860927..37863165) extracted from Lotus japonicus Gifu genome v1.2.
CCTAACTAGGGGTTCACTGTTGATTGATCATACATGAAGGAATGGTCCTTATTAACATGGGAAAATGTCACCTCATGCCT CTTACCCTCTTCTTCCTGATTACTTCTCTCACACTCACAACACACACTGAGTGAGAGTGCCTTCACTTCACTTCATTTCC ACTGTAAACTATCTACCATGCCCTTTAACTCTCCCCTATGACTTCCAAAACGCCCCGTTTAACCACCTGTCACCGCCACC CTTCCCAACCCCTCACCGGTTTCTGCGCCTCCTGCCTCCGCGAACGCCTCGCCGGCATCGAATCCACCTCCTCCGCCTCC TCACCCAAGCTCCGCCGCACCAAATCTTGCTCCGGCAGCGGCCCCGACCCTCATTCCTCCTCCACCGCCGTCCTCGAGCC TCGCCGCAAGTCATGCGCGGCGGCGGTACCGCCGCGGAACACGCTGTGGGATCTCTTCAGTCGAGACGACAAGCCTCCTC GAAATGTCGATTTGGGAAACTCTGGTCAGGAAATCAGGGATTGCGACGGCGTCGGCGAAGGGATTAGGGTTTGCGTTGAA GATGATGAAGAGACGAAGACGATGAAAGAGTTCATAGATCTCGAATTGAAGAGTAAGAAGAGCTCAGGGAGAGACTTCAG AGAGATTGCTGGGAGTTTCTGGGATGCAGCTTCTGTGTTCAGCAAGAGGTTGATGAAACGGAGGCGGAAGCAGAGTTTGA AGAGAAACCTTGCCGGCGGTGGTAGAGGCGGTGTAGGTTTGACAAGCGTGGAGGTTGCTAATCAAGGGGGAAGAAATTTG AGAGAGACACAATCCGAGGTTGGAGAATACGGTTTTTCGTTGGGTAGAAGATCATGCGACACTGATCCAAGGTTGTCTGT TGATGATCCTCGGTTTTCGTTTGAAGCGCCTCGAGCTTCTTGGGATGGTTATTTGATTGGGAAGACATATCCAAGGCTTT CCCCAATGGTTCCATTCAATGGGGTTGTAGATGGTATGGTTTTGGTTGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGTG AATTTGGAAAATGGGGAAGGGCATTGTCCTGGTGGGTCAGCTGAGACAATGCATTACTATTCAGATAGGAGGAGGAGGAG TTTCGATACATCAAACTCTCGTAGGAAAATGGTGACAGGGGATAATGTTGATGACTTGAGAGTGGTATCTAATGCCAAGG TTTCACCTGCTACCACTGAGTTATTCTATGGGGCAAAGGTTCTGATCACTGAGAATGATTTGAGGGATGCAAATTTGAAA TCCAGAAATAGTGTTCAATCTGATTGTGTGATAGCGTCTGCTTCTAAGGATGCTTGTGATGTTGGAATTGGGGTTGGTCA AAAGGGGTTGAAAAAATTCCAGAAGTGGGGCAGGTTGTGGACTAAGTTAGGGTTAGTACATAGGAGGAAGGAAGGTAAAT TGGGGAAGGAAGAGTGTGGTACTGGTGATATAGATAATAAGCCAATTGCAGAGCCATGGCAGAAGCTGAGAAGGGCGGTT AATGGACAAGCAAGTGAGTCAGTTAGCGAGAAGCTTATTCGCAGCTATAGTGTTAGTTGTAGAAATCAGTGTAGTTCAGG CGGTTTAGTCAATGGCCTTGGGGTTCCTGAGACCAAAGGCAATGTTTTGAATGGACGACAAGAGTTGATGCTTCCAAAGA ATCGCAGTGTTAGACACTCGTCAAATAATGTTGATGCCGGGTTGTTAAGGTTCTATTTGACACCATTGAAGAGCTATAGG CGAAGCAGGTCTGGAATGAGTAGCTTAAAGGATTCGTTTTCAACAGCCAGGAGTTCTTGTGATTTGTAAAGCTGTAACCG TTGAAAGTAATCTGGTTGTATTAACATATGTAATGTAATTGTTTGTTTCCATGAGGTAAAGTGCATCACATTGTTAGGTT CTGGTTGCAGTTGTTCTCATGATGGTGGTAGAAGAATAAAGCATAGCATTCATACCATGATCATTACATGATATTATTGA CATAGTAAATTTCTATTGCAACACTGCGAGGAGTAAATCACTTGAAACACTTTATTTTACTAGATTTTATTGCAAACAAT CTTTTGGATCTGGGCAACATGTAGGTTAATTTTCAAAGTTTGTTCAGGTAGTAGAGAGTGTGCTTTAAATTCCAGTTTCT GGTTCAGGTATGCTATTGTTATATGAGAAAAATGATTATGCACCAGCTACTAAATTATATTAGTATGAATCTAGTTTTC
CDS sequence (LotjaGi6g1v0131600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTCCAAAACGCCCCGTTTAACCACCTGTCACCGCCACCCTTCCCAACCCCTCACCGGTTTCTGCGCCTCCTGCCT CCGCGAACGCCTCGCCGGCATCGAATCCACCTCCTCCGCCTCCTCACCCAAGCTCCGCCGCACCAAATCTTGCTCCGGCA GCGGCCCCGACCCTCATTCCTCCTCCACCGCCGTCCTCGAGCCTCGCCGCAAGTCATGCGCGGCGGCGGTACCGCCGCGG AACACGCTGTGGGATCTCTTCAGTCGAGACGACAAGCCTCCTCGAAATGTCGATTTGGGAAACTCTGGTCAGGAAATCAG GGATTGCGACGGCGTCGGCGAAGGGATTAGGGTTTGCGTTGAAGATGATGAAGAGACGAAGACGATGAAAGAGTTCATAG ATCTCGAATTGAAGAGTAAGAAGAGCTCAGGGAGAGACTTCAGAGAGATTGCTGGGAGTTTCTGGGATGCAGCTTCTGTG TTCAGCAAGAGGTTGATGAAACGGAGGCGGAAGCAGAGTTTGAAGAGAAACCTTGCCGGCGGTGGTAGAGGCGGTGTAGG TTTGACAAGCGTGGAGGTTGCTAATCAAGGGGGAAGAAATTTGAGAGAGACACAATCCGAGGTTGGAGAATACGGTTTTT CGTTGGGTAGAAGATCATGCGACACTGATCCAAGGTTGTCTGTTGATGATCCTCGGTTTTCGTTTGAAGCGCCTCGAGCT TCTTGGGATGGTTATTTGATTGGGAAGACATATCCAAGGCTTTCCCCAATGGTTCCATTCAATGGGGTTGTAGATGGTAT GGTTTTGGTTGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGTGAATTTGGAAAATGGGGAAGGGCATTGTCCTGGTGGGT CAGCTGAGACAATGCATTACTATTCAGATAGGAGGAGGAGGAGTTTCGATACATCAAACTCTCGTAGGAAAATGGTGACA GGGGATAATGTTGATGACTTGAGAGTGGTATCTAATGCCAAGGTTTCACCTGCTACCACTGAGTTATTCTATGGGGCAAA GGTTCTGATCACTGAGAATGATTTGAGGGATGCAAATTTGAAATCCAGAAATAGTGTTCAATCTGATTGTGTGATAGCGT CTGCTTCTAAGGATGCTTGTGATGTTGGAATTGGGGTTGGTCAAAAGGGGTTGAAAAAATTCCAGAAGTGGGGCAGGTTG TGGACTAAGTTAGGGTTAGTACATAGGAGGAAGGAAGGTAAATTGGGGAAGGAAGAGTGTGGTACTGGTGATATAGATAA TAAGCCAATTGCAGAGCCATGGCAGAAGCTGAGAAGGGCGGTTAATGGACAAGCAAGTGAGTCAGTTAGCGAGAAGCTTA TTCGCAGCTATAGTGTTAGTTGTAGAAATCAGTGTAGTTCAGGCGGTTTAGTCAATGGCCTTGGGGTTCCTGAGACCAAA GGCAATGTTTTGAATGGACGACAAGAGTTGATGCTTCCAAAGAATCGCAGTGTTAGACACTCGTCAAATAATGTTGATGC CGGGTTGTTAAGGTTCTATTTGACACCATTGAAGAGCTATAGGCGAAGCAGGTCTGGAATGAGTAGCTTAAAGGATTCGT TTTCAACAGCCAGGAGTTCTTGTGATTTGTAA
Protein sequence (LotjaGi6g1v0131600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSKTPRLTTCHRHPSQPLTGFCASCLRERLAGIESTSSASSPKLRRTKSCSGSGPDPHSSSTAVLEPRRKSCAAAVPPR NTLWDLFSRDDKPPRNVDLGNSGQEIRDCDGVGEGIRVCVEDDEETKTMKEFIDLELKSKKSSGRDFREIAGSFWDAASV FSKRLMKRRRKQSLKRNLAGGGRGGVGLTSVEVANQGGRNLRETQSEVGEYGFSLGRRSCDTDPRLSVDDPRFSFEAPRA SWDGYLIGKTYPRLSPMVPFNGVVDGMVLVEEEEEEEEEEVNLENGEGHCPGGSAETMHYYSDRRRRSFDTSNSRRKMVT GDNVDDLRVVSNAKVSPATTELFYGAKVLITENDLRDANLKSRNSVQSDCVIASASKDACDVGIGVGQKGLKKFQKWGRL WTKLGLVHRRKEGKLGKEECGTGDIDNKPIAEPWQKLRRAVNGQASESVSEKLIRSYSVSCRNQCSSGGLVNGLGVPETK GNVLNGRQELMLPKNRSVRHSSNNVDAGLLRFYLTPLKSYRRSRSGMSSLKDSFSTARSSCDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 537 | 535 | 7.3E-173 | – | |
| PANTHER | 3 | 537 | 535 | 7.3E-173 | ||
| Pfam | 5 | 41 | 37 | 2.6E-10 | ||
| MobiDBLite | 37 | 71 | 35 | - | – | |
| MobiDBLite | 37 | 67 | 31 | - | – | |
| Pfam | 38 | 92 | 55 | 6.7E-9 | ||
| Pfam | 120 | 522 | 403 | 3.3E-101 | ||
| Coils | 267 | 287 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0131600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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