Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi6g1v0203500
Transcript ID	LotjaGi6g1v0203500.1
Related isoforms 1	LotjaGi6g1v0203500.2
Lotus japonicus genome version	Gifu v1.2
Description	Kinetochore-like protein; TAIR: AT5G35520.1 minichromosome instability 12 (mis12)-like protein; Swiss-Prot: sp\|Q2V0Z5\|MIS12_ARATH Protein MIS12 homolog; TrEMBL-Plants: tr\|I3S7A5\|I3S7A5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0203500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:50090093..50097073) extracted from Lotus japonicus Gifu genome v1.2.

ACGTCCAAAATTAAATTCACAAGTGGCAAACAACGAGTTAGAACCAACCACCGCAGCTTCTCACAAAAGCACGTTCATTT CGGTTTCTTTGAAAACATTTGAAAGGGGAAACCGGGGTCACAGAGTGAAAATTGGCGGGAAATGGAAGGAAGTGAGAGTG AAGCAGTTCTTGAATCGCTGAATCTGAATCCCCGACTCTACCTCAACGAAGTTCTCAACACCGTCGACGATGTCGTCCAA CAAGCCTTCAATTTCTTCTACCAGTAACCCCAACCTCCTTTTCTCCCTTTTCGTTTTCCCCTTCAAATCACGAAATTCCA CGATTTCTTACTCATGTTCGTTTTGCAGGGAAGCATCGACTCACCTGAACTCTGAAACCACCCAAAGATCCCAAAATCTG AAACAGGTTAGTCTAGTTTTGTTTTATTTGTACTCAATTCAATGATAATTAGGTTAATTGGTTATGTTTAGTTGAGAATT TGTGCTAATTGCTCAACATGGTTGATTTTGTTTGTGAAATAGGGTGTCGATCGCGTTCGCCAACGGGTTCAATCTGTGCT GGACACACAGCTTGATGTTTGGGAGAAATACTGTCTTCATCACTGTTTTGCTCTTCCCCAAGGTTTTACTATGCCTAACA CTGTATGTATGTTTTACTGCATTCGTTTCTTTGCTTAACTTGTCGTGTGCATTGGTAACAATTGAGAATTATTGCTTTGG TTTCCTAAACCAAAAATGGCAAACCTGGTGCTATAAAGCTCTCGCTATGCACGAGGTCTGAGGTGGGGCCGGATCCACTT TGTGGATCTAATGTAGGCAGTCTTAGCTTGCATTTTTGCAAGAGACTAATTCCACGCCTCGAACTTGCAAAGTCAAATAG CAGCAACCTTGCTGTTGCGCCGAGGCTTCCTAGCCTATATTTATATTTTTCACTTTTGGTATTTTAAATTAGCTAACCTT GGGAGAAAATGTACTTCCAGGATGAATCAAGTAAGAATGACGTTGATCCAGGCGCTCTTTTTGATCCGGATGTAGATGCT CAGTTAGATTCGTTGAGAAAGAAACTAGCAGAGGTAATAAGAATGGTTATTGTGAGATTGTTTCTTTTGCAAAATTGATA CTTACTTTTTTTGTTTTTCTTGGTTAATTTGTCTTTCAGGTGGGGAAGGAGTCTGAAATGCTGAATCAAGAAGTTCAGGC ATTGGAGAGGCAGACTACTTTGAATGCTCGGTATATCAATGAGGCGGTGAAATCATATGAGCAAAACTCTTCTCATGAGT TGTTTCAGGGTAACTGAAGAACTTCTCATCAATTTTTTGTTCATGTTTTGACCTTTAGCATGCAACATTCTCTTCCACTG GAAAGTAATTCTGATATTGTATGTATGATTTTTATTTTAATTAAGTGGGGGATGCTCCATTTTTATTCCTGAATCTGCAT GTATCAACATCTGCATAATGCTTTTTTTTGAAATTTGACGATCCAAAAGAACATTGAATTCCTAGGATTTGTGCAGTTTA TTTAGCATTAGATTTGATTGATTGATTTGGAAATTGTTTTCTAAGTAACTCTTCAGAAAGGGCATTTCTTTTGTCTTGGC TTTTTTTGTTTTCCCCAATTAGGTAGGCAGTCAAGTAAGTAACTAGTATCTCAACATTTTGCCAATAATGTACATTTTAG AAAATGTCAGGTTTTCACTGTCTTTAATACTTCACAGAATGTCTTCAATATTTACATGCAAGGGAGCACAACTTCATTTC ATTTATAATTTCTCAAAACCATATCAAGCATTTAGGGGCACCAGCACCACTAGAGTGGCCATGGACTTGAGGGATGAATC TTAAACCATGAATCTCAAGTGAAGTATTAACCAAATAATACCAACAACATATTCCTGGAGCCCTACATTGTTCTTTTACG AAAATAGACAGGAATGAAAGTGTATTTTGTAATTGACAATATTGTCAAAGTGATAGCTGATATTACTTTGTTGAATTTTT CAAGTGGACAGATCTTTAAATATACTATTCTTTTGTTTCCTCCAGAGATTATGACAACCGCCTCAGAACTTGGAATGAAG GTGAAAAATCTAAACCCTAGCCTGATTAAAGACACTGAACAAATGAAAGGAAAAAGTATTTGCAGCCCTGAAATGGACCA ATCTGCTATAAATCCGGTCAAAGGTAACAAAATAATCATTCAATTTCATGCATTAACCTTGCAGGCTTAAGTTTATATTA CTGAGTTGGTCATTCTGTTTGCAGGCCTCTCAAATGTAAACTTAGAAGATCTTCAAGAATTCGTAGCTATTATGAAGAGT ATGTGAACTTGTGTATATTTTCTTCAATCTAGTTGGACTTGACTTGATGGATGTTGTACCTGTTGCCCTTTACTTAATTC TTTCTCTGCTGATTAGTTTGAATTTGCATGATTCAAGTATCTATACTTTGAAAACGTTTGTGTTGGTTCCTAAATGAGTT AGATTATTGCATAACTTTCTGTGTCTGCTAAATGCATTATGTATATTTTGTTGTTTTAGCTTTTTATTCTTTGGAACTCG TGATGAGCATAAACTTAAATCTCAAGAACTGCCAATATCATGGATTGCAAGACCTACTATTCCATCAAGAGATGATGGAT AGATGGTGACGAAAGTGGAGAAAAAACAGAACCTTCAAAATTAAAGAAAATCCAAGTTTTGAACCAAAGGATTCAGAAAC AAAATTATAAAAAAGCCATCACAATGACGCATGCATACCAAAAGCTCTAGTTGAATCTTGGTAAGATCCAAAGATAAATC ATATCTTGTTAATTATCAGAATATTAAATTTATTTATTCAATATATTATATTTATTGATTAATTCCGTTTACTCATTACT TTACAAAAAATAATATGACTAGATTTGTTAGTCAAAGTTTGAATGCTTAGATTTGATTTGGAAAGTTTGAAAACAATCAA TATAAAAGTAAGTAAAATATTAAAAATCAATACTCCTACTTTAAAATCAGTACAATCGCCTTCAGCCTCTGAACCTAGAT GAAGTGTTTTTTGCTTCTTGTCATTTTTCCTATTAGGGTTCTTCATGCATTTTTTACCATGTTTCAATAAATTCAATAAG CAATTACTCGTATGAGAGAGAGAGGCTCTGACGGGTTGCCTTCACGGTGGTGGCCCCAATCACGGCAGTGGCCCCAATCA CGGCGGTGGCCGGCGCAAGGTCATGTCTGGCGGGCGAATCGGTGGTTGCGAACGGAGATTCAGTCCAATGGCTACGAACC AAACAATCGAGTGAGGCACCAGAGCTCCTGGAACACGCAACGGCAAAACTGGTTGCCACGATGGAAGCAGGAGCACCAAA CATCACAGCGTGAGTGGCGGCCATGGCTTGGGAGCGATCGAGAGGATCAGCACTATCAGAGGAGTATACCAGCGGACTCA GTAAAAAAAAATAGCCAGCGCAAGACGGTATCTCGTGTTGGTCAGGACGTGAAGACACAGGGCCAGTCTTTCTCAGTCTA TGTAGATGGTTTGAGTGACAGGATTACCTTGATAAAATTGAAAACAATTTTCGGAAAGGCAGGGAGAGTGAAGGATGTCT TCATCCAATTCAAGAGAAAATTTCAGCGGCGTTTTCGGTACGGATTTGTTCGGTTTCAGAACGATGAAGAGGCTTGGCGG GCAATTCGAACTCTGAATGGCCTTCGAATAGATGGCAACTATTTGGTGGTTAAAAGGGCAAACCCAAAACAAGCCACCAC TAACTCCGTGCCCAGGAAAATATGGCGGCCTAAGAAAGAGCAGAAACAAGCAATTCCGATCATAAAAAAGGAGACACTCA AGGAAGAAGTCAGTATTCGTGAGGCTCCACGACAACCAGATGTTGGGCAATTGAGATTTTTGCCTTCTGATATGGATACT ATCTGGTACCAACGCTGTGCACGAGCTCGCACTCTTGAGGCGAAACCAGTCGATGTAATTCAGGACGAACTTGCTCGAAT TGGTATGTACAACTTTCGCTTAATACCATTAGGTGCAGATTCAGGACGAACTTGCTCGAATTGGTATGTACAACTTTCGC TTAATACCATTAGGTGCAGAGGAGCTTCTGTTAGAATTTGAGAGCAAGGAGGAGATGACAGAAACTCTCGAAGAGTGTAG TTTCTTCCTGGAACAGAAATTAACGGATTTACACCCCTGTACTTCGCTAACTTTTGGGGTTGCTCATCTGGTGTGGATTC GTCTGTGGCAAGTTCCGCTAGGTTTATGGTCGGATTCCTTTTTTACAGCTATTGGAAATAGGCTGGGCAAATTTGTGGAA GTGGATGTCGCAACTAAACAGCGCCATCGGGCGGATTTTGCTCGCATTCTTGTTCGTATGCATCATCCGCTTCTTCACTG TTTTTCAATGTCAGTAGATATGGAGGGAACAACATGTGTGATTCTAGTAGAGAAAGATGTCTATGCTTATGATTATGGAA AGATGGAAACCATGCCGTCGACTCCGGTAAAGCTATACAACTCGGAGGATGCTACTGACTTCGGCGATTATTCGGAAAAT GATAATGACATATTCAGTCAGGAGGTACATGAACCAGTCTTGCGTTTGGATGAAAAGTTTGATGCTGTTGCTGATGTTGA TTCAGGAGAAGAGGATAAGGTTTTCAGGAATGATACAATGGAAGGGCTCCAAAATAGGGTGGACGTGGAAGGAATTTATC CAGGAACGAACTCAGTTTTGCATTCCGGTGATTGTGGTGATTGTGAAGCACAGCTACAGGACACGCACGCAGCGGCAGCG GCAGCCTTAGTCTGCCCGTCCTTGCACCAGGAGGGGGTGCAACAAAAAAATTCAAATTTTACTGCATTGAATGGAGCTTT CAACGCAGGGAAGGAAGTTTTGGAGCAGTAACAGGTTCTGAAAGAAACTGGCTATACGGTGGAGGAAATTGAGGAATGGA GGAGAAATACAAGAACAGAAGCAAATATGTTATTCAAAAAACAAATCTTTCCTTTTGTTTTCAAATCTCCTGATTTTATT TCAAATAAATTCTATTCTGTTACAGGTTTTTCATTCAATTCACAGGATATTCCTCAAAAATATAGTTGGCCTCTTTACTC AACTTTCTGGGACCCACTTCAAGTTCAACAATTGCAAAGGCCCTGTTTGCCTCAAGGAATTCACAATAAATTTGATTTAT TGAGGTTTGCAACTTATCTACCAGCACCGTTTGGTTCTGTTTTTAACGTGACAGAAGCTGCAAGTCAAGAACAATACGTT CGAACTTCTCCTCATCAAATAATACGGCAGAATTCCACTGGCAACGTTCCACTCCCTCAAAGATGCGACACACAACATCA ATCTTCTTCTCCTCTCCAGGAACCTCAGTCTTCGTTCAAAGAAGTAGAACTATCGCTGGCTGACTTAACTACACCAACGC CTCACAATTCCCCAAACACAAATTCCTCTAAGAAAAGCTCACAGAGGGGACGGCCTAAGGGTAGCAAAAATAAACCTATA GCGTTGCCGATTGATTTTTTAGAACCAGTTACAGGTGAGGATGGCGTCACAACACGCGCGCAGCGAGCTTGGTTGCTTGG TCAGGAGCTAGGATTAAAACCGCGCGGTTCAGAAGCACTAATGTTGAGAGGTTTGGAAGCCCAAATCCGTGAAAATCACC CACACCTCAATTGAGATGTCGGGACCTTGGTTCACATGGAATGTTCGTAGGCTAGGTGGAACAACAAAGAGGGAGATTGT GAAAAAAGCAATTCAACAGCTGAAGCCAGAATTTTCATGCTGGCGTTGATGCTGTTGTTTTTACTGCTGATTGGAATCGC TGTTTTTCTGTTGTCGCTGGTGCTGTCTTTGCTGTTGCTGATATGTGTTTGATGCTGGTGCTGGTGCTGGTGCTGTCATT GCTGGTTGCTGATGCTGTCATTGCTGGTGCTGATATACGCTGCTGCTGTCATTGCTTTGCTGTTATGTGATGTTGCTGTT ATGTGTTGTTGCTGTTGTTACTCGAAATGGAGGCTGTTTTTGCTGTTGTTGGTTGCTGTTTTGCCTTTTAGCTGTTGCTG ATTTGACAGATTTATGTTGTTGTTTGCTGTTTTGTACTTTGCTACATGGAATAGTGTGTTGTTCATGTTATAAAATTTGG GCTACTGAAATAGGAAAAGGACGGGTGCTGTGGTGTGTCAATGAGAATGCTGTTGTGCTTATGTCTTGGATGCCTTGCTA GCATTATTTTTACGGCTGCTGAATTATTACAGGGGGTGTTGCGGTTTAGATTGATGCCTAGAGGAGATGATTTTTACTGT TGCTGAGCATTTATTTGAGTACTGGTGCTGCTGTTCTAGAGGGCTGGCTCATACAAACTAAAATGTGTTGTTGCTGTTGG GTGCTTCTATGAGGATGCTGTTATGGAAATTGTTGTTGATTTTATGTTTGTGGCTTTGCTGATGTGCTTTTTATTGCTGC TGAATATCATTTAAGGTGCTGGTGCTGTTGGTTCACACAAAACAAATTGGTGTTGCTGCAAATTGCAATTATAAGTTGCG GGTGTGCAAAATGGTGGAGGATCTTATTCTTGTATTTGTTAGCAACAAGTGTTATAGGATATGTGCATACTACCTTGATG TTGGTCATTTGTATGTAATTTTGGGACCATGATAGCTGCTACTAGATTATAAATTTGTATTCAGATGCAGAATGGCTTTC CCAGGATTGTGTACTCTTTTTCCTTGCTAGGTTTTTTTCCCATTGGGTTTTGCCTAGCAAGGTTTTACTGAGACTCTTTT TTGGGAACTATCCATAGTCATTTTGTGGGTTGATGGTGGGTTTATTTTCCTTAGGGCAGAGTGAAGCTTGGTCGCCTTGT TTCAGGTTCAGCTCGTATTGTACACTGTTTCTTGTCTGCGGTTGCTTTTGGCTCAGACTCCTTATATTAATAATATTCAT TACTTTTTCTAAAAAAAAAAA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0203500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGAAGTGAGAGTGAAGCAGTTCTTGAATCGCTGAATCTGAATCCCCGACTCTACCTCAACGAAGTTCTCAACAC CGTCGACGATGTCGTCCAACAAGCCTTCAATTTCTTCTACCAGGAAGCATCGACTCACCTGAACTCTGAAACCACCCAAA GATCCCAAAATCTGAAACAGGGTGTCGATCGCGTTCGCCAACGGGTTCAATCTGTGCTGGACACACAGCTTGATGTTTGG GAGAAATACTGTCTTCATCACTGTTTTGCTCTTCCCCAAGGTTTTACTATGCCTAACACTGATGAATCAAGTAAGAATGA CGTTGATCCAGGCGCTCTTTTTGATCCGGATGTAGATGCTCAGTTAGATTCGTTGAGAAAGAAACTAGCAGAGGTGGGGA AGGAGTCTGAAATGCTGAATCAAGAAGTTCAGGCATTGGAGAGGCAGACTACTTTGAATGCTCGGTATATCAATGAGGCG GTGAAATCATATGAGCAAAACTCTTCTCATGAGTTGTTTCAGGAGATTATGACAACCGCCTCAGAACTTGGAATGAAGGT GAAAAATCTAAACCCTAGCCTGATTAAAGACACTGAACAAATGAAAGGAAAAAGTATTTGCAGCCCTGAAATGGACCAAT CTGCTATAAATCCGGTCAAAGGCCTCTCAAATGTAAACTTAGAAGATCTTCAAGAATTCGTAGCTATTATGAAGAGTATG TGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0203500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGSESEAVLESLNLNPRLYLNEVLNTVDDVVQQAFNFFYQEASTHLNSETTQRSQNLKQGVDRVRQRVQSVLDTQLDVW EKYCLHHCFALPQGFTMPNTDESSKNDVDPGALFDPDVDAQLDSLRKKLAEVGKESEMLNQEVQALERQTTLNARYINEA VKSYEQNSSHELFQEIMTTASELGMKVKNLNPSLIKDTEQMKGKSICSPEMDQSAINPVKGLSNVNLEDLQEFVAIMKSM

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR14527 View details on PTHR14527 Search for proteins/transripts with this domain View external data on PTHR14527	2	240	239	5.0E-48	IPR008685 Show description in modal box View details on IPR008685 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05859 View details on PF05859 Search for proteins/transripts with this domain View external data on PF05859	10	140	131	4.3E-20	IPR008685 Show description in modal box View details on IPR008685 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	122	149	28	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000278 View details of GO:0000278 AmiGO InterPro QuickGO	Biological process	Mitotic cell cycle	Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.	Subterm of View details of GO:0007049
GO:0000775 View details of GO:0000775 AmiGO InterPro QuickGO	Cellular component	Chromosome, centromeric region	The region of a chromosome that includes the centromeric DNA and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome.	Subterm of View details of GO:0098687
GO:0005634 View details of GO:0005634 AmiGO InterPro QuickGO	Cellular component	Nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.	Subterm of View details of GO:0043231

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0203500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi6g1v0203500.1