Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0134100 |
| Transcript ID | LotjaGi6g1v0134100.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT1G07350.4 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q84TH4|SR45A_ARATH Serine/arginine-rich splicing factor SR45a; TrEMBL-Plants: tr|I3SKU2|I3SKU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0134100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38693265..38697063) extracted from Lotus japonicus Gifu genome v1.2.
ACAAAATATTCAAGTCGGAGCAAAAGCAAAATACAAATAAGAAAGAAAACTGGAAAAATCCCTGAAACAGTGCCTCAAAA ATTAATACACAAGTTATAAAGACTAGAGAACACTTCCAGGGAAAGAGCAAAATAGTCAAGACCACTAGTAACATTCAAGA CCCTTCTCCAGTAGCACTATAAACAAAATCCTTCATGCCACCCACCCACAACAGAAGCCTCGAAACAAGCAAGGATTGAA TTAGCTGGCAAAAGCAAACCAATCCTGTACTGCAATATATATGCACAACATATAGTAGCACTAATGGCAGCTTTTCTGGA AGTGGCTGAATAAATTTGGTTTAGACCAGCTTTGTTGCAGTTAGTGAGAAAATGGAGTATGAGTTCATGAGAAAGATTAG TCAAGTACAAGTTCATTCAGTTTTTGTTTTGTCTTATTAAATTAAGTATAGAGATTTGGCACTGATTGATCTAAGCTGCT TCATTTTCCAAAGTCAATTACTGTGTTAGCTGCATAACATTTTGATGCATTCTGCAATTCCACTAAGACACGGTTTCTTT CTTTCTACTTCCCAAATCTTATGGTGCCTAATTAGTATGTATTATTTGGGGCAAGAACATTTGGGGCAATTGGAAATGGA ATTGCAGATGATACAGTGTCGTACAAACAATGACAGCATGAATAAACATCACCATGATGAACCAAACAATATATACATGT TGAACCAAACAATATAACATTGATAGCATGAATAAACATAACAGAAAGAGGGCTACTAACACATACCTGATTGATTCAAT TGGTGACAAAGAAAGGGCTGCAGTTGGGGTGCGAATGCAGGGGCCGGCGCAGCCGAGAAGAGGCGGCGGCGGAGTGGGGG GCACCGGCGGAGAGAGACCAGAGAAGGGGCCAGAGGTGGTTGGTATGAAGAAGCTGACCTATACGTGAAATGAAGAAGGG GATATACACATGAAACCCTATAGGATAAATTGGAATTTTTTAATTTGTGCAGGGTTATTTTTGTCTGAAATTTATTTCCC CTCCAAATTCCCCCACTTTTGGGGGGAACAAAAAGTTGAGGTTGGAGGGAATTTGCTCCCCCCCCCATTTCCCTCCCCTC CCCTCCTAAAATTTGAACCAAACAAAATCAGATTTTTAAAATCCCTCCCCTCCCCTCCATTATCCTCCAACCAAACATTT ACATGTTATATATGATAGTGGTTAGTTTTCTGGATTACAAACTATGTTGTATGTCAAGATATTATTTGTGTTTAATTTTT TTTAAGTTAAAAAAATTGAATACTAATATCACATAATATCTTGACATGTAAACGAGTTTGTTAACATGATACTAACCTCT CATACATTAGATATGTGGATATGTGGATAAGTCTTCAAATCCACGAATATGAATACCTTGATCTATGGTACATGGAGAAA TTATCCGGTTTGCAATTTTTGTTTGGCTTATTCAGGACTTGGTTATATAAGTTTATCATTAATTATTAGAAGTGCTGATG TTTCTTTTCTTTTTCTTTTTGGTTGCTTGCTGAATTTTGGCAGATGTCATACTCAAGAAGATCAAGGTAAGATGCCCTTT CAATGTTGAATTTTTCTAGTCTATTACAAGTGACATATGTTTTTGCTTATAGGTGTTCCCTTTTCATTTTACAGGTATTC TCTTTCTCCTTCTCCAGACAGGAGATACAGGTCTGTGTCCAGGTCTCTTTCAAGGTCCCAATCCCGAAGCCGTTCAAGGT AGGTCTCTTAATTGGGTTAATTCTTTGTTGCTATATCTGATTTTTTGATCACACATTCATTTTCAAATTGTTCTATTTTT TTCTTTGGTGATGTAGGAGTTTTTCTCCCGACGTGGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGG ATCACCAAGAGAGAATTGGAGAAGCATTTTGCTACTGAAGGAAAAGTGTGTCCTCAATCCATTTTTACTTGTGGTAGTTC TAACATAATAGTTGTAGTAGCTTATGATTCCTTAGGGATTTTGTATGCTGTCTGTCTACTGTTTCTTACTTTTGAGTTGG CCTTTTCTAGGTGATAGATGTTCATCTGGTAGTCGATCCATGGACAAGGGAATCCCGTGGGTTTGGATTCGTGACAATGG ATACTCTTGAAGATGCTAATCGGTGTGTTAAGTACCTGAATCGCTCTGTACTTGAAGGGCGTGTTATCACGGTTGAGAAG GTATACCTTTCGAGTAAAGTCCTATTTTTGGGCTTGATCTTTAATTTCTAGATGTTTTGGTTTTTTATTTTTGGTTCAAA TCCAATTCATGGAAGATATATGGATGATGTGCCCTTTAAGTTCTATTGAGTTTTGAATGTTTTGTGCTTCTTTCCATTTG AAGTTTCTGTGGCAGCAGGTCAGCTGTGTGAAGCAGCTCAACATCAAACTCTCAAATCACAACTAATCAAACAAATCAAA TACAACAAGTCTCAGACCATTGGGGTTGTATGCCCTGCATTTCCCTCTTTCTCCTTGCATTTATATCTTATTATATTTCA TGTTCCCTGAATATGAATAGTTTTTAAGAAAAATATGTCATATTTGACAATCATATTGTTATGATCTAAATTTTTGGTGA ACATGTATTATTTTGATTTTCATATCAGTAGTATTAGTGCTTACAATATTGTGCATTGCAATGCTCTGTCCTCATGCTGT TGTATGTGTTTATTGCCAGGCTAGAAGACGACGTGGTCGAACCCCCACTCCTGGGAGGTACCTAGGGTTGAGGACTGTTC GAGGTGTGTTTCATTGTTCTTTCTTGTGATTTCATCTTTTACTGTATATAATTATTCTCAGAACGTGTAATTGGGCTAAC ACTGTTATCCCATTTGATTTATCAGCACGCCGGCGCTCTCCAAGTTACTCTCCTCGCCGCCGCTCTCCAACCTATTCTCC TTACAGAAGAAGCTATAGTCGTTCTCCCTATTCTTCAGACCGCAGCAGGAGTCGATCTCGATCTTACTCCCCTGACTATC GGAGAAGGAGGTCCTACTCTCCATACTACAGCCGGCGAAGGAGGTCTTACTCTCCACACTACAGCAGGCGCCGCCGGTCA TATTCCCGGTCTCGCTCTCCTTACGACGGCTCACCTGTCAGCATCCGTGACAGATCATACTCTCCTTATGACTCCAGATA TGATTCCCCGGACGATCGCTCCTACAGAAGGCCCCGTCACAGGTCACTCTCTCGAAGTGTGTCGCCCCCGCCAAGGAGAA GGTCAAGGAGGAGCTACTCACGAAGTGTCTCTCCTGTTCGGAGGAGGAGGTACTCACCAAGTGTGTCTCCCAGTCCAAGG AGGAGATCGGGGAGGAGTTATTCAAGAAGCTCTAGAAAGAGTGGTGGTTATTATTCCAAACGCAAGTATTCGCGATCAAG GAGCCCAAGTGTGAGTGCAAGTTCAAGATCAATATCGAGGTCTGATACTCCCGGATCCACTCCTTGAACTTGATATTTGT AGCTCGTTGATTGCCTTATGCATCTTAGGTTTATTGGTGTATTGGTGCGGAGAACTATGTAGAGTTATAGAATGGAGGTT ATCATGGTTAGTTTCGTAGAATGGAGGTTATCATGGTTAGTTTCGTTCAGGGCTTGACTCGAGACACATAATGCTTTTAT TATATGATGGGTACTGAAATTGCGTTAGCGATCATAGTTTCAAGTTTCTTATGGTTTTTGTTTGTTTTCTAGAACTTTAC ATTCGTAAGTAAGTACTCTGGTCATTCTCATCTCTACTC
CDS sequence (LotjaGi6g1v0134100.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTATGAGTTCATGAGAAAGATTAGTCAAATGTCATACTCAAGAAGATCAAGGTATTCTCTTTCTCCTTCTCCAGA CAGGAGATACAGGTCTGTGTCCAGGTCTCTTTCAAGGTCCCAATCCCGAAGCCGTTCAAGGAGTTTTTCTCCCGACGTGG AAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGAGAATTGGAGAAGCATTTTGCTACT GAAGGAAAAGTGATAGATGTTCATCTGGTAGTCGATCCATGGACAAGGGAATCCCGTGGGTTTGGATTCGTGACAATGGA TACTCTTGAAGATGCTAATCGGTGTGTTAAGTACCTGAATCGCTCTGTACTTGAAGGGCGTGTTATCACGGTTGAGAAGG TATACCTTTCGAGTAAAGTCCTATTTTTGGGCTTGATCTTTAATTTCTAG
Protein sequence (LotjaGi6g1v0134100.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEYEFMRKISQMSYSRRSRYSLSPSPDRRYRSVSRSLSRSQSRSRSRSFSPDVENPGNNLYVTGLSPRITKRELEKHFAT EGKVIDVHLVVDPWTRESRGFGFVTMDTLEDANRCVKYLNRSVLEGRVITVEKVYLSSKVLFLGLIFNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 138 | 135 | 1.5E-26 | ||
| MobiDBLite | 16 | 58 | 43 | - | – | |
| PANTHER | 18 | 133 | 116 | 1.7E-50 | – | |
| PANTHER | 18 | 133 | 116 | 1.7E-50 | – | |
| SUPERFAMILY | 18 | 133 | 116 | 5.34E-26 | ||
| ProSiteProfiles | 58 | 136 | 79 | 16.108 | ||
| SMART | 59 | 132 | 74 | 7.5E-22 | ||
| Pfam | 60 | 129 | 70 | 3.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0134100.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…