Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0178400.1

Overview

Field Value
Gene ID LotjaGi6g1v0178400
Transcript ID LotjaGi6g1v0178400.1
Lotus japonicus genome version Gifu v1.2
Description Flavonoid 3'-hydroxylase; TAIR: AT5G07990.1 Cytochrome P450 superfamily protein; Swiss-Prot: sp|P48418|C75A1_PETHY Flavonoid 3',5'-hydroxylase 1; TrEMBL-Plants: tr|A0A072UUU7|A0A072UUU7_MEDTR Flavonoid hydroxylase; Found in the gene: LotjaGi6g1v0178400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:47035655..47036504) extracted from Lotus japonicus Gifu genome v1.2.

GAATCTGTTCACTGCTGGCACAGACACATCATCTAGCATCATAGAATGGGCACTAGCTGAAATGTTGAAGAACCAAAACA TCCTTATAAGGGCACAGAAAGAGATGGATCAAGTGGTTGGCAGAGAAAGATTGCTTCTTGAATCAGACCTTCCAAAATTG CCATACCTTCAAGCAATCTGCAAAGAAACCTATCGTTTACACCCATCCACACCCCTTAGTGTTCCCAGAGTTTCAACTGA AGCATGTCAAGTCAATGGCTACTACATTCCCAAGAATACAAGGCTAAATGTGAATATTTGGGCCATAGGGAGAGACCCTA ATGTGTGGGACAACCCATTAGAGTTCTATCCTGAAAGATTTTTAAGTGGGGATGCAGAAATGATTGATCCTAGTGGTGTT GATTTTGAGTTGATTCCCTTTCGAGCTGGAAGGAGGATTTGTGTAGGGTATAGAATGGCTATTGTGGTGATTGAGTACAT TTTGGGCACTTTGGTGCACTCTTTTGATTGGAAGCTACGAAATGGGGTGGAGCTGAACATGGATGAGGCCTTTGGACTTA CTTTGCAAAAGGCAGTGCCTTTGTCATCTATGGTTAGCCCTCGGTTGGTCAGCAGATGCTTATGTTTGATTAATAGCATG CTTGAATTAGCTTCTATTTTATAAAAATCAATTCGAGTATTTAGAAGTTACTTACAGAAACTTCTCTCCATAATTAATTT TGGCTTGAGTGTCAATTGTTGAGAGTTTTCAAATGTGCACTAATTGATATGATGCATATGGTTATGAGTTATCTATTTAT CTATGCTTTATTACCTTATATCAGTTGCATATATTATCAGAAAAATTTAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0178400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGAAGAACCAAAACATCCTTATAAGGGCACAGAAAGAGATGGATCAAGTGGTTGGCAGAGAAAGATTGCTTCTTGA ATCAGACCTTCCAAAATTGCCATACCTTCAAGCAATCTGCAAAGAAACCTATCGTTTACACCCATCCACACCCCTTAGTG TTCCCAGAGTTTCAACTGAAGCATGTCAAGTCAATGGCTACTACATTCCCAAGAATACAAGGCTAAATGTGAATATTTGG GCCATAGGGAGAGACCCTAATGTGTGGGACAACCCATTAGAGTTCTATCCTGAAAGATTTTTAAGTGGGGATGCAGAAAT GATTGATCCTAGTGGTGTTGATTTTGAGTTGATTCCCTTTCGAGCTGGAAGGAGGATTTGTGTAGGGTATAGAATGGCTA TTGTGGTGATTGAGTACATTTTGGGCACTTTGGTGCACTCTTTTGATTGGAAGCTACGAAATGGGGTGGAGCTGAACATG GATGAGGCCTTTGGACTTACTTTGCAAAAGGCAGTGCCTTTGTCATCTATGGTTAGCCCTCGGTTGGTCAGCAGATGCTT ATGTTTGATTAATAGCATGCTTGAATTAGCTTCTATTTTATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0178400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLKNQNILIRAQKEMDQVVGRERLLLESDLPKLPYLQAICKETYRLHPSTPLSVPRVSTEACQVNGYYIPKNTRLNVNIW AIGRDPNVWDNPLEFYPERFLSGDAEMIDPSGVDFELIPFRAGRRICVGYRMAIVVIEYILGTLVHSFDWKLRNGVELNM DEAFGLTLQKAVPLSSMVSPRLVSRCLCLINSMLELASIL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24281
1 167 167 5.5E-41 –
Gene3D
G3DSA:1.10.630.10
1 182 182 1.1E-66
IPR036396
SUPERFAMILY
SSF48264
1 181 181 3.8E-62
IPR036396
Pfam
PF00067
1 168 168 9.9E-50
IPR001128
PRINTS
PR00385
3 16 14 2.1E-6
IPR001128
PRINTS
PR00463
37 55 19 2.5E-21
IPR002401
PRINTS
PR00385
38 49 12 2.1E-6
IPR001128
PRINTS
PR00463
78 102 25 2.5E-21
IPR002401
PRINTS
PR00463
117 127 11 2.5E-21
IPR002401
PRINTS
PR00385
118 127 10 2.1E-6
IPR001128
PRINTS
PR00385
127 138 12 2.1E-6
IPR001128
PRINTS
PR00463
127 150 24 2.5E-21
IPR002401

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005506
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
Subterm of
GO:0016705
Molecular function Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
Subterm of
GO:0020037
Molecular function Heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0178400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…