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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0170200 |
| Transcript ID | LotjaGi6g1v0170200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Agamous MADS-box transcription factor; TAIR: AT3G58780.5 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|P29381|AGL1_ARATH Agamous-like MADS-box protein AGL1; TrEMBL-Plants: tr|I3S4H4|I3S4H4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0170200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:45602120..45610067) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAACCCTGCAGTACTCAAAATTGTAATAATGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGTTTGACTGTGTGTTTGCATACATTTCACATTGGGAGAGAAGTGATTCTGAGATATTTAACCACATAAT GAAAATGACATGAAATAGTTTTTATGTATTCACACCAACTTAATTTCTCTTCCATCTAACACTAGTTTAGATATTCTTTA ATTTGAAGTAAAAAAGCCAAAAAACTGAAAATCCAAGATTCAAAATGACTCTTTTTTCTTTTTGGTTCAACCCTGCAGCA GTACTAGTCTCTGTAAGGCATTAAAACTTGAAGCTTGGGGAATTTTGCGTGCAAACTTTTATGTCCAATGTCCCTCTCAT TGAAATTTGATCAAACCCCACAAACAAAGTCACTTTCATAAAGACCCTTTTATTATCTCCCTCTCCTTTTTCCCATACAT GATCAAATGGCATGGATGGCTAATGGAGCTTGAGAGGTGAATATCACAACTCTCTCTCTCTCTCTTGCTTTAATTCTCCA ACACGAGAAGTTAAATTAATTTTAAGTGTGAGTTGGGTAATTGTTGGAGGGTCTATTTTCAGTCCATAAATACCTGTCTA CTAGGCCAACCCACTTCCATATTTGCAACCTCTTAATCTGAGTTTCAGCTGAGTGATAAGCCTTGTTTGCTTCATTCTCT CATCCAAAAAGATTCTCTTTTCATGGTGAGAGACCAATTTAATTACAGCATTCCAAAATCTAGATCACACAACTAAACCA TTAATTCAGCATATACCATGTTTCATTTTTGTTTTATGTCCTTTGTTCTTGACTTTTATTTGGTTTTAATTTGTTATAGA TGGAGCTTCCAATTGATCAAGTTCAAGAAGGGTCTTCTTCTCAGAAGAAGATGGGAAGAGGGAAAATTGAGATCAAGCGG ATCGAGAACACCACAAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCTTATGAGCTATCTGT TCTGTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCAAGCCGTGGCCGCTTGTATGAGTATGCCAACAACAGGTTCTTAC ACTTACACAACCTCCAAATCTTGAAACTTTCTCTTATCCTCTTTTAATTAATCAAGGAAAAAAGGTTTGATAATTTGTCC ATATATATATATATTTTTGAAATCTAAGTAGAAAAAAATTGTTACTTCAAAAAATGGGGTTTATTTGGGGTTAAGACCAG GGCTTGCATCTTTTTGTTCAAATCAAGTGACAGTTTCCTTCTCCCAAAACTTATGTTTTTCAGTTTTTTCATCAATTTGT ATTGTTTGCATCAGCTATCTCCTTTACACTTCCTTGCTCTATTCTTTCTTCAATTGTTTGTTTCAAAGTTTGCAGATCTG TGGAAAGAGATAGAAATATAGGAGTTAAAGTGAAACTAGGTGGGGGTAGAATATGTAATAGAAGAACAAGTAAAACAGCT TTTATTTAGGGTTACAAAGATTTGCAGGTCAGATATCTTAGCTTCTTTGTGTATATTTCTCCCATGCTGCTATGCTTTTA CCAATCCTTTTTCTTTCTCTCTCTCTTTCCTTCCATATGTCAAGTATAAAACCTATACAAGCTCTGCTACATAAAGCTGT CATGCACTCATGGTCCTCTTTTCTTCCATCATGACTCTTTCTCTTGTACTCTTAATTAACTTCTTGTGCCACAAATCCAA TTGCAAGTTAGGGTTTCAGTTTTTGTTATATATAAGTAGCACCCAAATCCACTCTGATTTAAGACTATAGGGCAGTGAAA ATCTAGATATATACACCAATGAAAACATCTTAATTTTTTTTGGTCTTTAATGTGTAAACTTGTTCGGGAAACCGTGTCTG TCCTCAAAACAAATGATTTTATAGGGTTCGATCTTGTAATCTTATCCTTACAGAGATCTAGCTCGCCTACCACCAGAACA ACCTAATTTTGCAAAAGGATTTTTTTAAAAAATATTTCTCTTATTTGTCAAGGTGGTAATGAACAAGAATTAAAACAAAG TATTAGGGTTTCTGGATAAAAAGATTTCAGATTCCTTTATTTTGATTTTTTTTAAAATGATTCCTTTAAAATTGAAACAG ATTTTCTTGTCGTTCTGCCTGAGTTTAGTTTGTGTGTAGAGGTGCGTGAAAGTCTGATATTTTTCCCCACGCTCATAATT TTTGTCCTTTACAATATGGTCAAGGCCATGCTAGCTTCAGTTAGGGTTCTAATTTCTAAAGTCAAGGCCGTATGGTTATG GGAATATCAATCAATAACTCTTTTCTTCCAAAGATATTTCTGGGTAATTTTGAAATATTCTGGAATTACTTAGCTTCATT TCTGTATAAATTTCTTGAATTGATTCACTAAAACGTGATGAAAGCAACAGTTTGGTGGGCATTTAAGTAAAATCTATAAA CTCAAGTAAAAAAATTGTGTGAAATATGAAGATGTTATTCTATAAGTTAGAATTTTGGGGCTCTAAATCTAGCATCTGTG CAGGTGATAGATGTAAACACTGCTATCAATTTGTTGTGAATTAGTTCCGATAATAACAAAATTGTAGTTATTTGGGAGCT AATCTTCAAGCAATTATTTTATAACTATTTTTGAAGTTACAAATCTTAATTCTACCTAAACATATGATGGACGCTAAAGA AAGTCTTTTCAGAAAAAAATTTGCAAAATAAAACAAGGTCACGTGTGAGTTTTTCACCAAGGACATTTAGGGCATACATT GTGATATTATTATTCTTCTGCGGTTCTTCCTTTTTCATTCATTTTTATATGCAGTAGTTAAGTTCATTTTTCTTTTCCAT GTCCTAGACTTTTCAAAAACAAATATTAGTAGCCAAAAATAAGTAATTATATTATATTATTTATATACTGTTTCAATGTT ATTCTTTCTGGATCGTTTGTTTTCTACCCTGAGCTGCTAAAAGTAACAGCATGATATCAGATACTGAGAATAGCTAAAAG CAAAACACCACTCTCTCTCTTATCTTTTAACATTGTTTTCATGTTTAAGGAAATAAAGGTTCTATTCTTGAAGTCAATTT CTCTACCTACTCTCAATTATGTGTTTTGGAAATTTCAATAGAAAAGGAAGGTGACATTTACATGATATGTATGGCCTGAT GCATAGGTCAGAGGCCTCTTTGTGCTTTTGCATTAATTAACCATTCATAGGTAAATATTGGTACAACTAGTTTGTGTTTG AACTTAAGAGCAAGTTCAGAAAGAAAGAGAGAGATTTTACATATTCTTTGGAATTGAAAGAATGGAACTTGATATACACG GATTCAGCTTCAGCTGCTTTGTGTTGATCTAAGAAATACTTAGCCAGAGAAAGGTAAGAAGAAGAGGGAAAAGAGAGTAC GATCCAATGGGAAGTTCTGAGATGATGACATACATTTCACAGTGCATGCACTGCCACAACATCTTTAGTTCTTTGGAAGC GAAACTAGAACATGAAATCTTCAAAAGGGTTTTATGGTAATTAATTGAGGTACAAAAAATAAGGCTCCTATGGTTATTAC ACCATGTGTAATGAGGAAATGACATGATTATTTCTGAACCTAGGAAGAATGCTTATTAATTATATATACTTGAGCCAATG ACATTGTTGGATCTTGTGCCACCCTAGCAGGTACAAGAGAAAGTATTAATTTAGAGTATCATTTGGATTTTGATTTTTTT TAAAAATAGTGAGTTTTAATTTATTCAAGAGACTAAATTCAGTGCAACACTAAAGTTGCTGTCGTATGACCAAATGGTCA CAAGTTCCAGTCGAAAATAAGCCTCTTGCAAAGAAAATACAATTTAAGATTGCTTACATTCGATTTATAAGGTGGGTTCG GCGCCTCCTTAAACCTCTCACATATAGTGGGAGCTAGGTTTCTCATGTGAGTTTTATTCAACACTTACTCAACTGTAAGT CTTTGGTGGAAGGATTGGGGGATTTAAAATAATGTAATTAATCAAAGAAATGTGATAGACAAATATGCATATCTTAGTCC TAATGGTATTTGAGCTGGTATGATCTGGCCATGATTTTGCAACTCTTGATTAAACTTATGGCTTGAACCTTATTTACACC CAAAATTTCATTTGGTGAAGTCTAATATATAGTTTTTTGGAGCATTGGAATTAAAAAAAATTCATCTCAGGGGACTTAAA GAATCTGATAGAAAATGAAATAGAAAATATCAGAAATTGTATCACGTGTTTCCGTCAGTAAAGTTAGCTTCACTTATGTT ACAGTGTTTGTTCTATCCCACTTTTACTATTGCATACTTTGATTGCAGTGTTAGAGGAACCATTGATAGGTACAAGAAAG CATGTGCTGCTTCATCAAACACAGAATCTGTTTCTGAAGCTAATACACAGGTAAATCTATTCAGATAATGTCAAAGATTA CTGGTTAAAATCTATCCAATATTTCTCTTAAGGTCTAGAGTTTGATGTATTTTGAAGTATGACCTAACCTAAAAGCTGAG GGCAATTCTACGGTGGTGCACCTATGAACCATGTTTTTAGTACTAACAACTAGTACATGTTATTTACAATATGCTCTTTA TGTGCTAAAATTAATTTGCAGAGAAACCCTATTAACTTGTGAATGTGTACGGTAGATGAAACCTTAAGTTAGATCTAATT TTACCTATCCATTAAGCACATGCAATCATCATATACAAATTAAAACATGGAATTTCCATCTTGAAGATGAGAATGATGAG TTTATTAGGGTAATTTAATTCTTCATCTTTGTTATATAGACACAAGTTACATTAATTCATTATACTTTAACTCTTATCCA GAAAGTTCACACACTAACATTGTTTACTATTATCAGTTTTACCAGCAAGAAGCATCCAAATTGAGAAGACAGATTCGAGA TATTCAGAATCTAAATAGGTGATAAGTTTCTTCCTTGGTACATATTTATATATAGCAGACCTTTAATTTCCATTTATTAA AATAAACTTATCCATGAATTTTTCTTTCCAGGCATATCCTTGGTGAAGCTCTTGGCAATCTGAGTCTCAAGGAACTGAAG AACCTCGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGGTATTTACATAAGCTCAGCATGACAATTG TTTAAGGCATTTGGTTTATGGTTAAGTGTGTAGATGTGTGTGAGACACACAAGCACACACACAAAAAATCATATGGGGAT TTATGAGATCCTTAACCTTAAGGTGTCTAATACAAACCCAAACATGCACTAATGTTATGTGCAAAAGTTAGCAAAAAGTA GATATGAGAGTTATTTGAGTTAGTATTTCAAAATTCTATGTTTTGGCCTATTATTATGAAAATATAGATTATTATCCTTT CTTTGACATATCTTTATTCTTTTGGACTGATGCACTGAAAATTATCCAGCATGAGACATTGTTTGCTGATGTGGAGTTCA TGAAAAAACGGGTAATCATCATCTCCTTCGTTGTTGTTAATATCTTTATATGTCATAGCCAACAAAGTTAGGTAAAAATG AGAACAATTGTGTATATAGACATTCAATTTAACTTTCTTTCTATAGCTAGAAACAAAACAACAAATATTTTGATAAGGTT GGGTGACTGTGTGGGCTAGATGCCAGTGGTCTAAAAACATTTAATCAATTGGACTTAAGAACTCTCAAGGTTATAATTCA CTATAGTCACCTTAGGTTTTATATTGGACTTTTTTTTTCAACATCCCCTACAAGCCAAATCGGACTAGTCAGGTTAGATT TGTTTTGCATAGGCTTGTATGTAAGCGGAACCTCAGGGGTCGTAGGTCGTGTTTTGGGTTTATACTCCTTTTATCTGAAC TTGAGTCTCAAGGCTCATGATTTATTTTAGTTGATAATTGGGTATTGTTAGTTCTTTTTTTTATTGAGCCCATTCTTTTT TTTTGGGTTTTCTCAACTGTGGGCCGTTGACCATTTGGGCTCTAATGGCACTTGTTGGACTTTGTGATGTGGAGCAAAAA TATACTTTAAGGATGGTTGGGTGTGCAGGCTAAGATGTGAGTGTAGTGTGTGGTAAAAAACCTTAACAATTCGACCTTGA ACACCCAAGGTTTTTTTTCGGTAGGCACCCAATGTTATAAACCATTGTAGTCCAATCCGTCTATTCCATGTGAGACTTAT TTTTTAATTTCAACACTCCCCTTCAAGTTTAACTGGACTGGTAAAACTAGACATGTTTTGAAAAAACTTGTACTCAAGTA GAATCTTAGAAATTGTGTTTTGAGCTTGTGCTCTTTCTACATGAACTTGGGTTTTATAGACCAATGACTTATTTTAGTTA ATAATTGAGTGTTAGGACAATTCTTATTTTATTATTGAGCTCATTATTTTTCTTTTTCTATTTTTCTTTTAATAGTGGTT TATGAGACCATTTGAGCTTGGATCTCACTTGTTGGAATTGGAAGTCTAGGCCGAAATATACTTTTAGGTTGGGTTAGTGT GTAGGCTAGATGTTGGTGAGGTGTGTAGTCCTATTTGTTTAATGCAATTGGACTTAGAACATCCAAGGGGTAGGGTTTAG TAGACAGGCTGAAACGGGACTAAATGGAACATCCAACGTTGCATTTAGTCCCCTTATGAACCACCGTTTGTTTTGCGCTG GTACCACTGGTACCTAAAATTTACCTGAAGTTGAGTGAGTGTGTGGGCAAGAAATGAGTGTGATGTGAGTGTGATGCATG GTCCACGAACTTAAAACCTCCAAGATTATACACAATTGCAGAGTCCCCTTTTAGTCTTATTCCATTCCATGTTAGACTTG TTTTCTTTTCTCAACAGCACATGTAAAATTATATTTTAACCAAGTAACAAATATTAAATGGCCATTCTAACAATTTTGGT GCTGCTCATTGTTTATGTGTTCATATATTGAGCCTTCTACTTGTACTGCAGGAAATTGAGCTGCAAAACCATAACAATTA TCTGCGAGCTAAGGTCTCTAGCTAGCTATCATAATGTGAAATTGCTGTGTCATTATTAATTGAGTCAAATGAAGGATATA TAAAAGAAATTATATTGTTGATATTGCTGGCTGCAGATAGCTGAACATGAGAGAGCTCAGCAACAGCAACAGCAACAGCA GCAGCAGCAACAGAATTTGATGTTGAGCGAGTCATTACCTTCACAATCTTATGATCGGAATTTCTTTCCTGCAAATCTGC TTGGTTCTGATAATCAATATTCGCGTCAAGACCAGACAGCTCTCCAACTTGTGTAAGAATTTATCTTATTCATCTTATTT TTAAGTTTACTACTGGTTTTAATTAAGATGCTACTATGCTAGCTGTTATTTTATTGTTCATGACTTTGCTTGATGATTGA TTTCCCATAGCTACATTTAATATTTTGACATGCTTTATTCATCACTTCCCTTTTTACCTTTGAATGCAGCTGATGTTGTG CTGGAAAATCTGATGGAAGTACTTCAACAATCTTCATATGGTTTAACTATTTGAATAACTGTATTTAATTCCTATATAGT GGAGACCCTATACTAGTGCCTTTAGAAATTTACTTTACTAAATTTCTTCCTTAAGTACTAGAAATTAAAGAACCATCACA TACTCTATACAATAGTGTTTTGTATCTTTTAAATTAAGAACTTGTTATAAACCCCCACTCTCTGTATTATTCTCTGTCAT TTTAGGCCTACTGATACCTGTTGCTTATATTATTAAGCTTTTTCTGATGATGAAAGAAACTAATACTAAAATCCACCAAC ACCTTCATGGTTGTTTAAGTGGTAAGCAAATTAGACTCCCTTGAAATGTCTTCACAAACACCGGAGATATAGTTCACTAA TAGACTGATGGATAAGGAATTTGATGCA
CDS sequence (LotjaGi6g1v0170200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGCTTCCAATTGATCAAGTTCAAGAAGGGTCTTCTTCTCAGAAGAAGATGGGAAGAGGGAAAATTGAGATCAA GCGGATCGAGAACACCACAAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCTTATGAGCTAT CTGTTCTGTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCAAGCCGTGGCCGCTTGTATGAGTATGCCAACAACAGTGTT AGAGGAACCATTGATAGGTACAAGAAAGCATGTGCTGCTTCATCAAACACAGAATCTGTTTCTGAAGCTAATACACAGTT TTACCAGCAAGAAGCATCCAAATTGAGAAGACAGATTCGAGATATTCAGAATCTAAATAGGCATATCCTTGGTGAAGCTC TTGGCAATCTGAGTCTCAAGGAACTGAAGAACCTCGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAG CATGAGACATTGTTTGCTGATGTGGAGTTCATGAAAAAACGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGC TAAGATAGCTGAACATGAGAGAGCTCAGCAACAGCAACAGCAACAGCAGCAGCAGCAACAGAATTTGATGTTGAGCGAGT CATTACCTTCACAATCTTATGATCGGAATTTCTTTCCTGCAAATCTGCTTGGTTCTGATAATCAATATTCGCGTCAAGAC CAGACAGCTCTCCAACTTGTCTGA
Protein sequence (LotjaGi6g1v0170200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMELPIDQVQEGSSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV RGTIDRYKKACAASSNTESVSEANTQFYQQEASKLRRQIRDIQNLNRHILGEALGNLSLKELKNLEGRLEKGLSRVRSRK HETLFADVEFMKKREIELQNHNNYLRAKIAEHERAQQQQQQQQQQQQNLMLSESLPSQSYDRNFFPANLLGSDNQYSRQD QTALQLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 14 | 205 | 192 | 1.7E-107 | – | |
| PANTHER | 14 | 205 | 192 | 1.7E-107 | – | |
| ProSiteProfiles | 19 | 79 | 61 | 34.132 | ||
| SMART | 19 | 78 | 60 | 1.1E-42 | ||
| CDD | 20 | 96 | 77 | 2.40072E-45 | ||
| SUPERFAMILY | 20 | 96 | 77 | 2.35E-33 | ||
| PRINTS | 21 | 41 | 21 | 4.6E-33 | ||
| ProSitePatterns | 21 | 75 | 55 | - | ||
| Pfam | 28 | 75 | 48 | 1.8E-26 | ||
| Gene3D | 31 | 124 | 94 | 8.4E-29 | ||
| PRINTS | 41 | 56 | 16 | 4.6E-33 | ||
| PRINTS | 56 | 77 | 22 | 4.6E-33 | ||
| Pfam | 103 | 189 | 87 | 4.7E-25 | ||
| ProSiteProfiles | 105 | 195 | 91 | 14.437 | ||
| Coils | 105 | 125 | 21 | - | – | |
| Coils | 178 | 209 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0170200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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