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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0202200 |
| Transcript ID | LotjaGi6g1v0202200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase G; TAIR: AT5G57910.1 ribosomal RNA small subunit methyltransferase G; Swiss-Prot: sp|G5ECB1|ZIG4_CAEEL Zwei Ig domain protein zig-4; TrEMBL-Plants: tr|A0A151SHX8|A0A151SHX8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0202200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49948666..49953065) extracted from Lotus japonicus Gifu genome v1.2.
TAGGAAGCAGGTAGGCTGGTATGACACACAAAGTCCTGAAAGTAGGGGCTGCTGGTGGTGTTTAACTTTTTCCCTTTTCC AATTCCATTCACAAAGATGGAGGCAAACATTAAATATAAAGATAGTGATTCTTCAATTGGGTAGTGGTGGTGTTGATGCC AAAATCCCAAATCCACCCTTCAAAGATGGGTGTGATTGAGAGGAATATCAGGAAACTGAAGCATCACATTTCCTCCTTTT CAGGATCATGCACACAACACAAAAATAATAATGGAGGAGGCATTTGGCAAAAAAATGGGATCTTTCTTCCTTACTTTATC CAAATTCATCATGAAAAAGACATATTGGCTGAAAAAATAGCATCTTCCTTAGCATCAAAGAAAACTGAGGACAAGGGCAT GATTGTAAAATGCACCAATTAACCCTGCATATGTTGCTAGCAATAATGTGAAACCAAACCAAATGAGAGAAAGAGAAAGA GTCATCTGTGTCGTTTATAGGCCTAAAGTTAAGGTGCCACCAAAGACAAGAGCTACTACAACAGCATCATGTAGCAGAGA CAAGAGAGAGAGAGAGAGAGGCATCATCAAATTTCATTGAATTAATTTTTCTCTCTCTCTCTACACACAGGCCAACAACA ACAACACCAAAATCCAATGAGAGAAGAAACATGGAAACTCCACACGAGTCCACACCACACCGCACTCGTCAATGGCCCAG GTGGACCAAATTTTATGTACAAGAAAATCAAATTTGCCAAAACAAAAAAGGAAAGAAGGAAAGAATGGGAAACAACACAA AAAGAAAAGGAGAAGTTAGATAGATAGAGATATAGGTGAGTGTGAGTGTGGTGGCTTCAAATGTCCTCCAACTATACCCA CCTTGCAATTCCCTGAATTACCCTTCTGCAAGACCCCAAAAAGTTTCCATCTTCATCACTGTCTCTCCCAATATTTTTCA CCAAGTTTTGTGGGTGGCCTTCTTTGTCTTGGTCAGAGTTTCACAGAGAAAACAGGAAAACCAGAACCTTCTCTCACCTC TTCTCTCTCTCTCTCTCTCTCTATTTCTTTCCCATCTACCCCTTCATCTTCATCTTTATTCATTCCTTCCTCTCTTTCTT CTTCTTCTGTCTCTCCCTCTCTCCCTTTTCCTCCTTTGCCTTATCATACACACCTTCTTCTCTATCTCCTTTGTGTCCTT AGTTGTTGTTGTTGGGATTTTGCTTGAGGGTTTCTCTGTGATCTGATGAAGAAGATGAAAGGGGTTGTTGTCTCTGTGGA CTCTCCTGTTTATGAGGATCAGAGGACTAGGTTGAGGCATCAGAGTCTGTTGCAGGATTATGAAGACCTTCTAGAGGTAC CCCACTTCCTGGTTTTTGATAAAGTTTAATTTTTTCTTACTGGGAATTCAATAGATCTGATGTTTCCTTTGATTTCCTTG AGGTTGTTGTTGGTTTGGTTTGGTTTTATGCTTTGTTGTTGGGGAAGACAATAGAGGGATCCTATGTTGTGTTCTGGAAT TTTGTTTGAATTAAACTAATGTTTATGTTTGGATCACATATGAGTTGTTGTTCATTCAATCATTCTTATGGGTGTTTGTT TCCTATCTCTATTACTGCTTTTTAATTGTTGAGTTTCTCAGTTTCAGTTATGGACTCCATAACCCCTTCCTTTGAAATTT GAATGCTGTAACAAACATAAACATAGCACTGTGCTTGTGTTCTAGTTTTCTTTCTCCCTTTTTCTTAGAGTCTGTGATTC ACATATTTGCAACCCTGTCTCTTGAAGCTGATTGGCTTTATTTTCTTATTTAGAGCTCCTTTGGATACCCTAGGAAGTAT GAAAACATAAAAACTTTGCTACTTCAACACAAGGTGTGTCCTATGTGTTATTTTCTCGTTTTCATACTTTCTGATGGGTA TCCAAACGAGCTCTTAATATCATCTTTGTGAGGGCTTTAGAACTTCTTAAATCCTGGTCTTATGAATTATGTAGATGATT AATTGTTAAGTCTCCATTTGTTGGACTCGCTTTGCTTAGAAGCTAAGCTTTCTTAAAGCATTTTGCTTGCTTGCTTGTTT GTTTTGTTGTTGCTAGTCTTGTTTTGGTTGTTTTAGAAGTTTTACCTATTCTCTTTCCTTTATGGCAAACTCTTTGTATC CATGACTTGGAAAATTTGTAATTATGTTTTAACATGTTCAGGACACAAACTCCATGAGGATGAAATTGCAGGCTGCCAAG CAGAAAAGGTTGACACTGTCAGCAGAAGTTAGGTAATGTATCATGTCTTTTATAGTTTGCTGTTTTTTGAATTCACAAGG TGCTTATCCTGATAATTATCGCGCTTGCAACTGCAGTTTCTTGAGGAAGCGTTACAAATACTTGCTTAAAAATCCATCTC CAAAGCTGCAACCAAAGCAAGACATTTCACAGCCGCGAAAGCTCAAAATCCAAGCTAACCTTATTCCAAAGGGCCAGAAG TACAATAGAAAGGAATCTATGCAGCCCCCAGTTGCTCCTCATTGGAATTCAAATGGAAGGATTTCCAATGGTGCTGAGAT CAACACATTGCAGAAAAAGGCTCCTATGTTTGATTTGAACCAGAATGCTAGGAGTCTCAGTAGAAAAGATCCTTCTTTTC TCAGTTCTGCTCCGCCACTCGACTTGAATCACAAAGATATGAGTCACAGTATGAAAGAACCAGCAAAGAAGAGCATAACA CCATTTTTTGACTTGAACCAGATTGCGGTAAATATTATACCAACTAAACTATGTTTACATGATGTGTTATTGCTTATCTT TCATTCAAGTAAGCTTATGGTTTCCATGTATTTTGGTGCTATCAAATGCAGAGAGAAGAGGAGGAATTACTGGTTACTGA GCCCGTTAGGATTGAAGAACCGAAGAGAATTACACAAAGAGATGCGAGTGAAGAGCAGCTCAATGACATCATGTTGTCAG TTTGTAGAAACGATGGGAGCGGATCAAGTAGGACATCAGTAAAGAGGAAGATCTCATGGCAAGATCAGGTGGCTTTGAGG GTTTGAAGAACTAGTACAGTAGGCGAATTTCCAGCTCTTTTGGAATGTGTAATGTGCCTTGATGATATGTAGCAGGTTTT TACATTGACTAAAACATTCTAGCTTTATTTTTCTCTTGTAAAGATAAAATAGAGAATTATATGTCAATATATATAGATGA AATGGGGAATATGTTACCAGAAATCATTAACACCAGTGAGTTATAATTTGTTTTTTGCATTGCAAATAGTAGATCAAGTT GTTTTGTGCTTATGAAGAAGTTATTTTTTCTCTCTTAGTCCGTATTTAAAGGTTTAGGACTGGGGATGTTGGTTTTTTTT ATCCATGAAGTACCAACTGACAGTCTTAAGAGTAACTTGTAATTTCGCAGTGTTTAGAAGAGCTTATTTGAGTTTATCTT ATAACGTATGTGTTATGCAAGTGTTTGGGGAAGCTCATGATCCACCTATAACTATTTTGAGTTTATTTGTGTAAGTTGCT GATATTAGCTCACAATAGACGTTTATACCTACCAATAAGCAATTTTGAGCTTATTTCAATGAGCTTATTAAACTAGTTTA TGAATAAGCCCTTATGTGATAATTGTTTCTTATCATAAACTATAATTGTTTTGAGTTTAATTGAATAAGTTGCTGATATT AGCTTATGAATAGATATTTATGCCTACCAATTAGCTATTTTGAGCTTATTTCAGAATTTTTTTCAAATTAACTTATAAAT AAGCGTTTGCGTGATCAGCTGATTCTGTGAGCACTTAATTAAGGTTCTTACTTAAACACATCCTTTATCTGCTCATTTCT TATTTAAATTAACTAAACTTCAATTATTTGTTTTGGCACTGTATTGTTTCCTGTTGCCTTTGTGGGGTTTACTTGTTGGT CATGTGGAGGAAATCTATGTTGAAAAGTCAGCTTCTTGACCAACTTTGTCATGCACATCGGCATAGGAATGGAGAAAATC AAGACATGAGCCTGGAATGCTAAGTGTAATTATGAGATTATTATTGGGGTGGAGTGTATATTTTGGATAATAATGAAGTT AAGTGTTATTCTCACAAACCTTGAGAGGGGTGAGTGTATTTTACTTTTTTTTTTTTTCATTCATTCCATCTCCATTAACT TTCCTTTCGTATTTATACTTTTTCTATCACATAACTTATCTCACGTTTATTTCTCCGAGATTCAATTCAGAATGCGCAAC CCATACAAGTCGGTCCGCAACGGGCCAACACATTTTTTCAAAATGAGGTTCAACCCCATACGAGTCAATCTAAGTTAGAT CGGTTAATTTCCGTGTCAAACCCAATTAGTGAAATTTAGACCAGCTTGAATTTCTTAGGCTAAACTATACTTTTGCTCCG
CDS sequence (LotjaGi6g1v0202200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGATGAAAGGGGTTGTTGTCTCTGTGGACTCTCCTGTTTATGAGGATCAGAGGACTAGGTTGAGGCATCAGAG TCTGTTGCAGGATTATGAAGACCTTCTAGAGGACACAAACTCCATGAGGATGAAATTGCAGGCTGCCAAGCAGAAAAGGT TGACACTGTCAGCAGAAGTTAGTTTCTTGAGGAAGCGTTACAAATACTTGCTTAAAAATCCATCTCCAAAGCTGCAACCA AAGCAAGACATTTCACAGCCGCGAAAGCTCAAAATCCAAGCTAACCTTATTCCAAAGGGCCAGAAGTACAATAGAAAGGA ATCTATGCAGCCCCCAGTTGCTCCTCATTGGAATTCAAATGGAAGGATTTCCAATGGTGCTGAGATCAACACATTGCAGA AAAAGGCTCCTATGTTTGATTTGAACCAGAATGCTAGGAGTCTCAGTAGAAAAGATCCTTCTTTTCTCAGTTCTGCTCCG CCACTCGACTTGAATCACAAAGATATGAGTCACAGTATGAAAGAACCAGCAAAGAAGAGCATAACACCATTTTTTGACTT GAACCAGATTGCGAGAGAAGAGGAGGAATTACTGGTTACTGAGCCCGTTAGGATTGAAGAACCGAAGAGAATTACACAAA GAGATGCGAGTGAAGAGCAGCTCAATGACATCATGTTGTCAGTTTGTAGAAACGATGGGAGCGGATCAAGTAGGACATCA GTAAAGAGGAAGATCTCATGGCAAGATCAGGTGGCTTTGAGGGTTTGA
Protein sequence (LotjaGi6g1v0202200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKMKGVVVSVDSPVYEDQRTRLRHQSLLQDYEDLLEDTNSMRMKLQAAKQKRLTLSAEVSFLRKRYKYLLKNPSPKLQP KQDISQPRKLKIQANLIPKGQKYNRKESMQPPVAPHWNSNGRISNGAEINTLQKKAPMFDLNQNARSLSRKDPSFLSSAP PLDLNHKDMSHSMKEPAKKSITPFFDLNQIAREEEELLVTEPVRIEEPKRITQRDASEEQLNDIMLSVCRNDGSGSSRTS VKRKISWQDQVALRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 255 | 255 | 5.4E-73 | – | |
| PANTHER | 1 | 255 | 255 | 5.4E-73 | – | |
| Coils | 29 | 66 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0202200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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