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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0134100 |
| Transcript ID | LotjaGi6g1v0134100.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT1G07350.4 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q84TH4|SR45A_ARATH Serine/arginine-rich splicing factor SR45a; TrEMBL-Plants: tr|I3SKU2|I3SKU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0134100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38692936..38697987) extracted from Lotus japonicus Gifu genome v1.2.
GAACATTGCAGCCCACGGCCCACGAAGAATTGAAGCGTGTTTAATTCTGGTTTGGCGTCCGATTCTCCAGAAACTTCTCC CCAGACGAAAAATTACAGCCTCACACACTTCCTCCCTCTACATATATTTCATCTCCACTTTCCTCTCCATTCCAAAACGC AACCCTCCCCGTATCGTTCACCTGAGCCGCTGCTACCACTGCATCATTATCACAGCGTTCATCTGCTTTTATGGTGAGTT TCAATCTCATTCGTATCTTATATCTGTAGGGCCTTAGCTCGCTGATTTCGTTTTTTTCTATTTTTTTTATAATCTGGTTT GTGAAATTTACGTGTGAAATTGAATTGATCATGTTGTTTGCACTGCTTTGAATTTCCTTTTTGTATTGGGGATTTTAGCT TTTCTATGTTGAAGTTCATTATCGAAGATGATGTATTGAATTTAATTGTTTTGTGGGTTGATTTTGAGTTTTGAAGGGAT TTAATATTTGTTTGTATGCGATGCTTGATTGATAGAATCTTAGATAACTATGTAATTAGAGCCGTCAAGTTAACGAACCC AATAAGCAAGGATATGTTGGTTGCAATTTTTGAAGTAGCTATCACTACCATACTGTTTGGTTCAAAGGAGGGGAGGGGAG GGGAGGGATTTTAATGGAGGGGAGGGGAAGGGAGGGGAGGGATTTTAATACTTATTACGTTTGGTTCATAGGAGGGGAGG GGAGGGAAAATAACTTATTTTTATTTGGTTCACTAGGGGAGTGGAGTGATTTTATAATTAAAATTACTTTTATACCCTTT TATATATTTACTTTAATTAAACAACACAATATAACATCCTTCTTCATCAGCAATTATTCTGCATAATTTTAAACCTTCAC CACAACAAAATATTCTGCATAATTTTTCAGGATCTGCACTTCCAACAAAATATTCAAGTCGGAGCAAAAGCAAAATACAA ATAAGAAAGAAAACTGGAAAAATCCCTGAAACAGTGCCTCAAAAATTAATACACAAGTTATAAAGACTAGAGAACACTTC CAGGGAAAGAGCAAAATAGTCAAGACCACTAGTAACATTCAAGACCCTTCTCCAGTAGCACTATAAACAAAATCCTTCAT GCCACCCACCCACAACAGAAGCCTCGAAACAAGCAAGGATTGAATTAGCTGGCAAAAGCAAACCAATCCTGTACTGCAAT ATATATGCACAACATATAGTAGCACTAATGGCAGCTTTTCTGGAAGTGGCTGAATAAATTTGGTTTAGACCAGCTTTGTT GCAGTTAGTGAGAAAATGGAGTATGAGTTCATGAGAAAGATTAGTCAAGTACAAGTTCATTCAGTTTTTGTTTTGTCTTA TTAAATTAAGTATAGAGATTTGGCACTGATTGATCTAAGCTGCTTCATTTTCCAAAGTCAATTACTGTGTTAGCTGCATA ACATTTTGATGCATTCTGCAATTCCACTAAGACACGGTTTCTTTCTTTCTACTTCCCAAATCTTATGGTGCCTAATTAGT ATGTATTATTTGGGGCAAGAACATTTGGGGCAATTGGAAATGGAATTGCAGATGATACAGTGTCGTACAAACAATGACAG CATGAATAAACATCACCATGATGAACCAAACAATATATACATGTTGAACCAAACAATATAACATTGATAGCATGAATAAA CATAACAGAAAGAGGGCTACTAACACATACCTGATTGATTCAATTGGTGACAAAGAAAGGGCTGCAGTTGGGGTGCGAAT GCAGGGGCCGGCGCAGCCGAGAAGAGGCGGCGGCGGAGTGGGGGGCACCGGCGGAGAGAGACCAGAGAAGGGGCCAGAGG TGGTTGGTATGAAGAAGCTGACCTATACGTGAAATGAAGAAGGGGATATACACATGAAACCCTATAGGATAAATTGGAAT TTTTTAATTTGTGCAGGGTTATTTTTGTCTGAAATTTATTTCCCCTCCAAATTCCCCCACTTTTGGGGGGAACAAAAAGT TGAGGTTGGAGGGAATTTGCTCCCCCCCCCATTTCCCTCCCCTCCCCTCCTAAAATTTGAACCAAACAAAATCAGATTTT TAAAATCCCTCCCCTCCCCTCCATTATCCTCCAACCAAACATTTACATGTTATATATGATAGTGGTTAGTTTTCTGGATT ACAAACTATGTTGTATGTCAAGATATTATTTGTGTTTAATTTTTTTTAAGTTAAAAAAATTGAATACTAATATCACATAA TATCTTGACATGTAAACGAGTTTGTTAACATGATACTAACCTCTCATACATTAGATATGTGGATATGTGGATAAGTCTTC AAATCCACGAATATGAATACCTTGATCTATGGTACATGGAGAAATTATCCGGTTTGCAATTTTTGTTTGGCTTATTCAGG ACTTGGTTATATAAGTTTATCATTAATTATTAGAAGTGCTGATGTTTCTTTTCTTTTTCTTTTTGGTTGCTTGCTGAATT TTGGCAGATGTCATACTCAAGAAGATCAAGGTAAGATGCCCTTTCAATGTTGAATTTTTCTAGTCTATTACAAGTGACAT ATGTTTTTGCTTATAGGTGTTCCCTTTTCATTTTACAGGTATTCTCTTTCTCCTTCTCCAGACAGGAGATACAGGTCTGT GTCCAGGTCTCTTTCAAGGTCCCAATCCCGAAGCCGTTCAAGGTAGGTCTCTTAATTGGGTTAATTCTTTGTTGCTATAT CTGATTTTTTGATCACACATTCATTTTCAAATTGTTCTATTTTTTTCTTTGGTGATGTAGGAGTTTTTCTCCCGACGTGG AAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGAGAATTGGAGAAGCATTTTGCTACT GAAGGAAAAGTGTGTCCTCAATCCATTTTTACTTGTGGTAGTTCTAACATAATAGTTGTAGTAGCTTATGATTCCTTAGG GATTTTGTATGCTGTCTGTCTACTGTTTCTTACTTTTGAGTTGGCCTTTTCTAGGTGATAGATGTTCATCTGGTAGTCGA TCCATGGACAAGGGAATCCCGTGGGTTTGGATTCGTGACAATGGATACTCTTGAAGATGCTAATCGGTGTGTTAAGTACC TGAATCGCTCTGTACTTGAAGGGCGTGTTATCACGGTTGAGAAGGTATACCTTTCGAGTAAAGTCCTATTTTTGGGCTTG ATCTTTAATTTCTAGATGTTTTGGTTTTTTATTTTTGGTTCAAATCCAATTCATGGAAGATATATGGATGATGTGCCCTT TAAGTTCTATTGAGTTTTGAATGTTTTGTGCTTCTTTCCATTTGAAGTTTCTGTGGCAGCAGGTCAGCTGTGTGAAGCAG CTCAACATCAAACTCTCAAATCACAACTAATCAAACAAATCAAATACAACAAGTCTCAGACCATTGGGGTTGTATGCCCT GCATTTCCCTCTTTCTCCTTGCATTTATATCTTATTATATTTCATGTTCCCTGAATATGAATAGTTTTTAAGAAAAATAT GTCATATTTGACAATCATATTGTTATGATCTAAATTTTTGGTGAACATGTATTATTTTGATTTTCATATCAGTAGTATTA GTGCTTACAATATTGTGCATTGCAATGCTCTGTCCTCATGCTGTTGTATGTGTTTATTGCCAGGCTAGAAGACGACGTGG TCGAACCCCCACTCCTGGGAGGTACCTAGGGTTGAGGACTGTTCGAGGTGTGTTTCATTGTTCTTTCTTGTGATTTCATC TTTTACTGTATATAATTATTCTCAGAACGTGTAATTGGGCTAACACTGTTATCCCATTTGATTTATCAGCACGCCGGCGC TCTCCAAGTTACTCTCCTCGCCGCCGCTCTCCAACCTATTCTCCTTACAGAAGAAGCTATAGTCGTTCTCCCTATTCTTC AGACCGCAGCAGGAGTCGATCTCGATCTTACTCCCCTGACTATCGGAGAAGGAGGTCCTACTCTCCATACTACAGCCGGC GAAGGAGGTCTTACTCTCCACACTACAGCAGGCGCCGCCGGTCATATTCCCGGTCTCGCTCTCCTTACGACGGCTCACCT GTCAGCATCCGTGACAGATCATACTCTCCTTATGACTCCAGATATGATTCCCCGGACGATCGCTCCTACAGAAGGCCCCG TCACAGGTCACTCTCTCGAAGTGTGTCGCCCCCGCCAAGGAGAAGGTCAAGGAGGAGCTACTCACGAAGTGTCTCTCCTG TTCGGAGGAGGAGGTACTCACCAAGTGTGTCTCCCAGTCCAAGGAGGAGATCGGGGAGGAGTTATTCAAGAAGCTCTAGA AAGAGTGGTGGTTATTATTCCAAACGCAAGTATTCGCGATCAAGGAGCCCAAGTGTGAGTGCAAGTTCAAGATCAATATC GAGGTCTGATACTCCCGGATCCACTCCTTGAACTTGATATTTGTAGCTCGTTGATTGCCTTATGCATCTTAGGTTTATTG GTGTATTGGTGCGGAGAACTATGTAGAGTTATAGAATGGAGGTTATCATGGTTAGTTTCGTAGAATGGAGGTTATCATGG TTAGTTTCGTTCAGGGCTTGACTCGAGACACATAATGCTTTTATTATATGATGGGTACTGAAATTGCGTTAGCGATCATA GTTTCAAGTTTCTTATGGTTTTTGTTTGTTTTCTAGAACTTTACATTCGTAAGTAAGTACTCTGGTCATTCTCATCTCTA CTCGTAGTAAGCAGAAGTATTTTGAAAAAGATCATACGAGCTTTAGTAAAAATGTTTTGTATAGATGCTTGGAATATATA TTTTGAAACTAATAACAAGTTTGTATTGAAAAATATAGTTTGGTGGTATAGGCATCCACTTAAGAGGAGATCTTTTGGTC GGATTAGAATAATCATTCCCTAACTAATATTAACAGCTATGAGCCTACAAGGTAAAATGCAGTAAATTTCATTCACATTG GATTTGTTCTGTAGTATGTAAGTTACGAAAATATCAGGTACCAAACTACCGTGGTAACCATCCTTTCTCAACTGCCTCTC CTAGCCCAAAGC
CDS sequence (LotjaGi6g1v0134100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTCATACTCAAGAAGATCAAGGTATTCTCTTTCTCCTTCTCCAGACAGGAGATACAGGTCTGTGTCCAGGTCTCT TTCAAGGTCCCAATCCCGAAGCCGTTCAAGGAGTTTTTCTCCCGACGTGGAAAATCCAGGAAACAATTTGTATGTGACAG GATTGTCTCCTAGGATCACCAAGAGAGAATTGGAGAAGCATTTTGCTACTGAAGGAAAAGTGATAGATGTTCATCTGGTA GTCGATCCATGGACAAGGGAATCCCGTGGGTTTGGATTCGTGACAATGGATACTCTTGAAGATGCTAATCGGTGTGTTAA GTACCTGAATCGCTCTGTACTTGAAGGGCGTGTTATCACGGTTGAGAAGGTATACCTTTCGAGTAAAGTCCTATTTTTGG GCTTGATCTTTAATTTCTAG
Protein sequence (LotjaGi6g1v0134100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSYSRRSRYSLSPSPDRRYRSVSRSLSRSQSRSRSRSFSPDVENPGNNLYVTGLSPRITKRELEKHFATEGKVIDVHLV VDPWTRESRGFGFVTMDTLEDANRCVKYLNRSVLEGRVITVEKVYLSSKVLFLGLIFNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 48 | 48 | - | – | |
| Gene3D | 3 | 128 | 126 | 2.3E-26 | ||
| PANTHER | 8 | 123 | 116 | 2.2E-50 | – | |
| PANTHER | 8 | 123 | 116 | 2.2E-50 | – | |
| SUPERFAMILY | 11 | 123 | 113 | 6.25E-26 | ||
| ProSiteProfiles | 48 | 126 | 79 | 16.108 | ||
| SMART | 49 | 122 | 74 | 7.5E-22 | ||
| Pfam | 50 | 119 | 70 | 2.6E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0134100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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