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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0135400 |
| Transcript ID | LotjaGi6g1v0135400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heterogeneous nuclear ribonucleoprotein; TAIR: AT3G20890.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F; TrEMBL-Plants: tr|V7BNU2|V7BNU2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0135400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:39032005..39037233) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAATCGAGAAACAGAAAAATCAAGCGTGTGTTGTGTTTGTGTACGAGAATACGGAGACGGAACCAGCTTTGGAGCAA ACCACATCGTTGTTGTTGGACTCACCACAAAACCTTGCTCCCTCTCAATCACTCCACCACCATCTATTTCTTCTTCTTCT ACAATGTTCTACAGAGGGTAACACTCTTTCTCTCTTCTCTGTTTTTTAATTTCAATTCCCTCTTTTTCTTTTCCCTAATT GAAATTGGGGCTTTTTCATTTTCTGTTTCCGTTTCATGCAAATCTTGTGTTTTTCTGTTTCCTTTTCTTTTGTTTTCTGT TTTGTTTATGCGTGACCCTATGAAGCCTTTTCTGAATCTGTCAATTTTCTTGAGACCCTAACTATTTCATGGGTTATTTT TGTTTGCAAAAATTGAACTGTCTTCCTTGCGATTATTAATTTTTTTGAATTCGAAGAAATTGGAATAGTTAGGAGTAGAA CCCCAATTAAGAGAAAGTTGAAAAACATATATATTTTTTTGTCTCAATTTGAATGCTTAGTGATGGATGGTGATTTACTG AGAAGTGCTGTCTCTATGTGATTAAGATGTGATGTGAACAAACAAGTATGATTGGGAGCGCTGATGGGGAACAAAACAAA CAATATGCTTAAGTATTTTAGGTCAATCATACAAATTGATGGGGGATAGAGGGAGATGTAAACCATAAAGTTCAAATAGG TGATTATGTGAAATGGAACGATGGTTCTTAGGTAATTTGTGGTAGTAAAGTGCTACTCAAGTTGAAAGGGATGCACAGCT ATAAGACCTATATTGTTGTATGGTATTGAATTCTAGGTGATGAAGAGCTGACAAGAATGTAAATTCAGTGTTGCAAAGTT GAGAATGTTATGGTGGATAAGTGTGGTGGTCTAAGCCAAGATAGGATTAGGAGTGAAAGCATTAGAGACTAGAGAGAATT GTAGCACATATTTTAGAAAAGATGGTAGTATTGGGTATCTGTGGAGAAGACCTATAGAAATACCGGTAAGATGGGTAGGC TAGATTGAGGATAGCCCAGTAGTTAGAGGTAGATGAAGTAGTTAGAGGTAGATGAAGAATAAGGAAAACTGAAGGCGACA CCATTAAAAATGATTTGGAATTAGTCTGTTATCAGTTTTGATTTATGATAGGACATACTGACAATGTTTGATCTATGTAG CTAACTTCATCTTGTGGGAAAAGGCTTTGCTTGCTGTTAGTGTTTACAAATTTAGTATTTCCATGTTTATCTAAAATATG TAATTCTTCACTTTCTATCATGGCGATTGTATACATTCAATCATGCATCATGTTTGTCTGATGGATGGGATCACCGGCAT TATTGTGTTAATCATCATGTTTAATTCTATATTTTCTTTTTGTTCTCTCAACTATTTCAAATGTTCAAGTGGAAATTTTA TTCTGTTTCAAATGAATGTGATCATCATCATGCTCAATGTGTGCACCCCCCCGCACACCAAAATAAATCTTGTTTGCTGT ATATGAACCTCAAGACCCTATGAAAGAGACATTTCCTTGCATGCATCGTCCAAAAACAGGACTTGACTATATAAATGATT CTATTTGCTACATGAAAATAATGGCAAGGCATCATTTTTTAGGGGAAAAAGTGGTCGATATTTAATTTTTTTTTATCTGC ATGCATCTAAATGTAAGTTATCTTATTCTTAAACAGCATGCATAGCATAGTTTGAGATTTGTGTAGACAACATTGTGCTT ATGAAAGTGTTTTCTTAATTTTCACAATGGGTTAGAGATAGGTCAATGAAAGGTAATCTTTATTCTGATTGTTTGTGATG TACTGCTCTAAGGTGAAGTATGAGAACTATTGTGATCTTTTGCCTTTTGATGTTTTATGATATTTTATCTAAATATGTGC AAGTATATGATTTTCTAATTCGCCCAGCCCGTCAGTTTTAGTTGTTGACTGCTGATAAACATTACACGTTGTTCCAGTGT TAGGCTGTCATGTGTTCATATTTAATTTATCTCAATTTGAGAAATTAAATGAAATTGGCTTCTTACTATTGAAAAGAGGC CAGACGAAGTCCTTCACTCCCACTCCTCATCCAGAACTATAGAGAGAAAGTGATTAATAGACAAAAGAGCGATTGATTTG ATTGGACAAATTCACTGTCTGGATTTCGTGTTAATCCTTGTGTTTGTCTATCCTTCATACTCAATGAAAATAAATAGGAT TATAGGCAAAGTCATTGTCTAGCTTTGGTGTCAATCTTTGAGTTCGTTGATGCTTTCAATATTGTTGCGAAAGATGTTTG GTGACTTGATCAAGTTGATCCTTTGATTCCGATAGGTTGATAGTATGCTAATGTAACAAAGTGTTTATTCAAGCTGATTT AGTAAACTTCTTTGAATGCTATTTTTCTAGTAGGTCTGGACTGTCTGGTTACATTTAATAAGCCAAATCCTTCTTGACAT GTCATATTTGCTAGTCCTTTCATAATTGCAACTTTGAGTCGTTGAGCTTCTTGAGTGATTCTATATCTCCATTGAGTTTA ATTGGATGTTGTCTCTGATCTAGGCGTTAGATAAAATTACAGAATGAATTGTCCACATTGTTACTATTTTGAGGGCACCT ACTTATGATTTGTGAGCTTTTTCATATTTCTATTACGTGGATGGTAAAAGAAAAGATTTCTCGATGTGTCTTTATTTTTC TCCTAACACAGTTAATTGTCGTATTTTTTTATGTTGCTGTTGATGCAATGGATGTCTAGCTTTTGTTTTGCTGTTATATT TATCTGTGCACAGATTGCGGAAGGATTCTTTACATCTGATTGTCAGTCATATTTTAAATTTCAATCCTGATTATTTTTGT GATGGGACTCTTTTAAAATTATTTTACCAGACATCTAGACTGTAATGATTTTACTGAAATTTAATGTTGACCTAGAATGT TGAACCATATATGTTGAGTGTTGACTAAAATTGAGCTTCTTTGTTTCTGTTATGGTTATTGGTGAAAACTATAGTAAATT TGCTGATGGTGGAGATGGACGTGAAATGGCTTCTAAACGCCAGCGGACTGTAGATCCAGGATCTTCATTCTATGGAACTT CCCCTGGTTCCAGTTTTCTGTACAATCCATCTCCCTATGGATATGTTAGCCAACCTCCTCCTCCTCCACCTTTCCCTGTT GTTCGTCTGCGCGGCCTTCCCTTTGATTGTACTGAAACTGATGTGGCTGAGTTCTTCCATGGTCTAGACATAGTTGATGT TCTTTTTGTTCACAAAAGCGGCAAGTTCACTGGGGAGGGCTTCTGTGTTCTGGGGTATCCTCTTCAAGTTGACTTTGCTC TTCAAAGAAACAGGCAGAACATGGGTAGAAGATATGTTGAGGTTTTCAGAAGTAAGAGGCAGGAATACTACAAGGCAATT GCAAATGAGGTTTCAGATGCCCGAGGTGGTTCACCACCACCTCGTCGAAGTGCTTCTCGGGCTAAATCGTATGATGAAGG AAAAGAGTCAGCAGAGCACACTGGGGTGTTGCGACTGAGGGGATTGCCATTTTCTGCAAGTAAGGATGACATTCTGGACT TCTTCAAGGATTTTGCGCTATCAGAGGATTCTATTCATATTGTGATGAATTCAGAGGGTAGACCTTCTGGGGAAGCTTAT GTGGAATTCGTAGATGCTGAAGATTCGAAAGCAGCAATGGCGAAAGATAGGATGACACTTGGGAGTCGCTACATAGAGCT ATTTCCTTCATCACACAATGAGATGGAAGATGCAGGTTCAAGAAGACGGTGATTCCTTGGTGGGCTCTTTCATGTACTCT TCTGTAGACATATAATTGTAAGCTTGCTCTCATAGTTAAGATTTTACTCGAGGAGTTATTTTGTGACTTTATTTGTTTTA GAATCAATATATGCTTTTTAATATGCAGATAAGAAATATGACTTTTTTTGGTCATCCGACATCAAAATTTCTTCCAATTA CTTTGTTTAGGATGACAGTAGAACAATATGCAGATAAGAAACATGGTGCATTCTAGAACAATGTTGTGTATTCTAGCTGG ATATGGAATGTGGATAGCTGAAACCAGCCATTCAATCAAGTGCTACTAATATTTCGATGCTCTCCATTGAGTTTGAGGCT TGAGGCTCGAGCCAAGTTCTATTTCTCTATGCATCTGTAGATTTGTTATGCCTTTTGAAACCTTAGAATGTGGTCTAGAA TTACCTTCAGGTCAGAGCTTTATTTGCAGAATGCAGATTCTCAAATCTCATGTTGCTTCTCAGAAAACTGTCAGCAACAT CGTTTTTTGTTCTTGTTCTTGTTCGTCCACAAGATAAGATGATTCAATGGCATCAAAAGATAAGGGTAAATTTTAGATGT CATCTTGGGTATCAATCTATATGCATGACTTTACATTGAATACTTCAGTTAGCCAGCACTGTATTGTATCATATCATAGT GGCTAATCATTTATCACTTCATAACATGACATTCAAATGAATAATTAGTTCTTTTTTTTTTTTTTTTGTAATTTTGATGT TACTGTAGGGCGTAGGCTGGGTTCTAAAGACAAAAATGCTAGATAACATAGTTACGTAAAAATAGGAAAGTAATACATTG AACTGCAATTACGACTTACATTTGAGGAGAGGAGAGATAAGTGATATGATAGATGATGTGATGAGAAGTGAAATGAGATA GGAAGAGAAAGAGTGGAAATGAGAATAAAATGAAGTAAGTGTGAATGTATTAAAATTGTGTTGAACTGGTAATTCCATAT TTGATCTGATCAAAGTTGCCACTCATGGAGAGGCTTATATATTTTTGTCTCATTCCTGTAATCTTGTTTGGCACTCAAGA AAAATCCTGTTTACTCCATTTCTTGGGCAATGTTCAGTGACATTTCTTTTTGGCTCATTTGCAACTTTGATTATGTCAGT TAGAGAGTTATGCAGGATGCCCTGTACTGTAATAATCTCATAGTAAACAGTCCTTTGTCAGTAGCTTTTCTCTGGGATAC GCGATATTGAGCATGATGATAAACACACTCCTGTGTCTCATTTTCATGTTTGCAGGGTGAAAAATGAGATTTTACTGTGG TTTGTGATCTTTGTTCATGATTTTGATTTTCAATATTAATTTTATGATGAGTAGAATTGATTTGTGAAATATATATTTTT AAACAATGAAAGTTGTTTTTCAAATGAGT
CDS sequence (LotjaGi6g1v0135400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTACAGAGGTAAATTTGCTGATGGTGGAGATGGACGTGAAATGGCTTCTAAACGCCAGCGGACTGTAGATCCAGG ATCTTCATTCTATGGAACTTCCCCTGGTTCCAGTTTTCTGTACAATCCATCTCCCTATGGATATGTTAGCCAACCTCCTC CTCCTCCACCTTTCCCTGTTGTTCGTCTGCGCGGCCTTCCCTTTGATTGTACTGAAACTGATGTGGCTGAGTTCTTCCAT GGTCTAGACATAGTTGATGTTCTTTTTGTTCACAAAAGCGGCAAGTTCACTGGGGAGGGCTTCTGTGTTCTGGGGTATCC TCTTCAAGTTGACTTTGCTCTTCAAAGAAACAGGCAGAACATGGGTAGAAGATATGTTGAGGTTTTCAGAAGTAAGAGGC AGGAATACTACAAGGCAATTGCAAATGAGGTTTCAGATGCCCGAGGTGGTTCACCACCACCTCGTCGAAGTGCTTCTCGG GCTAAATCGTATGATGAAGGAAAAGAGTCAGCAGAGCACACTGGGGTGTTGCGACTGAGGGGATTGCCATTTTCTGCAAG TAAGGATGACATTCTGGACTTCTTCAAGGATTTTGCGCTATCAGAGGATTCTATTCATATTGTGATGAATTCAGAGGGTA GACCTTCTGGGGAAGCTTATGTGGAATTCGTAGATGCTGAAGATTCGAAAGCAGCAATGGCGAAAGATAGGATGACACTT GGGAGTCGCTACATAGAGCTATTTCCTTCATCACACAATGAGATGGAAGATGCAGGTTCAAGAAGACGGTGA
Protein sequence (LotjaGi6g1v0135400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFYRGKFADGGDGREMASKRQRTVDPGSSFYGTSPGSSFLYNPSPYGYVSQPPPPPPFPVVRLRGLPFDCTETDVAEFFH GLDIVDVLFVHKSGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDARGGSPPPRRSASR AKSYDEGKESAEHTGVLRLRGLPFSASKDDILDFFKDFALSEDSIHIVMNSEGRPSGEAYVEFVDAEDSKAAMAKDRMTL GSRYIELFPSSHNEMEDAGSRRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 28 | 263 | 236 | 9.7E-93 | – | |
| PANTHER | 28 | 263 | 236 | 9.7E-93 | – | |
| SUPERFAMILY | 47 | 138 | 92 | 3.39E-16 | ||
| Gene3D | 49 | 149 | 101 | 7.9E-21 | ||
| CDD | 60 | 129 | 70 | 1.11377E-21 | – | |
| SMART | 60 | 129 | 70 | 0.0012 | ||
| MobiDBLite | 143 | 169 | 27 | - | – | |
| Gene3D | 156 | 263 | 108 | 2.9E-30 | ||
| SUPERFAMILY | 167 | 260 | 94 | 1.75E-21 | ||
| ProSiteProfiles | 175 | 252 | 78 | 10.019 | ||
| CDD | 176 | 248 | 73 | 1.03153E-31 | – | |
| SMART | 176 | 248 | 73 | 8.9E-10 | ||
| Pfam | 178 | 245 | 68 | 3.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0135400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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