Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0149800 |
| Transcript ID | LotjaGi6g1v0149800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-dependent lipid-binding domain-containing protein; TAIR: AT5G55530.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|O04133|SRC2_SOYBN Protein SRC2; TrEMBL-Plants: tr|A0A0B2SHL7|A0A0B2SHL7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0149800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:42572318..42573577) extracted from Lotus japonicus Gifu genome v1.2.
CATATCATGGATTCCCCCCAATCTGTTGTGTCACCCTTCAGGAGCTTGGTTTTGGGTGAGGGTGAGAAGCACAAGTCTAA GGACATTGAAGTCAATGGGAAGGAAGCAGTCATGTCAAATGTGGAGGAGTTCCTTGGAGTGCTTGACGTTTTCGTGCACC AAGCCAGGGACATTCAGAACATTTGCATATATCACAAGCAAGATGTTTATGCTAAGATTTGCCTGACTAGTAATCCTGAG AATACCGTTTCTACTAAGACTATCAATGGAGGAGGAAGGAACCCTGTCTTCAATGATAATCTTCGTCTCAATGTTCCGAC TATTGAGTGTTCTCTCAAGTGTGAGTTATGGATGCTTAGCAGGGTGAAGAATTATCTTGAAGACCAGTTGCTTGGTTTTG CTTTGGTACCTTTGTCTGAAGTACTAGTCCAGAATGGGAAACTGGAGAAAGAGTTCTCTCTTTCTTCAACTGATCTGTTC CATTCCCCTGCAGGTTTTGTTCAGTTATCCCTTTCTTACACTGGTGCTTCCCCTGATGTTATGGCGATTTCAACAACGCC TACAGGGTTGTCCTCACATGTCACTGAGCAATGCTCAGAAACTTCTGAGTCATTGGCCAGGGATTTGGATAAAATTGAGT TCCCAGATCCTAAGATTGCAAATGAAGACCACTTGATGGTTTCAGAATATTTTGGCATTCCATGTGAGGAGACTCAGTGC TCTGATAGCTTGGCCACTTCTGATGCTGAGAATCATAGTTCTGAAGCCGGTGTTCGTCTTGTTGAAAGTTTCGCAGCATG CAGTGTTGAATCTGCCCAACCTCCTAAGGTTGATTCTCCACCCAGCAGTGTGTCAACAAATGGGGTTTCTTCTCATTCTG CACCTGCAAGCTCAGAATCATCTGACGCTGCTGCTTCTAAGTCTCCCGCTCAGGAACAAGTTTCAGGCACCAAAGAAGAT AAAAACGTGGATGATAAAGTTGGTGAAAGCAATTCCTCAAATGGGGCTCAGAGAGACACATTTCCTAAGCCTGTTGTAAC TGTGAACATTGAGCCAGAGCCACAGATGGTGCAGCAGGATATTGTTGACATGTACATGAAAAGCATGCAGCAATTCACCG AGTCATTAGCAAAAATGAAGCTTCCTATGGACATCGAAAGTGAACCAACTAGTTCAGGAAACTCAAGCACTGAGCAGAAA CTACAGCCACCAAAGAACAGTACCTCCCGTGTGTTTTATGGGAGCAGAGCTTTCTTCTGA
CDS sequence (LotjaGi6g1v0149800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCCCCCCAATCTGTTGTGTCACCCTTCAGGAGCTTGGTTTTGGGTGAGGGTGAGAAGCACAAGTCTAAGGACAT TGAAGTCAATGGGAAGGAAGCAGTCATGTCAAATGTGGAGGAGTTCCTTGGAGTGCTTGACGTTTTCGTGCACCAAGCCA GGGACATTCAGAACATTTGCATATATCACAAGCAAGATGTTTATGCTAAGATTTGCCTGACTAGTAATCCTGAGAATACC GTTTCTACTAAGACTATCAATGGAGGAGGAAGGAACCCTGTCTTCAATGATAATCTTCGTCTCAATGTTCCGACTATTGA GTGTTCTCTCAAGTGTGAGTTATGGATGCTTAGCAGGGTGAAGAATTATCTTGAAGACCAGTTGCTTGGTTTTGCTTTGG TACCTTTGTCTGAAGTACTAGTCCAGAATGGGAAACTGGAGAAAGAGTTCTCTCTTTCTTCAACTGATCTGTTCCATTCC CCTGCAGGTTTTGTTCAGTTATCCCTTTCTTACACTGGTGCTTCCCCTGATGTTATGGCGATTTCAACAACGCCTACAGG GTTGTCCTCACATGTCACTGAGCAATGCTCAGAAACTTCTGAGTCATTGGCCAGGGATTTGGATAAAATTGAGTTCCCAG ATCCTAAGATTGCAAATGAAGACCACTTGATGGTTTCAGAATATTTTGGCATTCCATGTGAGGAGACTCAGTGCTCTGAT AGCTTGGCCACTTCTGATGCTGAGAATCATAGTTCTGAAGCCGGTGTTCGTCTTGTTGAAAGTTTCGCAGCATGCAGTGT TGAATCTGCCCAACCTCCTAAGGTTGATTCTCCACCCAGCAGTGTGTCAACAAATGGGGTTTCTTCTCATTCTGCACCTG CAAGCTCAGAATCATCTGACGCTGCTGCTTCTAAGTCTCCCGCTCAGGAACAAGTTTCAGGCACCAAAGAAGATAAAAAC GTGGATGATAAAGTTGGTGAAAGCAATTCCTCAAATGGGGCTCAGAGAGACACATTTCCTAAGCCTGTTGTAACTGTGAA CATTGAGCCAGAGCCACAGATGGTGCAGCAGGATATTGTTGACATGTACATGAAAAGCATGCAGCAATTCACCGAGTCAT TAGCAAAAATGAAGCTTCCTATGGACATCGAAAGTGAACCAACTAGTTCAGGAAACTCAAGCACTGAGCAGAAACTACAG CCACCAAAGAACAGTACCTCCCGTGTGTTTTATGGGAGCAGAGCTTTCTTCTGA
Protein sequence (LotjaGi6g1v0149800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSPQSVVSPFRSLVLGEGEKHKSKDIEVNGKEAVMSNVEEFLGVLDVFVHQARDIQNICIYHKQDVYAKICLTSNPENT VSTKTINGGGRNPVFNDNLRLNVPTIECSLKCELWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHS PAGFVQLSLSYTGASPDVMAISTTPTGLSSHVTEQCSETSESLARDLDKIEFPDPKIANEDHLMVSEYFGIPCEETQCSD SLATSDAENHSSEAGVRLVESFAACSVESAQPPKVDSPPSSVSTNGVSSHSAPASSESSDAAASKSPAQEQVSGTKEDKN VDDKVGESNSSNGAQRDTFPKPVVTVNIEPEPQMVQQDIVDMYMKSMQQFTESLAKMKLPMDIESEPTSSGNSSTEQKLQ PPKNSTSRVFYGSRAFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 417 | 417 | 1.8E-253 | – | |
| PANTHER | 1 | 417 | 417 | 1.8E-253 | – | |
| Gene3D | 40 | 185 | 146 | 1.2E-14 | ||
| SUPERFAMILY | 42 | 174 | 133 | 2.98E-18 | – | |
| Pfam | 44 | 151 | 108 | 4.4E-9 | ||
| SMART | 45 | 148 | 104 | 1.6E-5 | ||
| MobiDBLite | 269 | 342 | 74 | - | – | |
| MobiDBLite | 273 | 314 | 42 | - | – | |
| MobiDBLite | 381 | 417 | 37 | - | – | |
| MobiDBLite | 385 | 411 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0149800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…