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LotjaGi6g1v0158000.2

Overview

Field Value
Gene ID LotjaGi6g1v0158000
Transcript ID LotjaGi6g1v0158000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Tetraacyldisaccharide 4'-kinase; TAIR: AT3G20480.4 tetraacyldisaccharide 4'-kinase family protein; Swiss-Prot: sp|Q8LEA0|LPXK_ARATH Probable tetraacyldisaccharide 4'-kinase, mitochondrial; TrEMBL-Plants: tr|A0A151SBR8|A0A151SBR8_CAJCA Tetraacyldisaccharide 4'-kinase; Found in the gene: LotjaGi6g1v0158000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:43912428..43917095) extracted from Lotus japonicus Gifu genome v1.2.

CTCTCACATAGTTCGCGCTTGTTAGCTTGAAGAAGACACAAACCGAAACAACAATGGTTAGATGGAGAAACTGAGTAAAG CAGTGAATGACATAGCCTACACTCAGAAATCGAATCTCCGCAACCTATCTCCACTTCACCGCTCTCTCCTCCCTCTCCTT TCCATCGCCTCTTCTCTCTACAAACTCGCCCTCTCACTTCGCCACTCCCTCTACCACCACCACTTCTTCCAAATCCACCG GTAACCAACCAACTAACTCATTATCATTTTCCTTCTGTCTGTTTGGTTTCTGGGAAAATCAAAACGAAAATGGAAATTAA CATTGAGGAATCGGTGTTGTTGTTGAGTTTAGGTTGCCAGTTCCTGTTATTAGCGTCGGGAATTTGACATGGGGAGGCAA TGGCAAGACGCCCATGGTCGAATTCATCGCTCTCTGCTTCGCTCGTTCCGGAATTTCACCCCTCCTTCTTTCTAGGGTAA ACAAACTATTTTTCTCTCCTTTTTATTTTCCCTGTTTTTTAATAGTTCAACTTTCTAATTAGCATTGCATCTTTCTGAAA TGGTTAATTCAGCTGGAGAAATTATTAACTGGGTGTTTGTTTTCTCATGGGGGATTTTTGTTTAATTCAATGAGCAATTT AGCATGCAGGTTGACAAATAGGTAATTGGTTTGGATAAATTGTGAATTCAGTTTATGGTTAATTATTATTATAAGTACAT AAGGGTTAGTTTTGATTATTGGCTGATGAGCAAGTGTATGTTTGGAAATGAGCTATGCACATACTCCGGAAAACGTTTGG GCAAACTCTATAAATGTGAATCCGGAGAGTAAATGTGGTGACGGGACCATGGCTAAAGTGTCATTAATTACTTCCTTGTT AAAACAATGGCCTTTTTGGTGATGACCTAAGTTATGACTGATTTTCTTGGTTTTCCATATGCTCAAAGTTATTGAAGATA TTGCACCGTTCGTTCGTGTCAAATTCGAACTGAAGTGCTAATGTCTGTTCACTTCGCATTTCATGTTTTAGTCACTAAGT TGCCCAGGTTGATTCATGTATCTCTTCTTTTGGCAGGGTTATGGTGGCGGGGATGAAGTCAACATGCTTCGGAGGCGTTT ACTTGGGACATCAACTAAGTTTGGTGTTGGTGCGAATCGGGCTGCAGTTGCAAGTCATCTTATTCAAAAACATGGCTACA TTGATATTCGTAAGGGTTCATGGTATGAGAAGCAAAAACTTGATTGTAAGGTCCAGAGTTCTCTTGATTCAGAAAAAATC GGGGTTGTAGTTCTTGATGATGCAATGCAGGTAATACAACTCTTCCCCTCACTTTGTTTACCCATTACTTCGTGATTTTC TACTTAACTTTGCTCCAATTGAGATCTGCTACATTAGTTACATTCATTCTTATTTTGTTGGAGCTGCTGTTTTGCTTCTA GAGACTTATATGCTTGGACTTGGTATAATTTTTCTTTGACATAGCATTTGCTCTAAATCGTATTATTAATATGTAAGGTA GCATTGGAGCTTGTGGCGTGATTTGGATATTGTAATGGTTAACGGATTAACTCTTTGGGGTAACCATCAACTGCTGCCAC TTGGACCTTTAAGGGAACCATTGACTGCACTCAGACGAGCCAATGTAGTTGTAATCCATCATGCAGACTTGGTATGTCAG AATTTTATCCGCATTTCCTTTTTCAAGGAAATAATTTCCAAAAGTTTCTTGGCAAGTTATTCTTTCATTATATTGCATTT GCTCATTTAGGTGGCATGTAGTTTTGCAGATTTATAAAAATATGGCATAGTACTGAAATTCATGCTTTGGAGATTCTCAG GTTTCTGAGCATACTATCCAGGATATTGAGTCAATGGTCCGAGGAATAAAAAAGTCTGTTCCCATTTTCTTAACAAAAAT GGATCCCACATACTTATTTGAGGTGGGAATTATCAATGCCAAAATACCATTGACGGCTCTTCATGAAGCTACAGTATTAT GCATTTCTGCTATTGGTTCTGCAGAATCTTTTGTGAAGAGGATTCAGAAGGTATTCCTCCTTTAAAATATTTCCATATCT AAATAGAACTTATATTTTATGATGATCATGGAGACCAATTTAAATCGAAAATATTAATTGAAATTTTCATTTTAACATGT TAAAGCTTTTTGTAAATTTCTTGAACATGAAAGGATTCTACTATGAAGTGAAGCAACTAAACGGTGGATAAATGAAATAG TTATGTTCTGGAGCTGCTTGTCATAACAGTTTAATATATATTGTAGTATTCATAGTTGTCAATCGCGGATTGCAGAGCAT CGCGGCCAACCAAAAACCTTGGTTGGTCAGTGGTTGTTTGCTCGAGGCAGAGGCAGAGACGAAGTTGTTTTTCTCATGTA GTGGAGGCAGAGGCACGCCATCTCTGTTTCACATTTAGACTTTTTTTCATGTGGAAATTCCTGAAAGCCCCTAAAAGTAG CCATAAGTCAAGAGCATTTCTCATAAGTCCGGGTGGCCTACCCTGTTGTGTCGAGATTGCATGCAAAATGCGGCGATGGT GAAGTGAGATGTGATGGGACACACCGTCGTAGTGGGTGGGTGCGATGTGACGCACTGTGGGGATCACAGCGACCACATGC GATTAACAACATAGGTAGTAATACTGTAATATATATTAGTAAAGTATCATCGTCTGTGCAATTGAATTAAAAGACAGAAA GGGGTGGTGTCCTAGACATTACGATGACCTAAAGTTTACTAATAACTTCAAGTTAAGTCCTGTTTGGAAGAGTTATTTAA GTTTATCTATAGCAGAAGTGTCTTATACATTCGCACTCATCTTCTCTTCCATCTCCATTTCACCTCCTTTTTCTTCTTAT GTCACACTTCTTTTTCCATCACATCACCCTTCATATCTCTTTTTATTTCTTTATCTCTCTACCCGGAGGTGGAGACGGGT GGTGATTCTGGTGAACAAAACATTAGTGTTAAACAACTGTTTGAGAGAGCTTTTGTAAATAGCTTTTGACCTGCCTATAA GTTGTTTTAAGTTTATTTTCATAAGAAGTCGAGATTAGCTTATGAAGAAGCATTTATGAATAAGCGTTGATGCATAAGCG CTTATTTCCATAAGCGCCTATGCATAAGCGCTAATTGCTATAAGTGCTTAATTAAGTTGTTTACCCAAACATATGCCCTT AGATTTGCAACTAAAAAAGTAACATTTTAAACCTTAGATAGAAAAGGTTGCAGAGAGAATGTCATGCCTGAATAGACAAA CTCTGGGTACAGCAATTGAATAGACTGCAGGCCATTCTTCAACATGAAAGGATTCTACTATTAAGTAAAACAACTAAATA GTGGATAAATGAAATAGTTTAGTGCTTGAGCTACTTGTCATAACTGTTTAATAAATGTTGTTGGAACTTATATTCGAAAA GTATCAACGTCTTTGGAATTGAATTGAAAGACAGACAGGGGTAAATGTATCTTGCAGCCTTGCAAGCATTTCAATGATCT ACACCAACTCCTTGTCTGCAATGCTATGTAGCTAATAGTATATATATTTTAAGCGGGTTTTCTCTTCTCTTTGTATTTCT AACGTGCAGATAACTTGTTGCAGATGGGAGCACTTTATGTTGATCGAATCGATTTCAGTGATCATCACATGTTCCATACC AAGGTACATTTATCTCTCCTGAATTTGGAAAAGATGGTTTATTGACTGTTTATATCATGTTATTTCAAGTAACCATTTAA ACCGTGCATATCTTTTGACACTGCTGTTAAATAAATAATCGTGTGTGAGAAAACTGCCTGAGGATCATTTTGTGTGCTGT TTACTTTAATTATTTGCATATTGATTTATTTTGAATTTTCTCATGCCATTTATTTGCATTGACTAAGATGCTAATATCAT ATTTTCAATTAATCCAGGATATTAATATGATCAGAGCCAGACTTGGAGAGCTAGAGGGGAAGTTTGGTTCCAAACCAATT GTTGTAATAACTGAAAAAGTAAGTAGACATGCTTCTCATATTTTTGTTGCTGTGTATAATTTTGTTGCTGTTGTAATAAC TGAAAACCAATTGTGTATAATTTTTGTTTCTGGATTCATGATCCCTTAGTTAAATTCTCGCTTTCGCAGGATTATGATAG GGACCCAGAGATTCTTCAGCAATTATATCCATTTAAAGTTTTTGTTCTCTGTTCTACATTGAAGGTTTTGCCCTATAGAG GAAGCACAGAGGATAGTTTTAAGAAATTTCTGCAGGACCAATTAAAATTAGAATTTCCTGCAGAAAATTAATCTTAGGTT GTTGTAAGCTTTTTCAAGCATGCAGTTAATATACCAAATATTGTTGGTTTTTTTTACTAATTATACAAGATACCGTACAA AGTTGAGAAAAGGCAACGCCAATAGATAGCATGTTTGGAAGTCCTCATACCATTGATTCCAAAGGCAAAATCAATTTTAG AGAAGCTTTTATGAGTAGCTTTTAGGCGACATAATTAATTGAGAAAAAATTAGCTGATCCAAATATGCTTTGAACCCATG ACATCATGTACTTGACGGTTGATAGAACTTTTTTCTTGAGTTAGGTTGTTTTTGTGAATACTCATGTTATTGAGCTTTGC ATTGTCGCACGGGTACTTTGAAACTGGC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0158000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTCGAATTCATCGCTCTCTGCTTCGCTCGTTCCGGAATTTCACCCCTCCTTCTTTCTAGGGGTTATGGTGGCGGGGA TGAAGTCAACATGCTTCGGAGGCGTTTACTTGGGACATCAACTAAGTTTGGTGTTGGTGCGAATCGGGCTGCAGTTGCAA GTCATCTTATTCAAAAACATGGCTACATTGATATTCGTAAGGGTTCATGGTATGAGAAGCAAAAACTTGATTGTAAGGTC CAGAGTTCTCTTGATTCAGAAAAAATCGGGGTTGTAGTTCTTGATGATGCAATGCAGCATTGGAGCTTGTGGCGTGATTT GGATATTGTAATGGTTAACGGATTAACTCTTTGGGGTAACCATCAACTGCTGCCACTTGGACCTTTAAGGGAACCATTGA CTGCACTCAGACGAGCCAATGTAGTTGTAATCCATCATGCAGACTTGGTTTCTGAGCATACTATCCAGGATATTGAGTCA ATGGTCCGAGGAATAAAAAAGTCTGTTCCCATTTTCTTAACAAAAATGGATCCCACATACTTATTTGAGGTGGGAATTAT CAATGCCAAAATACCATTGACGGCTCTTCATGAAGCTACAGTATTATGCATTTCTGCTATTGGTTCTGCAGAATCTTTTG TGAAGAGGATTCAGAAGATGGGAGCACTTTATGTTGATCGAATCGATTTCAGTGATCATCACATGTTCCATACCAAGGAT ATTAATATGATCAGAGCCAGACTTGGAGAGCTAGAGGGGAAGTTTGGTTCCAAACCAATTGTTGTAATAACTGAAAAAGA TTATGATAGGGACCCAGAGATTCTTCAGCAATTATATCCATTTAAAGTTTTTGTTCTCTGTTCTACATTGAAGGTTTTGC CCTATAGAGGAAGCACAGAGGATAGTTTTAAGAAATTTCTGCAGGACCAATTAAAATTAGAATTTCCTGCAGAAAATTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0158000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVEFIALCFARSGISPLLLSRGYGGGDEVNMLRRRLLGTSTKFGVGANRAAVASHLIQKHGYIDIRKGSWYEKQKLDCKV QSSLDSEKIGVVVLDDAMQHWSLWRDLDIVMVNGLTLWGNHQLLPLGPLREPLTALRRANVVVIHHADLVSEHTIQDIES MVRGIKKSVPIFLTKMDPTYLFEVGIINAKIPLTALHEATVLCISAIGSAESFVKRIQKMGALYVDRIDFSDHHMFHTKD INMIRARLGELEGKFGSKPIVVITEKDYDRDPEILQQLYPFKVFVLCSTLKVLPYRGSTEDSFKKFLQDQLKLEFPAEN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR42724:SF1
1 313 313 5.3E-128 –
Pfam
PF02606
1 311 311 2.3E-48
IPR003758
PANTHER
PTHR42724
1 313 313 5.3E-128
IPR003758
CDD
cd03112
139 185 47 0.00816461 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0009029
Molecular function Tetraacyldisaccharide 4'-kinase activity Catalysis of the reaction: 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-(1->6)-beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate + ATP = ADP + 2 H(+) + lipid IV(a).
Subterm of
GO:0009245
Biological process Lipid A biosynthetic process The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0158000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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