Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0186400.1

Overview

Field Value
Gene ID LotjaGi6g1v0186400
Transcript ID LotjaGi6g1v0186400.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Stomatal closure-related actin-binding protein 1; TAIR: AT2G26770.1 plectin-like protein; Swiss-Prot: sp|O48791|SCAB1_ARATH Stomatal closure-related actin-binding protein 1; TrEMBL-Plants: tr|A0A1J7HKQ3|A0A1J7HKQ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0186400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:48036402..48043049) extracted from Lotus japonicus Gifu genome v1.2.

TTAAAGAGAAAAAGTGAGAGAGGGAACAGTTGTAGAAGAAGAAGCAACAGAAACTTGGGACCCGCCAAAGAGTTTTGAGT TTATGGCAACAACATAGTATTATAGTAGTATCCAAGTTCAGAACAGAACAACACAACTGAAAATGTTAACACTTAAAACA CAAACTTGCTGAGGGACCAGCATTCTCTTTCCCTTCTCTCTTTTTCCCTTTCAAAAAGCAAAGCTACTACCATCTTTCTT TGCCAACTCTCTCTCTCTCTCTCTGCTACCCTGTTGGTGGAATATCAAATTTGAACAACCCCTTTGCATCTGATCCAATA ATCCCAACCTCAAGCACCACCCTTCATGATCTGTAAGTTCAAGTTTTGTTTTTTCTCCTTTTTTTATATACTAGCTTTAT ATTGTAGCCTCAAATGCAGAAAAAGGAAAAAAAAATGTGAAAAGCAAGAGAGTTAGGGTTTAATTTCAATGTAAATAGCT GTCAAATTTTGCTATGATTTCAATGAGCTGCATTGATGGTATCTCATTTTATTAGCTTGTGAATTTGGTTTTGGGGAGGA GGGGTATACTTTTGGTTATTATTTTATTCTATTTTTGCATATCTGTGAGTGAATGCCCTTTTTTTACTTTTGGGGTATGT GTAAGTTTCACTGATTTACTTCAATTGAGCTACAATCTGCTCAGTTTTTAATGCTAAAGATTGCATTTTTGGTGATTGGC AGAGGTAGTAGCTCGGAAAAATGACGAGGATGACCCGTGATTTTGCTGATACTATGCAGAGAGAAGCAATGCCGGTGGTA TCAGCTGATGTGATATTTGCTTCTCTTCGATTTCCTAATTATAAAATTGGAGCTAACAATCAGATCATGGAGACAAAGGG TGATCCGAAAGTGCTAACTATGAAGGAGGTTGTTGCACGTGAGACTGCGCAGCTGTTGGAACAGCAGAAACGTCTGTCAG TTCGCGACCTTGCCAGTAAATTTGAGAAGGGTTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGTTGCCCTTTTTCTTTTT GAATTTCAACTCAGTTTTTTCTCATACCAATATAATAATACTTCACTGTGGAGGCTATTAAATTTTGTTCCGTAATTTGG TTTTTGATGTTTCTTATTTTAGCTAAGCTTGTTATGTGTTGGTGAAATTCAGGCTAGACTTAGAGAAGCTGCTTCACTGG AAAAACATGTTCTTTTGAAGAAGCTTCGAGATGCACTGGAGTGCTTGAAAGGGCGAGTGGGAGGAAAAAACAAGGATGAT GTAGCGGACGCTATTGCTATGGTTAGTTATCCTTTCAAAGGAAACATATGCACTTCATTTGTATTAATGACTTTCATATT TATCCTGCTGTGAATGAAGAGTTCACATGAAGCTGACATGAATATAAGATCTTGTTTATTATGCTGTGATCGGCAAGCAC CTTATATTCTCAAAAGATTTAGTCCCTGGGTGTGGGGGGTGGGGATGGTTAGGCTCACACATACTGGAAAGTTTAGCCTT TGGTATTATTATGCAGGAATCCATATATTTGCACCAGTTATTTGTGCTGATGCTATTTTTTTTGCAATAATAAACTGTAA CTTAGTGTACTCTTGCAGGTTGAAGCTCTAGCAGTTCAGTTAACTCATAGGGAAGGGGAACTAATACAAGAGAAATCCGA GGTGAAGAAGCTAACAAATTTTCTTAAGCAGGTGAAGTTAATGTCTTTGACCATTCCTTTTTCATGATAGAAGCAGAATT TTGATATGATATAGAGAAAAAGGTTTAAAAGAAGTACAATTTTGTACCATTTATAAACTCAGCAGGAAAAGAAAGAAGAA TATTACCAACAATGGCATCTGTATATATAAAAGAGGAGTTGTTAGGTAACCCCCTTAATTAGTTAGTTAGTTAGGGAGAT AATTAGAGAATTAGAGATGATAGGCTATAACATTAGTAAGAGGAGGAAAATTATAGAGGGTAATCTTTGGTTTTAGAAAG GAATTTAGAGAGGAAGAGAACAGGGTCTCTTACTACCTGGAATGCAATGGAGTTTATATCAGTAAACACTATTATCTGAA CCAGTGACTATCAGCACTCCAATCTCTCTCCATGTCTACTAAAGAAATTCTCTTAAAAAGCCATACAACGAACATCCCAT AAGGAATTTAAGCACCGAGATTTCCTTAAAAAAATCCTACCACTCTACTTCAGAAAAAGACAATGAGGATAGCAGATATT GCATGCCACCATACATTGTAAAGCATATTATCTCTTTAGTCTAAGAAAGACTTGAATATTGCTCGAAGTCGAACGATCTG AGAGTATTTGTGATCTCAATATTCAACACATAGCAAATGGGTGGCTGTTGCATATTTGCATATGACAATGCATGGGCTGA ACAAAATGCTGCATGCTGCTACAACTTTGTTTGTCTACTGACCTATTAGGGCTATCTCATTTGTCAGGAAATTAAATCTT GCATTATTTTATATGTGTATATTAATCGAAAAGTGAACTGTCTTTTCAACGGGCTATGATTTTGTGCATTTTGATATTGT TGTCCGTAATGGCTCATCTATATAACCTGTAGAACATAAAAGGTAGCTTTTACCGGGGAGGTACATGGTCATAGTTCTCC TTTTTTTGTCATATATAATTTTTAAATATTTCGTTTTTGGTTCTTTACAAAGGGTACGTAATGATATTACTTCCTTTTTG TGAAATAGACTCACTTTCAGTTCATATCTTCTATGCTTGGCTGTACAAAGAAATTTCCTTTACTGATACTGACAGTTCAG ATTCATTTGTAGGCTTCGGAAGATGCTAAGAAACTTGTAGATGAGGAAAGAGCTTTTGCTCGTTCTGAAATAGATAATGC CAGAGCTGCAGTTCAGAGAGTGGAGGAGGCGCTCCAGGAGCATGAGAGGATGTCTCGAGCTTCAGGAAAGCAGGTTCATC CTATTTCCTTGTCACTTATAATGTTTGACTTATAAAATTGGGGATTCAAATTTTTCGTCTACCAGAATAAGTACATTTCT TTGAAATTTAATCAAATTTATGAAATACAGAAGCATGGGTGAATAAATTTTTTTTCATGTTGACTGTTTGTACCAGAATT GATGTAGACCCATAGTGGATATTTCCAACTAGTTAGTGAATATTCAGTTGTTGTCTGTCGGAAATTCATCAGTTAGGAGT ATGCTTCTTTAGATCACTTGTTTCTTTTGGTTTGGAATGTTGTCACGCCAGATTTTGCGTAGTTGTCTCAAGTGAAATGT GCTGTTAAATACCTTGCCTATATCATTTGTCTTCCGTACATTATGCACCATTAAAAATATATTACTCTATTCAGGATTTT AATCTAATATTTCTTGGTATTTTTATTCTAGAAGGGACCTGAATGATGGGGAGAGTAACGAGATCCAACCCCTTCTGCTT TGGCTCGAAATACCCACATTTCTTCTAATCAAATAATTGTTCATCTGGAGTGTATTTTTTTAAGCCCTATTATCAATTCA AACATTATTTTAATATGGAAAAGTTTCTTGTTGACAACCCCATTTGGAAATATTAAGCTCCCTCTATTTTCTTGTTCTTT GACTGGATGCAGTACTTAATCAGTAGGTTCAAGACTCAATCAGTGGCTGCTTCATTTCACTTAAACACTTATGAGCAAGA TCTCTTGTATCTATTTAAAGGTTTAGGGATAATACAGGGCACTTGAATTTTATGGAAGTTGTTGGAAAGAATGAATTTAT GTTTAAGGGCCAACCTTTGACCCCATGTTTGTTCCTACATAGGTTTATGCTCATCGATTCTCTCTGGTGCTATGCTTATG ACTGAGATTCAAATGTGTCATTTCTGATGTGTGCAGAGACTGCTTATTCTTTTCCCCTTTTCTTTATCAATATTCCTCTA TTTGTACTTTACTCATTTTCTTTCTAATAATTTTTTTATAAGAAGATACTAAATAAGAATGACACTTCAATAATGTCAAT ATTCGCTGCTTGTATAGAAAGTCTAATTGGTGATGTTGCAGTGCAGTATCAACTGAGTAATTTTCATTTTGACAAAATTT AGTTCTGTGGGAACTTTAGGACCTGGAACAATTAATGAAGGAGGTTCAAGAGGCTCGTAGAATCAAAATGCTGCATCAGC CAAGCAAGGTATCTGTCATCCTTGATCAACTGTTAATATTTAAAAATTTCCTCTAGCGCGTAGCTGTACTTCCCTGATCC TCCCTCAATACTTATTTGTTCTTTGTTGATGTAGTTTTCTCCCATTGTTTTCTTAGGCTTACATCATATATTCAGGTTCT TGACAATTTTGTTGTTATTTTTAGGAAATTAACACATTGATTACTGCGTGCTTATAGGTTATGGACATGGAACATGAGCT ACAAGCATTGAGGACTCAACTTGCAGAAAAGACTAGACATTATCTTCGACTCCAAAAAGAGGTATGCCTATCATCTTATG CCTAAGCATTGAGGACTCAAGTGGCATGGTTATTGTTTGGGCTTCCATAATAAGTTATCACTGTTTTTCTTCCATTTTAC TTTTCAGTTATCAAGGGCAAAGAAAGGAGAGGAAAATGTTCCTAATTTATATGAATTAGAAGGGACAGAAACATTAGGCT CATATTTGCAAATTCAACCTTGCTCTGATAAAGCACCTGATCTTTCAAAATGTTCAATTCAGTGGTATCGTGTATCGCCT GAAGGTGCCAAAAAGGAACTTATTTCAGGTACATCTTCCAAAATTTGTTTACTTGGATTGTTGGAGGGTCTTATTTTATG TAGTGTACTGCTCAAAATGCTTTGTGCTGGATATTATTCGGTATTAAATGTCAATATGGTAGGATTGTCTTTTTATCCTT GCTTATTATATAATAAAACTTTCTTGTTCTCAGAAGCCACCAAATCAATTTATGCCCCAGAACCTTTTGACGTTGGACGC ATATTGCAAGTTGATATTATTTCAGAAGGCTTGCATATCACATTGTCAACCACTGGTCCAGTTGATCCAGGTTTGGCGCC AATGCTGAATCATGCAGTTTTGGTTCAAGTAGTCATTAACAGGAATAACTTCTATGTATTTGCCTCTGTTTAAACTAACA AGTAGTGTTATTATCACTTTAAAGAGATGGACATGTTTCTCTGTCCAATCAAGCTGAACTTAAAATTGATTTTATATTTG TTTTCAGCTGCTGGTTTGGGAAACTATGTAGAGGCACTTGTGCGAAAACATGACTCTGAATTCAATGTATGTCATTATGA TTGATCCTTTAAACTTTCATTTATTTGTCAAGCTGAGCAATGTTTTTACCAAGTTTGTTGGGTTCCATGCTTGTCCCTGA CTCCCTGCTCCATTCAGTCTTATAACAAATGGTTGTCACTCATAATCTATTAATGTGCTTTGCAGGTGGTTGTTACTCAG ACTAATGGATCACATAATCCAACTGAATCTATTCATGTTCTTCATGTTGGAAAGATGAGGATGAAGCTTTGTAAAGGAAC AGAAACAATAGCCAAAGAATACTATTCAAGTTCAATGCAGGTATTTCAAATTGTGCATGCTGTCAATTAAGGATAATCGT TGGCAGCAACTTGAAAATAAATCTTTCATGCTCCATCATTTTTTAGCTTGTGCATGTCCACTTTTTTATCGTGAAGTACA TGTTAACGTCAGTTTGCACTAGTGACCATGAATATACAAACATAACCTAAAATGTGGTGTTTTGCATTGTTTTCTTCAGC TTTGTGGAGTTCGAGGGGGTGGGAACGCTGCGGCGCAGGCACTATTTTGGCAACCGACGTCAGGGCTCTCTTTTGTATTA GCTTTTGAATCAGAGCGAGAAAGGAATGCGGCCATCATGCTTGCAAGGAGGTTTGCATATGACTGCAATGTATGTCTTTC TGAACTATATCTGTTATGTTAGAATTTGAGCATTCATCAGTTTCTTCCATGATTGCTTCCTTTTTCACTCATTTGCTATG GTGCCAATGCCTTTAAATGCAGATTGTTCTTGCTGGTCCAGATTATAGACCTTCTGAAACATGATGGGGCCTCCTTGAAT ATTATTTTCTCAACTGTAATTATTTGAGTTTTCCTTTCTTGTATTACAAGTGTGTAACATGCCTTTGTTTGTGCCAAGGC TCGTGGTCTTAATTCCTTTATACCAACACCAGGGCATTTTTTTGTTTGCCTTTGTGAGTGTGAGTGATGGTTGATGAAAA TTTATAAGTTTAATTATTCAAATTCGAGGAAGCCATTTCCAGAGTTTGAGGTGCTAATTGATTATATTTGATTGATCCAA TTATGGTCAGAGTTCTGTGTTTTATTGGACACTTTTCTTGCGGGCATGGATTTTTCTGAAACTTGTTCCTTATCCACTTA CTCGAAGCTTAATAACATTTTATGAAATGTAAATTTAATAAATTAAACCTCAACCATGTGGACATAATCATGTACCACCA AACATGTAAATCAACTTACACAAACTTATTTTAGTTTAAGTTTTAAATCTTTGTAAATGCAGCTGGGTCAAATGCTAAGT AGAGAAAACTTTGTAGTCCATAAAGGTCATACTATTACTATATTTTAACATCATTGTCTCAATAGAGAATAAATAGAGAA TACATGTG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0186400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACGAGGATGACCCGTGATTTTGCTGATACTATGCAGAGAGAAGCAATGCCGGTGGTATCAGCTGATGTGATATTTGC TTCTCTTCGATTTCCTAATTATAAAATTGGAGCTAACAATCAGATCATGGAGACAAAGGGTGATCCGAAAGTGCTAACTA TGAAGGAGGTTGTTGCACGTGAGACTGCGCAGCTGTTGGAACAGCAGAAACGTCTGTCAGTTCGCGACCTTGCCAGTAAA TTTGAGAAGGGTTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGCTAGACTTAGAGAAGCTGCTTCACTGGAAAAACATGT TCTTTTGAAGAAGCTTCGAGATGCACTGGAGTGCTTGAAAGGGCGAGTGGGAGGAAAAAACAAGGATGATGTAGCGGACG CTATTGCTATGGTTGAAGCTCTAGCAGTTCAGTTAACTCATAGGGAAGGGGAACTAATACAAGAGAAATCCGAGGTGAAG AAGCTAACAAATTTTCTTAAGCAGGCTTCGGAAGATGCTAAGAAACTTGTAGATGAGGAAAGAGCTTTTGCTCGTTCTGA AATAGATAATGCCAGAGCTGCAGTTCAGAGAGTGGAGGAGGCGCTCCAGGAGCATGAGAGGATGTCTCGAGCTTCAGGAA AGCAGGACCTGGAACAATTAATGAAGGAGGTTCAAGAGGCTCGTAGAATCAAAATGCTGCATCAGCCAAGCAAGGTTATG GACATGGAACATGAGCTACAAGCATTGAGGACTCAACTTGCAGAAAAGACTAGACATTATCTTCGACTCCAAAAAGAGTT ATCAAGGGCAAAGAAAGGAGAGGAAAATGTTCCTAATTTATATGAATTAGAAGGGACAGAAACATTAGGCTCATATTTGC AAATTCAACCTTGCTCTGATAAAGCACCTGATCTTTCAAAATGTTCAATTCAGTGGTATCGTGTATCGCCTGAAGGTGCC AAAAAGGAACTTATTTCAGAAGCCACCAAATCAATTTATGCCCCAGAACCTTTTGACGTTGGACGCATATTGCAAGTTGA TATTATTTCAGAAGGCTTGCATATCACATTGTCAACCACTGGTCCAGTTGATCCAGCTGCTGGTTTGGGAAACTATGTAG AGGCACTTGTGCGAAAACATGACTCTGAATTCAATGTGGTTGTTACTCAGACTAATGGATCACATAATCCAACTGAATCT ATTCATGTTCTTCATGTTGGAAAGATGAGGATGAAGCTTTGTAAAGGAACAGAAACAATAGCCAAAGAATACTATTCAAG TTCAATGCAGCTTTGTGGAGTTCGAGGGGGTGGGAACGCTGCGGCGCAGGCACTATTTTGGCAACCGACGTCAGGGCTCT CTTTTGTATTAGCTTTTGAATCAGAGCGAGAAAGGAATGCGGCCATCATGCTTGCAAGGAGGTTTGCATATGACTGCAAT ATTGTTCTTGCTGGTCCAGATTATAGACCTTCTGAAACATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0186400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTRMTRDFADTMQREAMPVVSADVIFASLRFPNYKIGANNQIMETKGDPKVLTMKEVVARETAQLLEQQKRLSVRDLASK FEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALECLKGRVGGKNKDDVADAIAMVEALAVQLTHREGELIQEKSEVK KLTNFLKQASEDAKKLVDEERAFARSEIDNARAAVQRVEEALQEHERMSRASGKQDLEQLMKEVQEARRIKMLHQPSKVM DMEHELQALRTQLAEKTRHYLRLQKELSRAKKGEENVPNLYELEGTETLGSYLQIQPCSDKAPDLSKCSIQWYRVSPEGA KKELISEATKSIYAPEPFDVGRILQVDIISEGLHITLSTTGPVDPAAGLGNYVEALVRKHDSEFNVVVTQTNGSHNPTES IHVLHVGKMRMKLCKGTETIAKEYYSSSMQLCGVRGGGNAAAQALFWQPTSGLSFVLAFESERERNAAIMLARRFAYDCN IVLAGPDYRPSET
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31172
1 491 491 0.0
IPR039640
PANTHER
PTHR31172:SF8
1 491 491 0.0 –
Pfam
PF16711
54 96 43 2.8E-24
IPR032012
Gene3D
G3DSA:1.20.5.440
100 151 52 2.1E-28 –
Pfam
PF16712
100 267 168 4.7E-79
IPR032009
Coils
Coil
159 179 21 - –
Coils
Coil
181 230 50 - –
Coils
Coil
239 266 28 - –
Gene3D
G3DSA:2.60.40.2700
268 365 98 1.3E-38 –
Pfam
PF16709
281 378 98 8.2E-47 –
Gene3D
G3DSA:2.30.29.140
366 493 128 2.3E-66 –
CDD
cd13232
366 484 119 2.45843E-68 –
Pfam
PF17684
381 487 107 4.1E-57
IPR041144

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003779
Molecular function Actin binding Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
Subterm of
GO:0007015
Biological process Actin filament organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking.
Subterm of
Part of
GO:0010119
Biological process Regulation of stomatal movement Any process that modulates the frequency, rate or extent of stomatal movement.
Subterm of
Regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0186400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…