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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0200000 |
| Transcript ID | LotjaGi6g1v0200000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT2G24100.1 ATP-dependent DNA helicase; Swiss-Prot: sp|Q18FK8|COFC_HALWD 2-phospho-L-lactate guanylyltransferase; TrEMBL-Plants: tr|I1JWD7|I1JWD7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0200000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49668224..49672155) extracted from Lotus japonicus Gifu genome v1.2.
ACATTATATCCACTTGTCTCACGTGTCTCCCAACTAGGCAACACCAAATTTACAAAACTAACCCTGAGTCAAATTCAAAG CCTCGTATAACTGTCTCTCGCAAAACAAGGGAAAAACACAACGATACCCTTCTCTCACTTTCTCTCTCATCAAACCAGGT CTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTTGTTTGTTGGTATTAGGGTTTCGGAATCTCCAATCACCATTCTCATTT CTTCAACCATGGTTCAGCTGATGAAGAAAGATTCATCGAATCCCCACACGGCGTCGTTCCGGAGCTCCATGCCGCCGGTG AAGCTGGACATCGTCGAAGACCCGCTTGAGGAAGAGCACGGCCCCCTCAACAAGCGCCACAAACCTTCCTCCTCCCCCTT GCAAGAGGTAAACCGATCGTCTTCCTTGATCGCGTATGAATTTTATCACAAGTGAGACATTCTGCGTTGGATCATTGTGA TTTCCGCAATTTTAGCTAGACTTGCTAATTTTGAATCGCAATTTATATGATTGTATAGTTTTGAGATTTCACCATTTTGT TGCATATTAATTGTGAATTTCTGATGGATTTGATTGGTACCGGTCTCAATTTCGATATTTATTTCCGTTTTCAGAACAAT TTTTTATCACAGAATACTCGGTAATGCCAGTTTTGTTGCACGATTGATCGTTTAATTCAGATTTTTGGGTTGGTTTTAAT TGTAAGGCATCGTTTGGAAACACAGCTTAATTAAGCGATTATGGTCATAAGCACTTATGACATAAGCGCTTATTCATAAG CTATTTTAAATTTTTTTATTGAAATAAATTGAAAACAAGCTATATATAAGCATAAGCTCTTTTTCATAAGCTATCCCGAG TAGCTTATGAAAATAAGCTCAAAACAGTTTATGTTAGGCCATAAGCTGTTTGCATAAGCTCTCCCAAACACTGACATAAG AGCTTATGCTATCAGATAAGCTCAAATAAGCTCTTCCAAACGGGGCCAAAATATGTTTTAATTAGTGATTAGATTTGTGT CGTTCTCGACAGGAAGTTGAAAATTATTGTGTTAAATTCTTCGTGGAGGAATTTTGTTTTCATGGGATGATGTGAGTTAA AAAAATGTTGGTTTTCTACTTTTCTTAACGTTTGTGGGTGGTCTTGCTGATCATTTTGCAGTGGAGTGCTTCGAATGATA ATTCAGATGGTTCTTCTTCCCAGATCGGCATACTTGATGAGCCTAGCCCGTTGGGTTTGCGCTTGAGGAAGAGTCCTTCG CTGTTGGACTTGATTCAGATGAAACTTTCTCAAGGGAGAAGTGATGAGAATTTAAGCTCTGGAGTGGAAAAGGAAAGTAG AGGTGCCGCCGCTGCATCCGGTGCCGCGGAAAAGCTTAAAGCATCCAACTTCCCGGGTTCACTTTTAAGGATTGGATTAT GGGAGGTACGTTTGAGATACTTCATGTCGCTAGTGTATTTAGGAAATGATTTTTTTTTTTTCAATGAATTTTGGATAGCT CAAAGTTCTCTTTATGTTGGCAGTATAAATCAAGATACGAGGGTGACTTGGTGGCAAAGTGTTACTTTGCTAAACATAAG CTTGTTTGGGAAGTTCTTGAAGGTGGTCTAAAAAGCAAAATAGAAATTCAGTGGGCAGATATCATGGCACTCAAGGCACA ATGTCCAGAGAATGGTCTTAGCACTTTGACTGTTGTGGTAATTTATCTTCCTATCCTATTTTAAGATGCAAAGACCTATG AATGGGTTAGTTTATCATTGAACAAATGGTGGATTTGTGTGTTGCAGCTTGGTAGACAACCTCTTTTCTTCAGGGAGACT AATCCTCAGCCTAGAAAGCATACACTATGGCAGGCAACAGCAGATTTTACTAATGGACAGTGTAGCAAACACAGGTATAT TCTCTCAATTGGTTTTCCTCTGATGATATGTGGACGGGCTGAGCTGTTATACTCATACTATATGCATAAGTAAATATTGA AAACTTCAATAGTTTTATTAATTTATGATAAGTTGGGCAGGAGAATTATGGTTTTTTCAGCATTTAATATCACCATTCTT AAGGATAAAAACTCACTACCATTAGGAAACCTGAGAAGGGGAATATAAGAGCATAAGCGTTTATTGAAATAATCAAGGAA GAGAGGTTAAGTGTCATTTGATATTGTATTTTGTTGACCAAGTATAGAGGACACTTAATGTGCATTTTAAAGCATTTACT GAGGGCTAAATCGAAAAGTCTTTCAGGGATGCTGGGAGCCTGGGAGGCTATTTGATTGTTTTATAATTCCCATTGAGGTT TTACTGTATGTTTAGGTCCTGTTTATGAGGCCATGATGTTTGAAATCACAATCTTTTGGTTTTGTAGGCTGCATTTCTTG CAATGCCCTCAAGGAGTGTTGGCCAAACATTTTGAAAAGCTTATCCAGTGTGACTTGCGTCTTAATTTCTTAAGCCGACA GCCAGAGATATTAATGCATTCGCCACATTTTGATACACAACCTTCTGCATTTGAGGATCCTGGCCATTCAAAAGATCGTG ATCTGCATCAAGTCAGTGGTAAAGGATCATCATCCACATCTGGTTTTGAGGACAGAGGATCACCGCAGACATCTTTGTCA TTTTCATCATTTAAGATTGAACACACTGATCCTCCCAGCATGACTTTGGATAGTCTCCCTCGAGATGCACCTTCCCCTAG TTCAGGTACTTCAAAGAACTTGGCCTTGTAATTAATTAAAATAGATTGGCTATTTCTGTAGTGTATTTGTTGATCCATGT TTTGGGATGTTATTAGATATAGCAAACTTTTTACATGTTCATCAGTCCTGTGTTTTCCATGGAGTTATTTTGGCTTAATT GTTTTTTCTGTCTGTCTTTTACATATATAAGTCATGGATTGTCCTTCAATTGATGGGAGCACAAGTTCAGAAATCGAGTC CAAGGGCCCGAAAAGTTGGGATCAGATAAAAGTTCCTGGACTCAAACCTTCTATGTCAATGAGTGATTTTATTGGCCATA TCGAACATTGCCTGTCCGAGCAAATGACCTTACCCTTATCTGCTGGAGGATCAGAGTACCAGGAGATCCTTGAGGACATT GCACAGCATCTGCTCAACGACAATCAAGTTGCAGCGACTTCTGATGAAAAATCTCTCATGTCAAGGGTCAATTCTCTCTG CTGTCTTTTACAGAAGGATCCTGTACCAGCGCAGAATTCACACCTTCCTGAAGATAGTACTGTCGATGGACCTGTTGCTG AAAAAGATGTCAAGCCTTCTGAGGAGGACTCAAAGGACACTTCTGGTGGCAAGCAAGGACTAGGCATGTCCAGGAAAGAC TCGTTTAGCGATTTGCTTCTCCATCTTCCTCGAATCACATCTCTTCCAAAGTTCTTGTTTAACATATCAGAAGAGGATGG TGACAGTCAAGCCAGATAGTTATTTCAAAATAGGCAAGTATGGAGCTTCCTAGCAGAGTCTAGCTGCATAGGGAATATGT TATGTCTTTGTAGACATGTGCAAAGTTGTTTTACTTTGGGGACCATTGGGATTTGGAGAAGTTGTTTTAATGAAGAATCC TGGTAGAGCCCGTGTAAAGATTACTGAGTAGGTGTTTTAGCTCTATTTGTTTTATCTCCTTGCCTTTGTGTAGGACTCGT GGACGGTTGTTGTCTGCTTGTATGTAATTCATGTGTTCCCGGATCAAATGTGCCTTTCCTGGGAATAGAAGAATAGATCA ATTTCAGATCATAAGTTGTAGATGATTCTATTTCATTGACTGGGGCAGTTTGAATGATTCATCAAATAACAAGTGGGGGG GTGCTCATAATCCAAAATCCAATTTATTTGACAAAATCAAATTGAAAACTGAATTTTAAAAAATATCAAAAATTAATTTT TTATTAGAGTGA
CDS sequence (LotjaGi6g1v0200000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCAGCTGATGAAGAAAGATTCATCGAATCCCCACACGGCGTCGTTCCGGAGCTCCATGCCGCCGGTGAAGCTGGA CATCGTCGAAGACCCGCTTGAGGAAGAGCACGGCCCCCTCAACAAGCGCCACAAACCTTCCTCCTCCCCCTTGCAAGAGT GGAGTGCTTCGAATGATAATTCAGATGGTTCTTCTTCCCAGATCGGCATACTTGATGAGCCTAGCCCGTTGGGTTTGCGC TTGAGGAAGAGTCCTTCGCTGTTGGACTTGATTCAGATGAAACTTTCTCAAGGGAGAAGTGATGAGAATTTAAGCTCTGG AGTGGAAAAGGAAAGTAGAGGTGCCGCCGCTGCATCCGGTGCCGCGGAAAAGCTTAAAGCATCCAACTTCCCGGGTTCAC TTTTAAGGATTGGATTATGGGAGTATAAATCAAGATACGAGGGTGACTTGGTGGCAAAGTGTTACTTTGCTAAACATAAG CTTGTTTGGGAAGTTCTTGAAGGTGGTCTAAAAAGCAAAATAGAAATTCAGTGGGCAGATATCATGGCACTCAAGGCACA ATGTCCAGAGAATGGTCTTAGCACTTTGACTGTTGTGCTTGGTAGACAACCTCTTTTCTTCAGGGAGACTAATCCTCAGC CTAGAAAGCATACACTATGGCAGGCAACAGCAGATTTTACTAATGGACAGTGTAGCAAACACAGGCTGCATTTCTTGCAA TGCCCTCAAGGAGTGTTGGCCAAACATTTTGAAAAGCTTATCCAGTGTGACTTGCGTCTTAATTTCTTAAGCCGACAGCC AGAGATATTAATGCATTCGCCACATTTTGATACACAACCTTCTGCATTTGAGGATCCTGGCCATTCAAAAGATCGTGATC TGCATCAAGTCAGTGGTAAAGGATCATCATCCACATCTGGTTTTGAGGACAGAGGATCACCGCAGACATCTTTGTCATTT TCATCATTTAAGATTGAACACACTGATCCTCCCAGCATGACTTTGGATAGTCTCCCTCGAGATGCACCTTCCCCTAGTTC AGTCATGGATTGTCCTTCAATTGATGGGAGCACAAGTTCAGAAATCGAGTCCAAGGGCCCGAAAAGTTGGGATCAGATAA AAGTTCCTGGACTCAAACCTTCTATGTCAATGAGTGATTTTATTGGCCATATCGAACATTGCCTGTCCGAGCAAATGACC TTACCCTTATCTGCTGGAGGATCAGAGTACCAGGAGATCCTTGAGGACATTGCACAGCATCTGCTCAACGACAATCAAGT TGCAGCGACTTCTGATGAAAAATCTCTCATGTCAAGGGTCAATTCTCTCTGCTGTCTTTTACAGAAGGATCCTGTACCAG CGCAGAATTCACACCTTCCTGAAGATAGTACTGTCGATGGACCTGTTGCTGAAAAAGATGTCAAGCCTTCTGAGGAGGAC TCAAAGGACACTTCTGGTGGCAAGCAAGGACTAGGCATGTCCAGGAAAGACTCGTTTAGCGATTTGCTTCTCCATCTTCC TCGAATCACATCTCTTCCAAAGTTCTTGTTTAACATATCAGAAGAGGATGGTGACAGTCAAGCCAGATAG
Protein sequence (LotjaGi6g1v0200000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQLMKKDSSNPHTASFRSSMPPVKLDIVEDPLEEEHGPLNKRHKPSSSPLQEWSASNDNSDGSSSQIGILDEPSPLGLR LRKSPSLLDLIQMKLSQGRSDENLSSGVEKESRGAAAASGAAEKLKASNFPGSLLRIGLWEYKSRYEGDLVAKCYFAKHK LVWEVLEGGLKSKIEIQWADIMALKAQCPENGLSTLTVVLGRQPLFFRETNPQPRKHTLWQATADFTNGQCSKHRLHFLQ CPQGVLAKHFEKLIQCDLRLNFLSRQPEILMHSPHFDTQPSAFEDPGHSKDRDLHQVSGKGSSSTSGFEDRGSPQTSLSF SSFKIEHTDPPSMTLDSLPRDAPSPSSVMDCPSIDGSTSSEIESKGPKSWDQIKVPGLKPSMSMSDFIGHIEHCLSEQMT LPLSAGGSEYQEILEDIAQHLLNDNQVAATSDEKSLMSRVNSLCCLLQKDPVPAQNSHLPEDSTVDGPVAEKDVKPSEED SKDTSGGKQGLGMSRKDSFSDLLLHLPRITSLPKFLFNISEEDGDSQAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 526 | 526 | 8.1E-249 | – | |
| MobiDBLite | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 73 | 73 | - | – | |
| PANTHER | 1 | 526 | 526 | 8.1E-249 | – | |
| MobiDBLite | 28 | 43 | 16 | - | – | |
| MobiDBLite | 45 | 71 | 27 | - | – | |
| MobiDBLite | 99 | 122 | 24 | - | – | |
| MobiDBLite | 273 | 370 | 98 | - | – | |
| MobiDBLite | 298 | 328 | 31 | - | – | |
| MobiDBLite | 350 | 366 | 17 | - | – | |
| MobiDBLite | 452 | 494 | 43 | - | – | |
| MobiDBLite | 465 | 485 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0200000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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