Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0135400.2

Overview

Field Value
Gene ID LotjaGi6g1v0135400
Transcript ID LotjaGi6g1v0135400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Heterogeneous nuclear ribonucleoprotein; TAIR: AT3G20890.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F; TrEMBL-Plants: tr|V7BNU2|V7BNU2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0135400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:39035028..39035816) extracted from Lotus japonicus Gifu genome v1.2.

GAAAACTATAGTAAATTTGCTGATGGTGGAGATGGACGTGAAATGGCTTCTAAACGCCAGCGGACTGTAGATCCAGGATC TTCATTCTATGGAACTTCCCCTGGTTCCAGTTTTCTGTACAATCCATCTCCCTATGGATATGTTAGCCAACCTCCTCCTC CTCCACCTTTCCCTGTTGTTCGTCTGCGCGGCCTTCCCTTTGATTGTACTGAAACTGATGTGGCTGAGTTCTTCCATGGT CTAGACATAGTTGATGTTCTTTTTGTTCACAAAAGCGGCAAGTTCACTGGGGAGGGCTTCTGTGTTCTGGGGTATCCTCT TCAAGTTGACTTTGCTCTTCAAAGAAACAGGCAGAACATGGGTAGAAGATATGTTGAGGTTTTCAGAAGTAAGAGGCAGG AATACTACAAGGCAATTGCAAATGAGGTTTCAGATGCCCGAGGTGGTTCACCACCACCTCGTCGAAGTGCTTCTCGGGCT AAATCGTATGATGAAGGAAAAGAGTCAGCAGAGCACACTGGGGTGTTGCGACTGAGGGGATTGCCATTTTCTGCAAGTAA GGATGACATTCTGGACTTCTTCAAGGATTTTGCGCTATCAGAGGATTCTATTCATATTGTGATGAATTCAGAGGGTAGAC CTTCTGGGGAAGCTTATGTGGAATTCGTAGATGCTGAAGATTCGAAAGCAGCAATGGCGAAAGATAGGATGACACTTGGG AGTCGCTACATAGAGCTATTTCCTTCATCACACAATGAGATGGAAGATGCAGGTTCAAGAAGACGGTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0135400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCTAAACGCCAGCGGACTGTAGATCCAGGATCTTCATTCTATGGAACTTCCCCTGGTTCCAGTTTTCTGTACAA TCCATCTCCCTATGGATATGTTAGCCAACCTCCTCCTCCTCCACCTTTCCCTGTTGTTCGTCTGCGCGGCCTTCCCTTTG ATTGTACTGAAACTGATGTGGCTGAGTTCTTCCATGGTCTAGACATAGTTGATGTTCTTTTTGTTCACAAAAGCGGCAAG TTCACTGGGGAGGGCTTCTGTGTTCTGGGGTATCCTCTTCAAGTTGACTTTGCTCTTCAAAGAAACAGGCAGAACATGGG TAGAAGATATGTTGAGGTTTTCAGAAGTAAGAGGCAGGAATACTACAAGGCAATTGCAAATGAGGTTTCAGATGCCCGAG GTGGTTCACCACCACCTCGTCGAAGTGCTTCTCGGGCTAAATCGTATGATGAAGGAAAAGAGTCAGCAGAGCACACTGGG GTGTTGCGACTGAGGGGATTGCCATTTTCTGCAAGTAAGGATGACATTCTGGACTTCTTCAAGGATTTTGCGCTATCAGA GGATTCTATTCATATTGTGATGAATTCAGAGGGTAGACCTTCTGGGGAAGCTTATGTGGAATTCGTAGATGCTGAAGATT CGAAAGCAGCAATGGCGAAAGATAGGATGACACTTGGGAGTCGCTACATAGAGCTATTTCCTTCATCACACAATGAGATG GAAGATGCAGGTTCAAGAAGACGGTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0135400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASKRQRTVDPGSSFYGTSPGSSFLYNPSPYGYVSQPPPPPPFPVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKSGK FTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDARGGSPPPRRSASRAKSYDEGKESAEHTG VLRLRGLPFSASKDDILDFFKDFALSEDSIHIVMNSEGRPSGEAYVEFVDAEDSKAAMAKDRMTLGSRYIELFPSSHNEM EDAGSRRR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 - –
PANTHER
PTHR13976:SF71
17 248 232 1.8E-92 –
PANTHER
PTHR13976
17 248 232 1.8E-92 –
SUPERFAMILY
SSF54928
32 123 92 2.99E-16
IPR035979
Gene3D
G3DSA:3.30.70.330
34 134 101 7.0E-21
IPR012677
CDD
cd12254
45 114 70 4.36753E-22 –
SMART
SM00360
45 114 70 0.0012
IPR000504
MobiDBLite
mobidb-lite
129 154 26 - –
Gene3D
G3DSA:3.30.70.330
141 248 108 2.5E-30
IPR012677
SUPERFAMILY
SSF54928
152 245 94 1.61E-21
IPR035979
ProSiteProfiles
PS50102
160 237 78 10.019
IPR000504
SMART
SM00360
161 233 73 8.9E-10
IPR000504
CDD
cd12254
161 233 73 3.44445E-32 –
Pfam
PF00076
163 230 68 3.4E-10
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0135400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…