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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0186400 |
| Transcript ID | LotjaGi6g1v0186400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Stomatal closure-related actin-binding protein 1; TAIR: AT2G26770.1 plectin-like protein; Swiss-Prot: sp|O48791|SCAB1_ARATH Stomatal closure-related actin-binding protein 1; TrEMBL-Plants: tr|A0A1J7HKQ3|A0A1J7HKQ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0186400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48037110..48042465) extracted from Lotus japonicus Gifu genome v1.2.
TTGGTGATTGGCAGAGGTAGTAGCTCGGAAAAATGACGAGGATGACCCGTGATTTTGCTGATACTATGCAGAGAGAAGCA ATGCCGGTGGTATCAGCTGATGTGATATTTGCTTCTCTTCGATTTCCTAATTATAAAATTGGAGCTAACAATCAGATCAT GGAGACAAAGGGTGATCCGAAAGTGCTAACTATGAAGGAGGTTGTTGCACGTGAGACTGCGCAGCTGTTGGAACAGCAGA AACGTCTGTCAGTTCGCGACCTTGCCAGTAAATTTGAGAAGGGTTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGTTGCC CTTTTTCTTTTTGAATTTCAACTCAGTTTTTTCTCATACCAATATAATAATACTTCACTGTGGAGGCTATTAAATTTTGT TCCGTAATTTGGTTTTTGATGTTTCTTATTTTAGCTAAGCTTGTTATGTGTTGGTGAAATTCAGGCTAGACTTAGAGAAG CTGCTTCACTGGAAAAACATGTTCTTTTGAAGAAGCTTCGAGATGCACTGGAGTGCTTGAAAGGGCGAGTGGGAGGAAAA AACAAGGATGATGTAGCGGACGCTATTGCTATGGTTAGTTATCCTTTCAAAGGAAACATATGCACTTCATTTGTATTAAT GACTTTCATATTTATCCTGCTGTGAATGAAGAGTTCACATGAAGCTGACATGAATATAAGATCTTGTTTATTATGCTGTG ATCGGCAAGCACCTTATATTCTCAAAAGATTTAGTCCCTGGGTGTGGGGGGTGGGGATGGTTAGGCTCACACATACTGGA AAGTTTAGCCTTTGGTATTATTATGCAGGAATCCATATATTTGCACCAGTTATTTGTGCTGATGCTATTTTTTTTGCAAT AATAAACTGTAACTTAGTGTACTCTTGCAGGTTGAAGCTCTAGCAGTTCAGTTAACTCATAGGGAAGGGGAACTAATACA AGAGAAATCCGAGGTGAAGAAGCTAACAAATTTTCTTAAGCAGGTGAAGTTAATGTCTTTGACCATTCCTTTTTCATGAT AGAAGCAGAATTTTGATATGATATAGAGAAAAAGGTTTAAAAGAAGTACAATTTTGTACCATTTATAAACTCAGCAGGAA AAGAAAGAAGAATATTACCAACAATGGCATCTGTATATATAAAAGAGGAGTTGTTAGGTAACCCCCTTAATTAGTTAGTT AGTTAGGGAGATAATTAGAGAATTAGAGATGATAGGCTATAACATTAGTAAGAGGAGGAAAATTATAGAGGGTAATCTTT GGTTTTAGAAAGGAATTTAGAGAGGAAGAGAACAGGGTCTCTTACTACCTGGAATGCAATGGAGTTTATATCAGTAAACA CTATTATCTGAACCAGTGACTATCAGCACTCCAATCTCTCTCCATGTCTACTAAAGAAATTCTCTTAAAAAGCCATACAA CGAACATCCCATAAGGAATTTAAGCACCGAGATTTCCTTAAAAAAATCCTACCACTCTACTTCAGAAAAAGACAATGAGG ATAGCAGATATTGCATGCCACCATACATTGTAAAGCATATTATCTCTTTAGTCTAAGAAAGACTTGAATATTGCTCGAAG TCGAACGATCTGAGAGTATTTGTGATCTCAATATTCAACACATAGCAAATGGGTGGCTGTTGCATATTTGCATATGACAA TGCATGGGCTGAACAAAATGCTGCATGCTGCTACAACTTTGTTTGTCTACTGACCTATTAGGGCTATCTCATTTGTCAGG AAATTAAATCTTGCATTATTTTATATGTGTATATTAATCGAAAAGTGAACTGTCTTTTCAACGGGCTATGATTTTGTGCA TTTTGATATTGTTGTCCGTAATGGCTCATCTATATAACCTGTAGAACATAAAAGGTAGCTTTTACCGGGGAGGTACATGG TCATAGTTCTCCTTTTTTTGTCATATATAATTTTTAAATATTTCGTTTTTGGTTCTTTACAAAGGGTACGTAATGATATT ACTTCCTTTTTGTGAAATAGACTCACTTTCAGTTCATATCTTCTATGCTTGGCTGTACAAAGAAATTTCCTTTACTGATA CTGACAGTTCAGATTCATTTGTAGGCTTCGGAAGATGCTAAGAAACTTGTAGATGAGGAAAGAGCTTTTGCTCGTTCTGA AATAGATAATGCCAGAGCTGCAGTTCAGAGAGTGGAGGAGGCGCTCCAGGAGCATGAGAGGATGTCTCGAGCTTCAGGAA AGCAGGTTCATCCTATTTCCTTGTCACTTATAATGTTTGACTTATAAAATTGGGGATTCAAATTTTTCGTCTACCAGAAT AAGTACATTTCTTTGAAATTTAATCAAATTTATGAAATACAGAAGCATGGGTGAATAAATTTTTTTTCATGTTGACTGTT TGTACCAGAATTGATGTAGACCCATAGTGGATATTTCCAACTAGTTAGTGAATATTCAGTTGTTGTCTGTCGGAAATTCA TCAGTTAGGAGTATGCTTCTTTAGATCACTTGTTTCTTTTGGTTTGGAATGTTGTCACGCCAGATTTTGCGTAGTTGTCT CAAGTGAAATGTGCTGTTAAATACCTTGCCTATATCATTTGTCTTCCGTACATTATGCACCATTAAAAATATATTACTCT ATTCAGGATTTTAATCTAATATTTCTTGGTATTTTTATTCTAGAAGGGACCTGAATGATGGGGAGAGTAACGAGATCCAA CCCCTTCTGCTTTGGCTCGAAATACCCACATTTCTTCTAATCAAATAATTGTTCATCTGGAGTGTATTTTTTTAAGCCCT ATTATCAATTCAAACATTATTTTAATATGGAAAAGTTTCTTGTTGACAACCCCATTTGGAAATATTAAGCTCCCTCTATT TTCTTGTTCTTTGACTGGATGCAGTACTTAATCAGTAGGTTCAAGACTCAATCAGTGGCTGCTTCATTTCACTTAAACAC TTATGAGCAAGATCTCTTGTATCTATTTAAAGGTTTAGGGATAATACAGGGCACTTGAATTTTATGGAAGTTGTTGGAAA GAATGAATTTATGTTTAAGGGCCAACCTTTGACCCCATGTTTGTTCCTACATAGGTTTATGCTCATCGATTCTCTCTGGT GCTATGCTTATGACTGAGATTCAAATGTGTCATTTCTGATGTGTGCAGAGACTGCTTATTCTTTTCCCCTTTTCTTTATC AATATTCCTCTATTTGTACTTTACTCATTTTCTTTCTAATAATTTTTTTATAAGAAGATACTAAATAAGAATGACACTTC AATAATGTCAATATTCGCTGCTTGTATAGAAAGTCTAATTGGTGATGTTGCAGTGCAGTATCAACTGAGTAATTTTCATT TTGACAAAATTTAGTTCTGTGGGAACTTTAGGACCTGGAACAATTAATGAAGGAGGTTCAAGAGGCTCGTAGAATCAAAA TGCTGCATCAGCCAAGCAAGGTATCTGTCATCCTTGATCAACTGTTAATATTTAAAAATTTCCTCTAGCGCGTAGCTGTA CTTCCCTGATCCTCCCTCAATACTTATTTGTTCTTTGTTGATGTAGTTTTCTCCCATTGTTTTCTTAGGCTTACATCATA TATTCAGGTTCTTGACAATTTTGTTGTTATTTTTAGGAAATTAACACATTGATTACTGCGTGCTTATAGGTTATGGACAT GGAACATGAGCTACAAGCATTGAGGACTCAACTTGCAGAAAAGACTAGACATTATCTTCGACTCCAAAAAGAGGTATGCC TATCATCTTATGCCTAAGCATTGAGGACTCAAGTGGCATGGTTATTGTTTGGGCTTCCATAATAAGTTATCACTGTTTTT CTTCCATTTTACTTTTCAGTTATCAAGGGCAAAGAAAGGAGAGGAAAATGTTCCTAATTTATATGAATTAGAAGGGACAG AAACATTAGGCTCATATTTGCAAATTCAACCTTGCTCTGATAAAGCACCTGATCTTTCAAAATGTTCAATTCAGTGGTAT CGTGTATCGCCTGAAGGTGCCAAAAAGGAACTTATTTCAGGTACATCTTCCAAAATTTGTTTACTTGGATTGTTGGAGGG TCTTATTTTATGTAGTGTACTGCTCAAAATGCTTTGTGCTGGATATTATTCGGTATTAAATGTCAATATGGTAGGATTGT CTTTTTATCCTTGCTTATTATATAATAAAACTTTCTTGTTCTCAGAAGCCACCAAATCAATTTATGCCCCAGAACCTTTT GACGTTGGACGCATATTGCAAGTTGATATTATTTCAGAAGGCTTGCATATCACATTGTCAACCACTGGTCCAGTTGATCC AGGTTTGGCGCCAATGCTGAATCATGCAGTTTTGGTTCAAGTAGTCATTAACAGGAATAACTTCTATGTATTTGCCTCTG TTTAAACTAACAAGTAGTGTTATTATCACTTTAAAGAGATGGACATGTTTCTCTGTCCAATCAAGCTGAACTTAAAATTG ATTTTATATTTGTTTTCAGCTGCTGGTTTGGGAAACTATGTAGAGGCACTTGTGCGAAAACATGACTCTGAATTCAATGT ATGTCATTATGATTGATCCTTTAAACTTTCATTTATTTGTCAAGCTGAGCAATGTTTTTACCAAGTTTGTTGGGTTCCAT GCTTGTCCCTGACTCCCTGCTCCATTCAGTCTTATAACAAATGGTTGTCACTCATAATCTATTAATGTGCTTTGCAGGTG GTTGTTACTCAGACTAATGGATCACATAATCCAACTGAATCTATTCATGTTCTTCATGTTGGAAAGATGAGGATGAAGCT TTGTAAAGGAACAGAAACAATAGCCAAAGAATACTATTCAAGTTCAATGCAGGTATTTCAAATTGTGCATGCTGTCAATT AAGGATAATCGTTGGCAGCAACTTGAAAATAAATCTTTCATGCTCCATCATTTTTTAGCTTGTGCATGTCCACTTTTTTA TCGTGAAGTACATGTTAACGTCAGTTTGCACTAGTGACCATGAATATACAAACATAACCTAAAATGTGGTGTTTTGCATT GTTTTCTTCAGCTTTGTGGAGTTCGAGGGGGTGGGAACGCTGCGGCGCAGGCACTATTTTGGCAACCGACGTCAGGGCTC TCTTTTGTATTAGCTTTTGAATCAGAGCGAGAAAGGAATGCGGCCATCATGCTTGCAAGGAGGTTTGCATATGACTGCAA TGTATGTCTTTCTGAACTATATCTGTTATGTTAGAATTTGAGCATTCATCAGTTTCTTCCATGATTGCTTCCTTTTTCAC TCATTTGCTATGGTGCCAATGCCTTTAAATGCAGATTGTTCTTGCTGGTCCAGATTATAGACCTTCTGAAACATGA
CDS sequence (LotjaGi6g1v0186400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGAGGATGACCCGTGATTTTGCTGATACTATGCAGAGAGAAGCAATGCCGGTGGTATCAGCTGATGTGATATTTGC TTCTCTTCGATTTCCTAATTATAAAATTGGAGCTAACAATCAGATCATGGAGACAAAGGGTGATCCGAAAGTGCTAACTA TGAAGGAGGTTGTTGCACGTGAGACTGCGCAGCTGTTGGAACAGCAGAAACGTCTGTCAGTTCGCGACCTTGCCAGTAAA TTTGAGAAGGGTTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGCTAGACTTAGAGAAGCTGCTTCACTGGAAAAACATGT TCTTTTGAAGAAGCTTCGAGATGCACTGGAGTGCTTGAAAGGGCGAGTGGGAGGAAAAAACAAGGATGATGTAGCGGACG CTATTGCTATGGTTGAAGCTCTAGCAGTTCAGTTAACTCATAGGGAAGGGGAACTAATACAAGAGAAATCCGAGGTGAAG AAGCTAACAAATTTTCTTAAGCAGGCTTCGGAAGATGCTAAGAAACTTGTAGATGAGGAAAGAGCTTTTGCTCGTTCTGA AATAGATAATGCCAGAGCTGCAGTTCAGAGAGTGGAGGAGGCGCTCCAGGAGCATGAGAGGATGTCTCGAGCTTCAGGAA AGCAGGACCTGGAACAATTAATGAAGGAGGTTCAAGAGGCTCGTAGAATCAAAATGCTGCATCAGCCAAGCAAGGTTATG GACATGGAACATGAGCTACAAGCATTGAGGACTCAACTTGCAGAAAAGACTAGACATTATCTTCGACTCCAAAAAGAGTT ATCAAGGGCAAAGAAAGGAGAGGAAAATGTTCCTAATTTATATGAATTAGAAGGGACAGAAACATTAGGCTCATATTTGC AAATTCAACCTTGCTCTGATAAAGCACCTGATCTTTCAAAATGTTCAATTCAGTGGTATCGTGTATCGCCTGAAGGTGCC AAAAAGGAACTTATTTCAGAAGCCACCAAATCAATTTATGCCCCAGAACCTTTTGACGTTGGACGCATATTGCAAGTTGA TATTATTTCAGAAGGCTTGCATATCACATTGTCAACCACTGGTCCAGTTGATCCAGCTGCTGGTTTGGGAAACTATGTAG AGGCACTTGTGCGAAAACATGACTCTGAATTCAATGTGGTTGTTACTCAGACTAATGGATCACATAATCCAACTGAATCT ATTCATGTTCTTCATGTTGGAAAGATGAGGATGAAGCTTTGTAAAGGAACAGAAACAATAGCCAAAGAATACTATTCAAG TTCAATGCAGCTTTGTGGAGTTCGAGGGGGTGGGAACGCTGCGGCGCAGGCACTATTTTGGCAACCGACGTCAGGGCTCT CTTTTGTATTAGCTTTTGAATCAGAGCGAGAAAGGAATGCGGCCATCATGCTTGCAAGGAGGTTTGCATATGACTGCAAT ATTGTTCTTGCTGGTCCAGATTATAGACCTTCTGAAACATGA
Protein sequence (LotjaGi6g1v0186400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRMTRDFADTMQREAMPVVSADVIFASLRFPNYKIGANNQIMETKGDPKVLTMKEVVARETAQLLEQQKRLSVRDLASK FEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALECLKGRVGGKNKDDVADAIAMVEALAVQLTHREGELIQEKSEVK KLTNFLKQASEDAKKLVDEERAFARSEIDNARAAVQRVEEALQEHERMSRASGKQDLEQLMKEVQEARRIKMLHQPSKVM DMEHELQALRTQLAEKTRHYLRLQKELSRAKKGEENVPNLYELEGTETLGSYLQIQPCSDKAPDLSKCSIQWYRVSPEGA KKELISEATKSIYAPEPFDVGRILQVDIISEGLHITLSTTGPVDPAAGLGNYVEALVRKHDSEFNVVVTQTNGSHNPTES IHVLHVGKMRMKLCKGTETIAKEYYSSSMQLCGVRGGGNAAAQALFWQPTSGLSFVLAFESERERNAAIMLARRFAYDCN IVLAGPDYRPSET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 491 | 491 | 0.0 | ||
| PANTHER | 1 | 491 | 491 | 0.0 | – | |
| Pfam | 54 | 96 | 43 | 2.8E-24 | ||
| Gene3D | 100 | 151 | 52 | 2.1E-28 | – | |
| Pfam | 100 | 267 | 168 | 4.7E-79 | ||
| Coils | 159 | 179 | 21 | - | – | |
| Coils | 181 | 230 | 50 | - | – | |
| Coils | 239 | 266 | 28 | - | – | |
| Gene3D | 268 | 365 | 98 | 1.3E-38 | – | |
| Pfam | 281 | 378 | 98 | 8.2E-47 | – | |
| Gene3D | 366 | 493 | 128 | 2.3E-66 | – | |
| CDD | 366 | 484 | 119 | 2.45843E-68 | – | |
| Pfam | 381 | 487 | 107 | 4.1E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. | ||
| Biological process | Actin filament organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. | ||
| Biological process | Regulation of stomatal movement | Any process that modulates the frequency, rate or extent of stomatal movement. |
Expression pattern of LotjaGi6g1v0186400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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