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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0186400 |
| Transcript ID | LotjaGi6g1v0186400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Stomatal closure-related actin-binding protein 1; TAIR: AT2G26770.1 plectin-like protein; Swiss-Prot: sp|O48791|SCAB1_ARATH Stomatal closure-related actin-binding protein 1; TrEMBL-Plants: tr|A0A1J7HKQ3|A0A1J7HKQ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0186400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48037142..48042465) extracted from Lotus japonicus Gifu genome v1.2.
ATGACGAGGATGACCCGTGATTTTGCTGATACTATGCAGAGAGAAGCAATGCCGGTGGTATCAGCTGATGTGATATTTGC TTCTCTTCGATTTCCTAATTATAAAATTGGAGCTAACAATCAGATCATGGAGACAAAGGGTGATCCGAAAGTGCTAACTA TGAAGGAGGTTGTTGCACGTGAGACTGCGCAGCTGTTGGAACAGCAGAAACGTCTGTCAGTTCGCGACCTTGCCAGTAAA TTTGAGAAGGGTTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGTTGCCCTTTTTCTTTTTGAATTTCAACTCAGTTTTTT CTCATACCAATATAATAATACTTCACTGTGGAGGCTATTAAATTTTGTTCCGTAATTTGGTTTTTGATGTTTCTTATTTT AGCTAAGCTTGTTATGTGTTGGTGAAATTCAGGCTAGACTTAGAGAAGCTGCTTCACTGGAAAAACATGTTCTTTTGAAG AAGCTTCGAGATGCACTGGAGTGCTTGAAAGGGCGAGTGGGAGGAAAAAACAAGGATGATGTAGCGGACGCTATTGCTAT GGTTAGTTATCCTTTCAAAGGAAACATATGCACTTCATTTGTATTAATGACTTTCATATTTATCCTGCTGTGAATGAAGA GTTCACATGAAGCTGACATGAATATAAGATCTTGTTTATTATGCTGTGATCGGCAAGCACCTTATATTCTCAAAAGATTT AGTCCCTGGGTGTGGGGGGTGGGGATGGTTAGGCTCACACATACTGGAAAGTTTAGCCTTTGGTATTATTATGCAGGAAT CCATATATTTGCACCAGTTATTTGTGCTGATGCTATTTTTTTTGCAATAATAAACTGTAACTTAGTGTACTCTTGCAGGT TGAAGCTCTAGCAGTTCAGTTAACTCATAGGGAAGGGGAACTAATACAAGAGAAATCCGAGGTGAAGAAGCTAACAAATT TTCTTAAGCAGGTGAAGTTAATGTCTTTGACCATTCCTTTTTCATGATAGAAGCAGAATTTTGATATGATATAGAGAAAA AGGTTTAAAAGAAGTACAATTTTGTACCATTTATAAACTCAGCAGGAAAAGAAAGAAGAATATTACCAACAATGGCATCT GTATATATAAAAGAGGAGTTGTTAGGTAACCCCCTTAATTAGTTAGTTAGTTAGGGAGATAATTAGAGAATTAGAGATGA TAGGCTATAACATTAGTAAGAGGAGGAAAATTATAGAGGGTAATCTTTGGTTTTAGAAAGGAATTTAGAGAGGAAGAGAA CAGGGTCTCTTACTACCTGGAATGCAATGGAGTTTATATCAGTAAACACTATTATCTGAACCAGTGACTATCAGCACTCC AATCTCTCTCCATGTCTACTAAAGAAATTCTCTTAAAAAGCCATACAACGAACATCCCATAAGGAATTTAAGCACCGAGA TTTCCTTAAAAAAATCCTACCACTCTACTTCAGAAAAAGACAATGAGGATAGCAGATATTGCATGCCACCATACATTGTA AAGCATATTATCTCTTTAGTCTAAGAAAGACTTGAATATTGCTCGAAGTCGAACGATCTGAGAGTATTTGTGATCTCAAT ATTCAACACATAGCAAATGGGTGGCTGTTGCATATTTGCATATGACAATGCATGGGCTGAACAAAATGCTGCATGCTGCT ACAACTTTGTTTGTCTACTGACCTATTAGGGCTATCTCATTTGTCAGGAAATTAAATCTTGCATTATTTTATATGTGTAT ATTAATCGAAAAGTGAACTGTCTTTTCAACGGGCTATGATTTTGTGCATTTTGATATTGTTGTCCGTAATGGCTCATCTA TATAACCTGTAGAACATAAAAGGTAGCTTTTACCGGGGAGGTACATGGTCATAGTTCTCCTTTTTTTGTCATATATAATT TTTAAATATTTCGTTTTTGGTTCTTTACAAAGGGTACGTAATGATATTACTTCCTTTTTGTGAAATAGACTCACTTTCAG TTCATATCTTCTATGCTTGGCTGTACAAAGAAATTTCCTTTACTGATACTGACAGTTCAGATTCATTTGTAGGCTTCGGA AGATGCTAAGAAACTTGTAGATGAGGAAAGAGCTTTTGCTCGTTCTGAAATAGATAATGCCAGAGCTGCAGTTCAGAGAG TGGAGGAGGCGCTCCAGGAGCATGAGAGGATGTCTCGAGCTTCAGGAAAGCAGGTTCATCCTATTTCCTTGTCACTTATA ATGTTTGACTTATAAAATTGGGGATTCAAATTTTTCGTCTACCAGAATAAGTACATTTCTTTGAAATTTAATCAAATTTA TGAAATACAGAAGCATGGGTGAATAAATTTTTTTTCATGTTGACTGTTTGTACCAGAATTGATGTAGACCCATAGTGGAT ATTTCCAACTAGTTAGTGAATATTCAGTTGTTGTCTGTCGGAAATTCATCAGTTAGGAGTATGCTTCTTTAGATCACTTG TTTCTTTTGGTTTGGAATGTTGTCACGCCAGATTTTGCGTAGTTGTCTCAAGTGAAATGTGCTGTTAAATACCTTGCCTA TATCATTTGTCTTCCGTACATTATGCACCATTAAAAATATATTACTCTATTCAGGATTTTAATCTAATATTTCTTGGTAT TTTTATTCTAGAAGGGACCTGAATGATGGGGAGAGTAACGAGATCCAACCCCTTCTGCTTTGGCTCGAAATACCCACATT TCTTCTAATCAAATAATTGTTCATCTGGAGTGTATTTTTTTAAGCCCTATTATCAATTCAAACATTATTTTAATATGGAA AAGTTTCTTGTTGACAACCCCATTTGGAAATATTAAGCTCCCTCTATTTTCTTGTTCTTTGACTGGATGCAGTACTTAAT CAGTAGGTTCAAGACTCAATCAGTGGCTGCTTCATTTCACTTAAACACTTATGAGCAAGATCTCTTGTATCTATTTAAAG GTTTAGGGATAATACAGGGCACTTGAATTTTATGGAAGTTGTTGGAAAGAATGAATTTATGTTTAAGGGCCAACCTTTGA CCCCATGTTTGTTCCTACATAGGTTTATGCTCATCGATTCTCTCTGGTGCTATGCTTATGACTGAGATTCAAATGTGTCA TTTCTGATGTGTGCAGAGACTGCTTATTCTTTTCCCCTTTTCTTTATCAATATTCCTCTATTTGTACTTTACTCATTTTC TTTCTAATAATTTTTTTATAAGAAGATACTAAATAAGAATGACACTTCAATAATGTCAATATTCGCTGCTTGTATAGAAA GTCTAATTGGTGATGTTGCAGTGCAGTATCAACTGAGTAATTTTCATTTTGACAAAATTTAGTTCTGTGGGAACTTTAGG ACCTGGAACAATTAATGAAGGAGGTTCAAGAGGCTCGTAGAATCAAAATGCTGCATCAGCCAAGCAAGGTATCTGTCATC CTTGATCAACTGTTAATATTTAAAAATTTCCTCTAGCGCGTAGCTGTACTTCCCTGATCCTCCCTCAATACTTATTTGTT CTTTGTTGATGTAGTTTTCTCCCATTGTTTTCTTAGGCTTACATCATATATTCAGGTTCTTGACAATTTTGTTGTTATTT TTAGGAAATTAACACATTGATTACTGCGTGCTTATAGGTTATGGACATGGAACATGAGCTACAAGCATTGAGGACTCAAC TTGCAGAAAAGACTAGACATTATCTTCGACTCCAAAAAGAGGTATGCCTATCATCTTATGCCTAAGCATTGAGGACTCAA GTGGCATGGTTATTGTTTGGGCTTCCATAATAAGTTATCACTGTTTTTCTTCCATTTTACTTTTCAGTTATCAAGGGCAA AGAAAGGAGAGGAAAATGTTCCTAATTTATATGAATTAGAAGGGACAGAAACATTAGGCTCATATTTGCAAATTCAACCT TGCTCTGATAAAGCACCTGATCTTTCAAAATGTTCAATTCAGTGGTATCGTGTATCGCCTGAAGGTGCCAAAAAGGAACT TATTTCAGGTACATCTTCCAAAATTTGTTTACTTGGATTGTTGGAGGGTCTTATTTTATGTAGTGTACTGCTCAAAATGC TTTGTGCTGGATATTATTCGGTATTAAATGTCAATATGGTAGGATTGTCTTTTTATCCTTGCTTATTATATAATAAAACT TTCTTGTTCTCAGAAGCCACCAAATCAATTTATGCCCCAGAACCTTTTGACGTTGGACGCATATTGCAAGTTGATATTAT TTCAGAAGGCTTGCATATCACATTGTCAACCACTGGTCCAGTTGATCCAGGTTTGGCGCCAATGCTGAATCATGCAGTTT TGGTTCAAGTAGTCATTAACAGGAATAACTTCTATGTATTTGCCTCTGTTTAAACTAACAAGTAGTGTTATTATCACTTT AAAGAGATGGACATGTTTCTCTGTCCAATCAAGCTGAACTTAAAATTGATTTTATATTTGTTTTCAGCTGCTGGTTTGGG AAACTATGTAGAGGCACTTGTGCGAAAACATGACTCTGAATTCAATGTATGTCATTATGATTGATCCTTTAAACTTTCAT TTATTTGTCAAGCTGAGCAATGTTTTTACCAAGTTTGTTGGGTTCCATGCTTGTCCCTGACTCCCTGCTCCATTCAGTCT TATAACAAATGGTTGTCACTCATAATCTATTAATGTGCTTTGCAGGTGGTTGTTACTCAGACTAATGGATCACATAATCC AACTGAATCTATTCATGTTCTTCATGTTGGAAAGATGAGGATGAAGCTTTGTAAAGGAACAGAAACAATAGCCAAAGAAT ACTATTCAAGTTCAATGCAGGTATTTCAAATTGTGCATGCTGTCAATTAAGGATAATCGTTGGCAGCAACTTGAAAATAA ATCTTTCATGCTCCATCATTTTTTAGCTTGTGCATGTCCACTTTTTTATCGTGAAGTACATGTTAACGTCAGTTTGCACT AGTGACCATGAATATACAAACATAACCTAAAATGTGGTGTTTTGCATTGTTTTCTTCAGCTTTGTGGAGTTCGAGGGGGT GGGAACGCTGCGGCGCAGGCACTATTTTGGCAACCGACGTCAGGGCTCTCTTTTGTATTAGCTTTTGAATCAGAGCGAGA AAGGAATGCGGCCATCATGCTTGCAAGGAGGTTTGCATATGACTGCAATGTATGTCTTTCTGAACTATATCTGTTATGTT AGAATTTGAGCATTCATCAGTTTCTTCCATGATTGCTTCCTTTTTCACTCATTTGCTATGGTGCCAATGCCTTTAAATGC AGATTGTTCTTGCTGGTCCAGATTATAGACCTTCTGAAACATGA
CDS sequence (LotjaGi6g1v0186400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGAGGATGACCCGTGATTTTGCTGATACTATGCAGAGAGAAGCAATGCCGGTGGTATCAGCTGATGTGATATTTGC TTCTCTTCGATTTCCTAATTATAAAATTGGAGCTAACAATCAGATCATGGAGACAAAGGGTGATCCGAAAGTGCTAACTA TGAAGGAGGTTGTTGCACGTGAGACTGCGCAGCTGTTGGAACAGCAGAAACGTCTGTCAGTTCGCGACCTTGCCAGTAAA TTTGAGAAGGGTTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGTTGAAGCTCTAGCAGTTCAGTTAACTCATAGGGAAGG GGAACTAATACAAGAGAAATCCGAGGTGAAGAAGCTAACAAATTTTCTTAAGCAGGCTTCGGAAGATGCTAAGAAACTTG TAGATGAGGAAAGAGCTTTTGCTCGTTCTGAAATAGATAATGCCAGAGCTGCAGTTCAGAGAGTGGAGGAGGCGCTCCAG GAGCATGAGAGGATGTCTCGAGCTTCAGGAAAGCAGGACCTGGAACAATTAATGAAGGAGGTTCAAGAGGCTCGTAGAAT CAAAATGCTGCATCAGCCAAGCAAGGTTATGGACATGGAACATGAGCTACAAGCATTGAGGACTCAACTTGCAGAAAAGA CTAGACATTATCTTCGACTCCAAAAAGAGTTATCAAGGGCAAAGAAAGGAGAGGAAAATGTTCCTAATTTATATGAATTA GAAGGGACAGAAACATTAGGCTCATATTTGCAAATTCAACCTTGCTCTGATAAAGCACCTGATCTTTCAAAATGTTCAAT TCAGTGGTATCGTGTATCGCCTGAAGGTGCCAAAAAGGAACTTATTTCAGAAGCCACCAAATCAATTTATGCCCCAGAAC CTTTTGACGTTGGACGCATATTGCAAGTTGATATTATTTCAGAAGGCTTGCATATCACATTGTCAACCACTGGTCCAGTT GATCCAGCTGCTGGTTTGGGAAACTATGTAGAGGCACTTGTGCGAAAACATGACTCTGAATTCAATGTGGTTGTTACTCA GACTAATGGATCACATAATCCAACTGAATCTATTCATGTTCTTCATGTTGGAAAGATGAGGATGAAGCTTTGTAAAGGAA CAGAAACAATAGCCAAAGAATACTATTCAAGTTCAATGCAGCTTTGTGGAGTTCGAGGGGGTGGGAACGCTGCGGCGCAG GCACTATTTTGGCAACCGACGTCAGGGCTCTCTTTTGTATTAGCTTTTGAATCAGAGCGAGAAAGGAATGCGGCCATCAT GCTTGCAAGGAGGTTTGCATATGACTGCAATATTGTTCTTGCTGGTCCAGATTATAGACCTTCTGAAACATGA
Protein sequence (LotjaGi6g1v0186400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRMTRDFADTMQREAMPVVSADVIFASLRFPNYKIGANNQIMETKGDPKVLTMKEVVARETAQLLEQQKRLSVRDLASK FEKGLAAAAKLSEEVEALAVQLTHREGELIQEKSEVKKLTNFLKQASEDAKKLVDEERAFARSEIDNARAAVQRVEEALQ EHERMSRASGKQDLEQLMKEVQEARRIKMLHQPSKVMDMEHELQALRTQLAEKTRHYLRLQKELSRAKKGEENVPNLYEL EGTETLGSYLQIQPCSDKAPDLSKCSIQWYRVSPEGAKKELISEATKSIYAPEPFDVGRILQVDIISEGLHITLSTTGPV DPAAGLGNYVEALVRKHDSEFNVVVTQTNGSHNPTESIHVLHVGKMRMKLCKGTETIAKEYYSSSMQLCGVRGGGNAAAQ ALFWQPTSGLSFVLAFESERERNAAIMLARRFAYDCNIVLAGPDYRPSET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 95 | 95 | 1.5E-280 | – | |
| PANTHER | 1 | 95 | 95 | 1.5E-280 | ||
| Pfam | 54 | 95 | 42 | 7.7E-24 | ||
| PANTHER | 95 | 448 | 354 | 1.5E-280 | – | |
| PANTHER | 95 | 448 | 354 | 1.5E-280 | ||
| Pfam | 95 | 224 | 130 | 9.7E-60 | ||
| Coils | 116 | 136 | 21 | - | – | |
| Coils | 138 | 187 | 50 | - | – | |
| Coils | 196 | 223 | 28 | - | – | |
| Gene3D | 225 | 322 | 98 | 1.1E-38 | – | |
| Pfam | 238 | 335 | 98 | 7.1E-47 | – | |
| CDD | 323 | 441 | 119 | 1.90478E-69 | – | |
| Gene3D | 323 | 450 | 128 | 1.9E-66 | – | |
| Pfam | 338 | 444 | 107 | 3.5E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. | ||
| Biological process | Actin filament organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. | ||
| Biological process | Regulation of stomatal movement | Any process that modulates the frequency, rate or extent of stomatal movement. |
Expression pattern of LotjaGi6g1v0186400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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