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LotjaGi6g1v0134100.1

Overview

Field Value
Gene ID LotjaGi6g1v0134100
Transcript ID LotjaGi6g1v0134100.1
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description RNA-binding family protein; TAIR: AT1G07350.4 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q84TH4|SR45A_ARATH Serine/arginine-rich splicing factor SR45a; TrEMBL-Plants: tr|I3SKU2|I3SKU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0134100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:38692823..38697947) extracted from Lotus japonicus Gifu genome v1.2.

TTAATTCTGGTTTGGCGTCCGATTCTCCAGAAACTTCTCCCCAGACGAAAAATTACAGCCTCACACACTTCCTCCCTCTA CATATATTTCATCTCCACTTTCCTCTCCATTCCAAAACGCAACCCTCCCCGTATCGTTCACCTGAGCCGCTGCTACCACT GCATCATTATCACAGCGTTCATCTGCTTTTATGGTGAGTTTCAATCTCATTCGTATCTTATATCTGTAGGGCCTTAGCTC GCTGATTTCGTTTTTTTCTATTTTTTTTATAATCTGGTTTGTGAAATTTACGTGTGAAATTGAATTGATCATGTTGTTTG CACTGCTTTGAATTTCCTTTTTGTATTGGGGATTTTAGCTTTTCTATGTTGAAGTTCATTATCGAAGATGATGTATTGAA TTTAATTGTTTTGTGGGTTGATTTTGAGTTTTGAAGGGATTTAATATTTGTTTGTATGCGATGCTTGATTGATAGAATCT TAGATAACTATGTAATTAGAGCCGTCAAGTTAACGAACCCAATAAGCAAGGATATGTTGGTTGCAATTTTTGAAGTAGCT ATCACTACCATACTGTTTGGTTCAAAGGAGGGGAGGGGAGGGGAGGGATTTTAATGGAGGGGAGGGGAAGGGAGGGGAGG GATTTTAATACTTATTACGTTTGGTTCATAGGAGGGGAGGGGAGGGAAAATAACTTATTTTTATTTGGTTCACTAGGGGA GTGGAGTGATTTTATAATTAAAATTACTTTTATACCCTTTTATATATTTACTTTAATTAAACAACACAATATAACATCCT TCTTCATCAGCAATTATTCTGCATAATTTTAAACCTTCACCACAACAAAATATTCTGCATAATTTTTCAGGATCTGCACT TCCAACAAAATATTCAAGTCGGAGCAAAAGCAAAATACAAATAAGAAAGAAAACTGGAAAAATCCCTGAAACAGTGCCTC AAAAATTAATACACAAGTTATAAAGACTAGAGAACACTTCCAGGGAAAGAGCAAAATAGTCAAGACCACTAGTAACATTC AAGACCCTTCTCCAGTAGCACTATAAACAAAATCCTTCATGCCACCCACCCACAACAGAAGCCTCGAAACAAGCAAGGAT TGAATTAGCTGGCAAAAGCAAACCAATCCTGTACTGCAATATATATGCACAACATATAGTAGCACTAATGGCAGCTTTTC TGGAAGTGGCTGAATAAATTTGGTTTAGACCAGCTTTGTTGCAGTTAGTGAGAAAATGGAGTATGAGTTCATGAGAAAGA TTAGTCAAGTACAAGTTCATTCAGTTTTTGTTTTGTCTTATTAAATTAAGTATAGAGATTTGGCACTGATTGATCTAAGC TGCTTCATTTTCCAAAGTCAATTACTGTGTTAGCTGCATAACATTTTGATGCATTCTGCAATTCCACTAAGACACGGTTT CTTTCTTTCTACTTCCCAAATCTTATGGTGCCTAATTAGTATGTATTATTTGGGGCAAGAACATTTGGGGCAATTGGAAA TGGAATTGCAGATGATACAGTGTCGTACAAACAATGACAGCATGAATAAACATCACCATGATGAACCAAACAATATATAC ATGTTGAACCAAACAATATAACATTGATAGCATGAATAAACATAACAGAAAGAGGGCTACTAACACATACCTGATTGATT CAATTGGTGACAAAGAAAGGGCTGCAGTTGGGGTGCGAATGCAGGGGCCGGCGCAGCCGAGAAGAGGCGGCGGCGGAGTG GGGGGCACCGGCGGAGAGAGACCAGAGAAGGGGCCAGAGGTGGTTGGTATGAAGAAGCTGACCTATACGTGAAATGAAGA AGGGGATATACACATGAAACCCTATAGGATAAATTGGAATTTTTTAATTTGTGCAGGGTTATTTTTGTCTGAAATTTATT TCCCCTCCAAATTCCCCCACTTTTGGGGGGAACAAAAAGTTGAGGTTGGAGGGAATTTGCTCCCCCCCCCATTTCCCTCC CCTCCCCTCCTAAAATTTGAACCAAACAAAATCAGATTTTTAAAATCCCTCCCCTCCCCTCCATTATCCTCCAACCAAAC ATTTACATGTTATATATGATAGTGGTTAGTTTTCTGGATTACAAACTATGTTGTATGTCAAGATATTATTTGTGTTTAAT TTTTTTTAAGTTAAAAAAATTGAATACTAATATCACATAATATCTTGACATGTAAACGAGTTTGTTAACATGATACTAAC CTCTCATACATTAGATATGTGGATATGTGGATAAGTCTTCAAATCCACGAATATGAATACCTTGATCTATGGTACATGGA GAAATTATCCGGTTTGCAATTTTTGTTTGGCTTATTCAGGACTTGGTTATATAAGTTTATCATTAATTATTAGAAGTGCT GATGTTTCTTTTCTTTTTCTTTTTGGTTGCTTGCTGAATTTTGGCAGATGTCATACTCAAGAAGATCAAGGTAAGATGCC CTTTCAATGTTGAATTTTTCTAGTCTATTACAAGTGACATATGTTTTTGCTTATAGGTGTTCCCTTTTCATTTTACAGGT ATTCTCTTTCTCCTTCTCCAGACAGGAGATACAGGTCTGTGTCCAGGTCTCTTTCAAGGTCCCAATCCCGAAGCCGTTCA AGGTAGGTCTCTTAATTGGGTTAATTCTTTGTTGCTATATCTGATTTTTTGATCACACATTCATTTTCAAATTGTTCTAT TTTTTTCTTTGGTGATGTAGGAGTTTTTCTCCCGACGTGGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCC TAGGATCACCAAGAGAGAATTGGAGAAGCATTTTGCTACTGAAGGAAAAGTGTGTCCTCAATCCATTTTTACTTGTGGTA GTTCTAACATAATAGTTGTAGTAGCTTATGATTCCTTAGGGATTTTGTATGCTGTCTGTCTACTGTTTCTTACTTTTGAG TTGGCCTTTTCTAGGTGATAGATGTTCATCTGGTAGTCGATCCATGGACAAGGGAATCCCGTGGGTTTGGATTCGTGACA ATGGATACTCTTGAAGATGCTAATCGGTGTGTTAAGTACCTGAATCGCTCTGTACTTGAAGGGCGTGTTATCACGGTTGA GAAGGTATACCTTTCGAGTAAAGTCCTATTTTTGGGCTTGATCTTTAATTTCTAGATGTTTTGGTTTTTTATTTTTGGTT CAAATCCAATTCATGGAAGATATATGGATGATGTGCCCTTTAAGTTCTATTGAGTTTTGAATGTTTTGTGCTTCTTTCCA TTTGAAGTTTCTGTGGCAGCAGGTCAGCTGTGTGAAGCAGCTCAACATCAAACTCTCAAATCACAACTAATCAAACAAAT CAAATACAACAAGTCTCAGACCATTGGGGTTGTATGCCCTGCATTTCCCTCTTTCTCCTTGCATTTATATCTTATTATAT TTCATGTTCCCTGAATATGAATAGTTTTTAAGAAAAATATGTCATATTTGACAATCATATTGTTATGATCTAAATTTTTG GTGAACATGTATTATTTTGATTTTCATATCAGTAGTATTAGTGCTTACAATATTGTGCATTGCAATGCTCTGTCCTCATG CTGTTGTATGTGTTTATTGCCAGGCTAGAAGACGACGTGGTCGAACCCCCACTCCTGGGAGGTACCTAGGGTTGAGGACT GTTCGAGGTGTGTTTCATTGTTCTTTCTTGTGATTTCATCTTTTACTGTATATAATTATTCTCAGAACGTGTAATTGGGC TAACACTGTTATCCCATTTGATTTATCAGCACGCCGGCGCTCTCCAAGTTACTCTCCTCGCCGCCGCTCTCCAACCTATT CTCCTTACAGAAGAAGCTATAGTCGTTCTCCCTATTCTTCAGACCGCAGCAGGAGTCGATCTCGATCTTACTCCCCTGAC TATCGGAGAAGGAGGTCCTACTCTCCATACTACAGCCGGCGAAGGAGGTCTTACTCTCCACACTACAGCAGGCGCCGCCG GTCATATTCCCGGTCTCGCTCTCCTTACGACGGCTCACCTGTCAGCATCCGTGACAGATCATACTCTCCTTATGACTCCA GATATGATTCCCCGGACGATCGCTCCTACAGAAGGCCCCGTCACAGGTCACTCTCTCGAAGTGTGTCGCCCCCGCCAAGG AGAAGGTCAAGGAGGAGCTACTCACGAAGTGTCTCTCCTGTTCGGAGGAGGAGGTACTCACCAAGTGTGTCTCCCAGTCC AAGGAGGAGATCGGGGAGGAGTTATTCAAGAAGCTCTAGAAAGAGTGGTGGTTATTATTCCAAACGCAAGTATTCGCGAT CAAGGAGCCCAAGTGTGAGTGCAAGTTCAAGATCAATATCGAGGTCTGATACTCCCGGATCCACTCCTTGAACTTGATAT TTGTAGCTCGTTGATTGCCTTATGCATCTTAGGTTTATTGGTGTATTGGTGCGGAGAACTATGTAGAGTTATAGAATGGA GGTTATCATGGTTAGTTTCGTAGAATGGAGGTTATCATGGTTAGTTTCGTTCAGGGCTTGACTCGAGACACATAATGCTT TTATTATATGATGGGTACTGAAATTGCGTTAGCGATCATAGTTTCAAGTTTCTTATGGTTTTTGTTTGTTTTCTAGAACT TTACATTCGTAAGTAAGTACTCTGGTCATTCTCATCTCTACTCGTAGTAAGCAGAAGTATTTTGAAAAAGATCATACGAG CTTTAGTAAAAATGTTTTGTATAGATGCTTGGAATATATATTTTGAAACTAATAACAAGTTTGTATTGAAAAATATAGTT TGGTGGTATAGGCATCCACTTAAGAGGAGATCTTTTGGTCGGATTAGAATAATCATTCCCTAACTAATATTAACAGCTAT GAGCCTACAAGGTAAAATGCAGTAAATTTCATTCACATTGGATTTGTTCTGTAGTATGTAAGTTACGAAAATATCAGGTA CCAAACTACCGTGGTAACCATCCTTTCTCAACTGCCTCTCCTAGCCCAAAGCCGCTGCATCTGAGACTGTCCCCCACAAA GTAGTGGCCTCAAGCTCACCCGGAGCCTAAGCTTCGCGGATTACTCTTCTAGATACAATAAATCTCATTCCTGTTGTGAA CTAAC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0134100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGTCATACTCAAGAAGATCAAGGTATTCTCTTTCTCCTTCTCCAGACAGGAGATACAGGTCTGTGTCCAGGTCTCT TTCAAGGTCCCAATCCCGAAGCCGTTCAAGGAGTTTTTCTCCCGACGTGGAAAATCCAGGAAACAATTTGTATGTGACAG GATTGTCTCCTAGGATCACCAAGAGAGAATTGGAGAAGCATTTTGCTACTGAAGGAAAAGTGATAGATGTTCATCTGGTA GTCGATCCATGGACAAGGGAATCCCGTGGGTTTGGATTCGTGACAATGGATACTCTTGAAGATGCTAATCGGTGTGTTAA GTACCTGAATCGCTCTGTACTTGAAGGGCGTGTTATCACGGTTGAGAAGGTATACCTTTCGAGTAAAGTCCTATTTTTGG GCTTGATCTTTAATTTCTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0134100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMSYSRRSRYSLSPSPDRRYRSVSRSLSRSQSRSRSRSFSPDVENPGNNLYVTGLSPRITKRELEKHFATEGKVIDVHLV VDPWTRESRGFGFVTMDTLEDANRCVKYLNRSVLEGRVITVEKVYLSSKVLFLGLIFNF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 48 48 - –
Gene3D
G3DSA:3.30.70.330
3 128 126 2.3E-26
IPR012677
PANTHER
PTHR15241
8 123 116 2.2E-50 –
PANTHER
PTHR15241:SF212
8 123 116 2.2E-50 –
SUPERFAMILY
SSF54928
11 123 113 6.25E-26
IPR035979
ProSiteProfiles
PS50102
48 126 79 16.108
IPR000504
SMART
SM00360
49 122 74 7.5E-22
IPR000504
Pfam
PF00076
50 119 70 2.6E-17
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0134100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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