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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0142800 |
Transcript ID | LotjaGi6g1v0142800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P35822|PTPRK_MOUSE Receptor-type tyrosine-protein phosphatase kappa; TrEMBL-Plants: tr|V7BHT0|V7BHT0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0142800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41243785..41245252) extracted from Lotus japonicus Gifu genome v1.2.
TAATAAATCAGTTTAAATCTCTGACTATTAATGTTACTTCCTCAAACATCCACTGGGACCGGTGGAGGGTGGGTGATGGG GAAAATATTGATATATGGCGTCACTCTTGGTTACCAAGTGGTGTGCCGCTTATTTATGGGGAGGATATTGTTCATGAGAC TAATCTTTTGCATGTTTCAGATTTGATATCTCAAGGACCGCAAAGATGGAAGAAGGATCTCATTGAGCTTGTGTTTTGGC CTCCAACAGCAAAGGAGATTTTACAAACTCCTCTTCCTTTGGTGCCTCGACAAGATGTTCTCATGTAGCCAGAAACAATT GATGGAGCTTACACTGCAAAGTCTGGCTACGAGTTTGTTAAACAGCGGAGACTTCAAAGCTCTCCTTCTTCGTCCACAGG CCAGCCTCCCCCCACACACTTTTGGAAAGCTCTTTGGACAGCGGCTGCGTTACCCAGGTGCAAGGAGTTTGCATGGAGGG TGGCGGTGAATATTGTTCCCGTCAATGGTGTCCTTCGGTGGAGGGGAATTAAGGTCGATGATACCTGCGTTTTTTTGCAG GACAGCGGTTGAAACAAGCAGCCATGCTTTGTTCTCTTGTCCTGTCGTATCTCAGTGGTGGCTTGCAAGCCCTTTTGGCC TGCGGTTTCGTGATGATGCTCGTGAACCAGAGGATTTTATGGGGCAGATTTTCAGCTGTGAGGATGCAGATGTTATTTGG GGGGCACTTACGTTTCTGTACGCTGTTTGGGAGTGCAGAAATCGAGCTCTTTTCCAGGGACAGCAACTGAGTATGGAGAA AGTGTTGGCACGTTTAAATGCGCTGGAATCAATTCCAAGCGGTCCAATTGTGAGAAGGACGATGGAGCACAGTACGAGAT GGTATCCTCCTCAAGCAAATGTCCTTAAGTTAAATTTTGATGCCTCTTTTGTGGATAAAGTTGCAGGTTTTGGCTTGATA GCTAGGAATAATGAGGGATTAATTATGACTACTGCTTGTGCCTATCCAGTGGACACTTCAACAACACTCCTAGCAGAAGC ATTGGCCTTTAGATGGGCGATCACGTTGGCTTTGAATCTCCATTTTTTGGAGGTGTGTTTTGAGACCGATTGCTTGCAGT TATATGAAGCTTGGAATAAAGGAAGACAAGGTTCTTCTTATTTGATGTCTATCCTTAGTGATTGTAGGAACTTGATTTCA GGTTTTAATGTTTGTTGTTTTTCGTTTGTTTGTTGTTCCGGGAACTCTGTGGTTGATCGCTTAGCTAATGACTCCTCTAA ATACCCAAACTACGTTTGGATAGAGGAGGTTCCCGCGGAAGTTGAGGTTTTGGGTCAATCTGGTGTAATTGCCAATTTGG CCACTTGATTTTCTTAATAGAATATGTTTCAAAAAAAAATGTTACTAATTGATAACGTTTGGAATTAAGACCGACACTAA TTGCTGTAATTGATTTAATTAAAGATAA
CDS sequence (LotjaGi6g1v0142800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCCTTCGGTGGAGGGGAATTAAGGTCGATGATACCTGCGTTTTTTTGCAGGACAGCGGTTGAAACAAGCAGCCA TGCTTTGTTCTCTTGTCCTGTCGTATCTCAGTGGTGGCTTGCAAGCCCTTTTGGCCTGCGGTTTCGTGATGATGCTCGTG AACCAGAGGATTTTATGGGGCAGATTTTCAGCTGTGAGGATGCAGATGTTATTTGGGGGGCACTTACGTTTCTGTACGCT GTTTGGGAGTGCAGAAATCGAGCTCTTTTCCAGGGACAGCAACTGAGTATGGAGAAAGTGTTGGCACGTTTAAATGCGCT GGAATCAATTCCAAGCGGTCCAATTGTGAGAAGGACGATGGAGCACAGTACGAGATGGTATCCTCCTCAAGCAAATGTCC TTAAGTTAAATTTTGATGCCTCTTTTGTGGATAAAGTTGCAGGTTTTGGCTTGATAGCTAGGAATAATGAGGGATTAATT ATGACTACTGCTTGTGCCTATCCAGTGGACACTTCAACAACACTCCTAGCAGAAGCATTGGCCTTTAGATGGGCGATCAC GTTGGCTTTGAATCTCCATTTTTTGGAGGTGTGTTTTGAGACCGATTGCTTGCAGTTATATGAAGCTTGGAATAAAGGAA GACAAGGTTCTTCTTATTTGATGTCTATCCTTAGTGATTGTAGGAACTTGATTTCAGGTTTTAATGTTTGTTGTTTTTCG TTTGTTTGTTGTTCCGGGAACTCTGTGGTTGATCGCTTAGCTAATGACTCCTCTAAATACCCAAACTACGTTTGGATAGA GGAGGTTCCCGCGGAAGTTGAGGTTTTGGGTCAATCTGGTGTAATTGCCAATTTGGCCACTTGA
Protein sequence (LotjaGi6g1v0142800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSFGGGELRSMIPAFFCRTAVETSSHALFSCPVVSQWWLASPFGLRFRDDAREPEDFMGQIFSCEDADVIWGALTFLYA VWECRNRALFQGQQLSMEKVLARLNALESIPSGPIVRRTMEHSTRWYPPQANVLKLNFDASFVDKVAGFGLIARNNEGLI MTTACAYPVDTSTTLLAEALAFRWAITLALNLHFLEVCFETDCLQLYEAWNKGRQGSSYLMSILSDCRNLISGFNVCCFS FVCCSGNSVVDRLANDSSKYPNYVWIEEVPAEVEVLGQSGVIANLAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 65 | 258 | 194 | 1.6E-39 | – | |
PANTHER | 65 | 258 | 194 | 1.6E-39 | – | |
SUPERFAMILY | 133 | 261 | 129 | 1.52E-10 | ||
Gene3D | 133 | 258 | 126 | 1.4E-10 | ||
CDD | 136 | 255 | 120 | 7.11959E-18 | – | |
Pfam | 137 | 256 | 120 | 3.3E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi6g1v0142800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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